Array 1 2474134-2473740 		**** Predicted by CRISPRDetect 2.4 *** 
>NC_022041.1 Paracoccus aminophilus JCM 7686, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   2474133	    29	 100.0	    32	.............................	ATAAACCGCTCGGCCGTCACCATGACCGCACT	
   2474072	    29	  96.6	    32	..............G..............	CCCCTTATTTCAACAAATCTGCGCACTCGCTG	
   2474011	    28	  93.1	    32	................-..........T.	CGCACCGAACGGATCTTGAAAGACGCGGCCAG	
   2473951	    29	  96.6	    32	........G....................	GCGGTGATGCGCCGGGCGCTGAAAAAGGCGGC	
   2473890	    29	  96.6	    32	..........T..................	GACGGGCGGATCGTGCAGTGGGGTCCGGGCTA	
   2473829	    29	  96.6	    32	.G...........................	TGCTCGTCGTCGCGCAGGCTATCGAAGCTGAG	
   2473768	    29	  69.0	     0	..............TA......CCGCTTT	|                               	
==========	======	======	======	=============================	================================	==================
         7	    29	  92.6	    32	CTGTTCCCCGCACCCGCGGGGATGAACCG	                                	       

# Left flank :   TCAAAGACCGCGCCCGCACCGCCAAGATTGCGGATGCCGGTGACAGCGCCGCTGGCATCGCGGATGGCGCCTTCAAGGGCCAGATGGATGGCAATTTTGCCGGGGCCGAGGCCGTAATGCGCGCCGATCTCGGGGCTGGTCCAACTGAAGCGCGCGCCCTTGAGCGCCGAGACCTCGCCCGCCGCCCCGTCTGCGCGGCCGCCTTGCCGCATGACTGGTCGAGGTGCGTGCCGGCGTCTATGTCGGCGACTGTTCGGCCCGCACGCGCGAAATGATCTGGTCCCAGGTCACCGGCGGGATCGAGCAGGGCGATGCCGTCATGATCTGGAGCGCGCCGACCGACCAAGGCGATGCCTTCGAAACCACCGGCCGCAACCGCCGAATGCCGGTCGATTTCGACGGCCTGAAGCTGGTGTCGTTTTTCCCGCGCGATGACGGGAATAATCGGTAGGATTTGCGGTAGACGAAAAGCATTGGTAGAACAGGTGCTTGCAACAAGA
# Right flank :  CCGCCCCCTCTTTGCACTGACGCGGCCAAATCGTCGCGCTCTGCTTGAGTGACCGCTCTGCCTGTTCTGATCCGGACGCCAAGCCGCATCGCGGAAGTCAGCTCTCCGCCCGCTCGACCGATTATGTTGGAGATGCAGCCAACATCGGTGCTGCGCCTCCAAACGGCAGCTTCGTCCGCAAAGTCGCCAACACCTGTCAGGAACGCTCGCTCAGCCCAATTTCGGAACTCCCGCCTGAGGACCAGTGGCCCTCGTTCTCGGTCCCGTTTCCGCTATCCGAGGTTGGTGCTGACCGACGCTGACGCGGACCAAGGTTGGGCGGATCGCGTTTGACGTGGGTCCAAGGCGCTGGCCTCTTGCGCTGACGGGCGGCCTCTCACCGCGACATCCTCACCCGCGAACGCCCGGAGAACGCGCCCATCCTGCCCGCAAAGAAAAAGGGCCGCGCTAAGGCGGCCCTTTCTGGTCATGTCGTCACAGATCAGATGATGCCGAATGCG

# Questionable array : NO	 Score: 3.73
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGTTCCCCGCACCCGCGGGGATGAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [4,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [10-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [35.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.55   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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