Array 1 429-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHL010000220.1 Clostridium perfringens strain 1805-89 NODE_221_length_469_cov_1.88108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 428 29 100.0 36 ............................. TAATACTAAATAAACAGTTGCTTTCTTCCATTCTTA 363 29 100.0 37 ............................. CCAAAAACAATATGACAAAGGGGAACAATACGAGTTA 297 29 100.0 36 ............................. GTAGCTAAACCTACTAGTAAATCAACTAAACCAAAT 232 29 100.0 36 ............................. TAAAAAAACTAAAAAAGTTCAATAGATAAAATCTTA 167 29 100.0 37 ............................. GAACAAAAAAAAGAGTTGGATAAAAGGGAATCCGATT 101 29 100.0 36 ............................. TAGTTTTGGTAAAGTTAATAAGATATTAAAGAAACA 36 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 100.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AAATAGATATAGAGGAATGCTTAAGAAACCAAAGAAAGTA # Right flank : TTTAAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1728-456 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHL010000100.1 Clostridium perfringens strain 1805-89 NODE_100_length_1743_cov_1.89294, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1727 29 100.0 38 ............................. TATATAGATTTTAAATAATTATGGGTTTATATTGTTTA 1660 29 100.0 36 ............................. ATATCTTGTTTTAAAAATTTAAGATTAAAAAGCAAA 1595 29 100.0 37 ............................. ATAGCTTTAGTTGGATATATATTAAAACTTTTTGGAG 1529 29 100.0 36 ............................. CAATGAAGAGGGAGCTTGATAACTACGTTAAAGTTC 1464 29 100.0 37 ............................. GAACACCACAGAGGTAATTCAAGTCCTCATATGAATA 1398 29 100.0 36 ............................. GAGGGATTAAAAAATGCATTAATACAACTTAAAGAA 1333 29 100.0 36 ............................. ATGATAGACCAAATTGGAGAAATAAAAGATTTTAGC 1268 29 100.0 36 ............................. TTATTGTGTAGAGCAAAACATCAAGGAATGCAGAGT 1203 29 100.0 37 ............................. GAAGAGGTTTGTAAAGAAGAGGTGGAATTAAAGGCTG 1137 29 100.0 37 ............................. CTAATGTAAACCTGGTTACTGCTGTCCCACTTGCAGC 1071 29 100.0 36 ............................. TATCTTACAAGTGAAGGACTAAAAATAAAAGTTTGG 1006 29 100.0 36 ............................. CTGAGTGAACCAAATTTTATGCAGCTAGCATTTATT 941 29 100.0 37 ............................. GATACTAAATTACCTACTCCACTTGCAACAGGGCCAA 875 29 100.0 36 ............................. GAAGTTGATTATAAATTCCAACTTGGTATTTGCATG 810 29 100.0 35 ............................. TTTTTAGATGCATAGTTTAAAGTATCATATTCTAA 746 29 100.0 36 ............................. GAGATTGAAAGAATTAAGGAACAAGGGTATAAACTA 681 29 100.0 36 ............................. ATGCTCAAAGGACTTTAAATATTAGAGTGGTGGAAT 616 29 100.0 36 ............................. AGTAACCTTTCATCATCAGTCTTAGTCATATATTTA 551 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 485 29 86.2 0 .................GAA....C.... | T [458] ========== ====== ====== ====== ============================= ====================================== ================== 20 29 99.3 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AGTGATAAATTAGCA # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTCAAATCTTTCATCAGATATACCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 443-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHL010000222.1 Clostridium perfringens strain 1805-89 NODE_223_length_460_cov_1.48753, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 442 29 100.0 37 ............................. CCAAAAGTTTTCATGCAAAATCTAGATTGTATGATTA 376 29 100.0 37 ............................. GTCTAATCCTGCTGCAGTAGAAATAGAAAATATTTTT 310 29 100.0 36 ............................. TAATCAAGTTGGGCGACAGAGTAAAAAATAATACGG 245 29 100.0 36 ............................. GTTAGTTGAAAGTGCAAAAAATATAATGGATAATAT 180 29 100.0 36 ............................. AAATTAACATTTAATTTAAAACCTGTTCCGCTTTCA 115 29 100.0 37 ............................. TTTTATAAAAAAGAACTTCCTTACCTTACTAATAGAG 49 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 100.0 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : CCTGCATAGCCTTCTAA # Right flank : TGTATCCAATTTTATAGTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [25.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2634-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHL010000078.1 Clostridium perfringens strain 1805-89 NODE_78_length_2672_cov_1.74466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2633 29 100.0 36 ............................. GAAGTCCAAAAAATCCGAATATCCCATAAAGATGTA 2568 29 100.0 36 ............................. TAGCTCCAATTGTATCATCTTGAATACCAGTAATCG 2503 29 100.0 36 ............................. AAGGAAATAATAAAAATATAAAATTAAGCAGCTTTC 2438 29 100.0 36 ............................. TTTCCATTTATTAATTTCCATCTGCCTTCTTTATCA 2373 29 100.0 36 ............................. CATCATATAGGATTTGCTTTAGGTTTTGTAGTTACA 2308 29 100.0 36 ............................. ATCAACTCCTAATGGAGCTTTTGTCTTTGCTACAAA 2243 29 100.0 36 ............................. ATGCTTAGTTGAAATATAACCGTATTTACTAAGCTC 2178 29 100.0 36 ............................. GTTTGAATAAGTTTTAGGGTTAACTCCTAACTTTAC 2113 29 100.0 36 ............................. TTTGATAAAAAAGGTAGATGGAGAAGTATAGAAATT 2048 29 100.0 37 ............................. CCAATATTAAAGGGGCATATGCCCCTCTCTATTCTTC 1982 29 100.0 38 ............................. ATGTTCATTACAAAACTTAGTAAATTTTAAAGATGTTC 1915 29 100.0 35 ............................. AAAGAATATTAAAGCAATTAAAGAAGCTGTTAAAA 1851 29 100.0 37 ............................. GTACTAACAACTTCAAAAGTACTACCATCATCTCTAG 1785 29 100.0 37 ............................. GGAGGAGCTTTATTTAGAAACAATGGAAAAGATGCTA 1719 29 100.0 37 ............................. ATACATCAAGACTATGCGCAGGGTAAACTATGGGGAG 1653 29 100.0 36 ............................. GTAGTTGTAGAAATTAACCCTTGTAATAAATCTTTT 1588 29 100.0 37 ............................. AAATTTAAGCTTTGGATTATGACTAATAAAAAGCCTA 1522 29 100.0 36 ............................. CAATCTAAATCGGGTTGTTCAACAACTTTGTCTTTA 1457 29 100.0 36 ............................. GAGGGATGGATATATTATTTTGATGCTTATAGTATT 1392 29 100.0 36 ............................. CCTTTCTAAAAATTTTATTCTATTTGTTACTATAAG 1327 29 100.0 36 ............................. TGCAACAGCTCTTAAAGATGGCTGGAGAGCAAACAG 1262 29 100.0 36 ............................. TACAATGTTGCGAATTTCTCGTATAAGAAATATAAA 1197 29 100.0 37 ............................. AGATATAGAGGAATGCTTAAGAAACCAAAGAAAGTAT 1131 29 100.0 37 ............................. TTAATCTAGCATATAAACTAGCTGGCTTATATTGATT 1065 29 100.0 36 ............................. TAGTTATAGAAGGAATGAGCATTAACCAAATAGCAA 1000 29 100.0 37 ............................. TAAGAAGTGCAATTTCTTCTGCTTTAAGTGCTATAAG 934 29 100.0 35 ............................. TCGTATATAGACTAACATTGCATAATACAAATGGA 870 29 100.0 37 ............................. TTAAAAGTTGTACAAGTAGGAGGTCAAGATGGAAGAG 804 29 100.0 36 ............................. ATTGAAGCAAAAAGGCCATCTCTTAAAGTTCTACTC 739 29 100.0 34 ............................. AAGTTTCTACAGAAGAAGCTCCAAAGGAAGTACC 676 29 100.0 36 ............................. AATCTAATACCTCTTAAATCAGCATTAACTATGCCA 611 29 100.0 36 ............................. TGTCAGGACTATTCTTCGGCAGGTCGTCAATTTGGT 546 29 100.0 37 ............................. TAGTATATCCCTCTTCCTCTGCTTCTTTGCTTAAGTT 480 29 100.0 37 ............................. TTTTATGTCCTAGGAAGATGGGATTATAGATTACATG 414 29 100.0 36 ............................. AGCGCATCAACAAAGTGTTCATTCTCAGATACGAAA 349 29 100.0 36 ............................. TAGCTTTAGCTATTTCAACATAAAGATTAGCTAATT 284 29 100.0 37 ............................. GCAAGTAATGAAATAAACTATATGATAAATAGTAATC 218 29 100.0 37 ............................. GTAAATGCCGAAAATTTAAATGCTATGGTTGATGCTA 152 29 100.0 37 ............................. AGAGTATAAATAATAAGCTATTTAGATAAAAGATAGG 86 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 40 29 100.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : ATGGGAAAATGAAAGAAATAGGTAAGAATATTGTACAT # Right flank : TTTAGTATGAGCTGGTCTTGCTTCAATATTATAATGTTGTTTTATATTAACTATGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 52-606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHL010000177.1 Clostridium perfringens strain 1805-89 NODE_178_length_627_cov_1.66477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 52 29 100.0 36 ............................. CCAAAAAACTTAGATAGAGTTGGAGCAATTAAATAT 117 29 100.0 37 ............................. GGTTTAATAACTTCTTTTGGGGAAATTATACTTTCTA 183 29 100.0 38 ............................. TTTAAAATGACAGCTTATTGTGAAAATAGAGCAGGAGA 250 29 100.0 36 ............................. TACTAAAAACTGATGAAGATGATTCAAGATAAACAA 315 29 100.0 36 ............................. TTTAATACTATATCCACCTTTTTATCTTTTAACTCA 380 29 100.0 37 ............................. GTTGAATATGTTGGTATGATACCAGCTTTACCTTCTC 446 29 100.0 37 ............................. CTTGAAACTACTGAAACTACTAACTTAGAACAAGGTA 512 29 100.0 37 ............................. TTGAATTTACAGCACCTATTTTCTCTATTAAAGATCT 578 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 100.0 37 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : TGAGGAATGTAAATGTATCCAATTTTATAGTAGACGCCTTTATGCTAGTTAG # Right flank : TCTGCTCCATGGTCCTTTATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //