Array 1 26215-29684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEDH01000171.1 Streptococcus suis strain LS0X, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26215 36 100.0 30 .................................... CGAGGAGAACCCGTTGACGGGCGAGGATTT 26281 36 100.0 30 .................................... AAATCTCTTTGCTGACTACTCTGACGAAAC 26347 36 100.0 30 .................................... CTTTGCTACATTTCGAAAACTACTTCGTAT 26413 36 100.0 30 .................................... ACAGGTAATTGTTGGATTGCACCGTTTACG 26479 36 100.0 30 .................................... CAAAGTCATTTACGCAAAGCCGAAAAGTCT 26545 36 100.0 30 .................................... CAAGGTCTGCTAGTGCCTCTTTGCCACTGA 26611 36 100.0 30 .................................... TAAAGACCGTGACCAATTGGAGCAAGGGGA 26677 36 100.0 30 .................................... CGAGTCTGTATTAGAGCTCTTCGCCGCTTT 26743 36 100.0 30 .................................... TTGCTTTAGAATATCCGCTCTTGTGTTCTT 26809 36 100.0 30 .................................... CAACACCTTGGGTAATCAAGTATGAAGCAT 26875 36 100.0 30 .................................... ATGCGTTTTGCTGAAGCAGTTGGATTGACT 26941 36 100.0 30 .................................... CAAGGACAATTCTAGGTATTTCTGCCCTTT 27007 36 100.0 30 .................................... AGGTCAAATCTCAACTATCACTAATGCAGA 27073 36 100.0 30 .................................... TCATCGCAGCAGTGCATCTACCAATCTATG 27139 36 100.0 30 .................................... TACTCCAATTAGGAATCTCTATGTTCTTGT 27205 36 100.0 30 .................................... TACTTACCAAGTTGTTCCAACCGTTCGAAA 27271 36 100.0 30 .................................... AGAAAAAACAGGTAGCCGTCATCTCGTCTT 27337 36 100.0 30 .................................... AAAAGGTTTTGCTTCAACGAATATCGTCCT 27403 36 100.0 30 .................................... CAAAGTGGTAATTTAATTTCAGATGTTTAT 27469 36 100.0 30 .................................... TCTGGACAAGGAATTTTACTGCTAGGATAT 27535 36 100.0 30 .................................... CTCAAAGTGTAGAACGGTAATAGCGTAGCT 27601 36 100.0 30 .................................... AAATATTTTCTTTTATATTCATTTAATTCA 27667 36 100.0 30 .................................... CTGCCGTTCCACCGAAAATATTTATATTAC 27733 36 100.0 30 .................................... TTCACCACTCTTTACTCTACTAATGGTAGA 27799 36 100.0 30 .................................... CTAGCGTTTACGGGTAGATAGGTTGTTGGT 27865 36 100.0 30 .................................... ACAAGGAGACGGAGAATATTGCGATCAGTT 27931 36 100.0 30 .................................... TAATGCCTCAGCAATTGCTTCTAGCAGTTC 27997 36 100.0 30 .................................... TTAGTAATCGAATCGCCTGCTCCGTCTTAT 28063 36 100.0 30 .................................... AAGCACTTTATTGGTGTGGGCATCGGTCAA 28129 36 100.0 30 .................................... TTCACTATTCAAAAGCTGGTATTCAATTTC 28195 36 100.0 31 .................................... TTATCTGCCACGGTTGTAATGCCTTTGCGCT 28262 36 100.0 30 .................................... AATTATTTTCCTTATGATGGTACTTATGAT 28328 36 100.0 30 .................................... AAGATATATGCCAATTAAAGTTAGAAAAAA 28394 36 100.0 30 .................................... TGAAATCTTCTAAAGTCATTGTATATTTAA 28460 36 100.0 30 .................................... TTACTATGGTAACGGTCAACCAGCAACCAA 28526 36 100.0 30 .................................... AAAATTTTATCTTGATAAAGCACACAAACA 28592 36 100.0 30 .................................... GGACTATGTTGCAAAGTCAAAAGCTTGGTA 28658 36 100.0 30 .................................... AGAGGCTTTACGATTTCATAAGCAACCAGA 28724 36 100.0 30 .................................... CGACAGATGCTGATATTAAGTATAGAGGTT 28790 36 100.0 30 .................................... AAATCGCCTTGACCTTCTTCTTGAACTGTT 28856 36 100.0 30 .................................... TGATTGGCAATCGAAATTTACCACAAAGTA 28922 36 100.0 30 .................................... ACTTTGCTTGTGAATAAGTTAATCTGCTCT 28988 36 100.0 30 .................................... GTGACAACCTAGATTTGGGCATGAAAATTG 29054 36 100.0 30 .................................... TTACTAGACTTAAACTTACCAGAGTTGTTA 29120 36 100.0 31 .................................... TTCTGACCGCAAAGGGTTTGAATACCGGATA 29187 36 100.0 30 .................................... CGAACCAAAGAAAGAACAAGGTTTGGGAGT 29253 36 100.0 30 .................................... GTATGAAGATATTTCTATTCCAGGTAGGGA 29319 36 100.0 30 .................................... TATCATCTCAACGCTGATATGAATGTCATA 29385 36 100.0 30 .................................... TTACTTTAATTGGTAATGGTTATGACGCAT 29451 36 100.0 30 .................................... GTGAGTCAATACTATCATGACCGCTATACG 29517 36 100.0 30 .................................... TAAATTAGCAGCGATTATCTTGCATCAGTT 29583 36 100.0 30 .................................... GGCTTTTTTGATTTTCCGTCTGGTTAAATT 29649 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 53 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CCGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTATTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACCGACGGCATGATTGTTGGACTGGGGACTGGCTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //