Array 1 12760-15086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVK010000027.1 Methylomicrobium sp. RS1 NODE_27_length_26066_cov_112.621276, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 12760 36 100.0 33 .................................... CCATGCGGCGGAACTGACCGACGAACAGATTAG 12829 36 100.0 33 .................................... TCATGCCGCAGATCGCGCCGCTACCACCGCTTG 12898 36 100.0 34 .................................... GCAGGAAGTGCTGAAAGGTACTTCGGGCACATCC 12968 36 100.0 34 .................................... AAATCGTCTGGACGATAAGGAGCCCCCGTATTTA 13038 36 100.0 32 .................................... AGAAACCGTCGAGATACCTGACGAATTACTAT 13106 36 100.0 34 .................................... ATAAGCTTCTAGGCGTATATCACTATCGTCATCT 13176 36 100.0 33 .................................... CCTTAGGTTCTGTAGAACAACCCAGCAACGTCA 13245 36 100.0 33 .................................... CCTTGTCGCTGAAGGCTTTAGTCAAAAGTACTT 13314 36 100.0 34 .................................... ATAAGATGTTTAAATGGTCTAAAGAACATTATAA 13384 36 100.0 33 .................................... ATATGGAGTTACACCGTCATCGCAGAAACTATT 13453 36 100.0 34 .................................... GACTCAGGTAAGCCTTTCCAGGCTTTCATAATTA 13523 36 100.0 33 .................................... TTAAGACCATGTTCTGTAACTACCCCGCCTTTA 13592 36 100.0 34 .................................... AAAACTCAATCTAGAGTTAAAGAACTTAACATTC 13662 36 100.0 34 .................................... TGAATTCTCGGTGATAAGTGGTGATCACGGAAAT 13732 36 100.0 33 .................................... ACGAACAGGTTGTTGATGCGTGCCTGCATATCG 13801 36 100.0 34 .................................... GCCGAATAACCATGCCGGAAGACATTCTGTTTCT 13871 36 100.0 33 .................................... CGAAGGCCGTGGGCGCCATTGTCTCGCGCCTGG 13940 36 100.0 33 .................................... TCTTCAGACTGTTCCGAATTGTCGCTGATCTCC 14009 36 100.0 32 .................................... AGAACGCACTGTCGATACCAACCGGCTTGATC 14077 36 100.0 33 .................................... ACCCCGGTTCAGTCGGAGCAGTTGTCCGTGTTC 14146 36 100.0 34 .................................... CAATCCCTTCTGGGACATTGATTTTTTGTTTTAC 14216 36 100.0 33 .................................... GGCGTCGATCGGCCCGCATGCGCCGCCGAATCC 14285 36 100.0 35 .................................... AATTCTCCTCCGTCATTTGCGCGACAGGTCCATCC 14356 36 100.0 34 .................................... AAGAAATTTCTGGTCTTCTTGGCATAACGTTTGG 14426 36 100.0 33 .................................... CCAAGCGTTCCTTTTTTCTTTGTCTCTGAAACT 14495 36 100.0 33 .................................... TTAAAAACCCCAGAGGGGATAGATTCTTCTCGG 14564 36 100.0 33 .................................... CCTGAAGGGTTTTTAACATGTGAATACCTGTAA 14633 36 100.0 32 .................................... GGACACTGGGTGTATACGTGCTGATCATTTTC 14701 36 100.0 34 .................................... AGCGGTACGGTACGCAGTTGAGCCTCAGACCTGA 14771 36 100.0 34 .................................... CAATATAACGGTTTCCATTTGCGGGAGCTCCTGG 14841 36 100.0 34 .................................... TTTGCCGCTAATAATTGGTAAACCTGTGCAGTGC 14911 36 100.0 34 .................................... ATAATCGCGTCGATAAACGCGGCTCTTTCGATGT 14981 36 100.0 34 .................................... AGCGATGCAGGGACAAGCTCGCTTTTGGACCTAG 15051 36 86.1 0 ..............................C.TACA | ========== ====== ====== ====== ==================================== =================================== ================== 34 36 99.6 33 ATTGAATAACAGCCCTGTTTACGAAGGGATTAAGAC # Left flank : AACGATGCCGACGGCGCGCTGTATCTCAGCGGCGGCTGGCTGGAGGAATACGTCTGGCTAACCGCCAGCGAATTGAGTTGCGACGAGGTCTACGCCAATGTTTACTTCACCGAAACCGGCAATCCCAAAGACGACATCCGCAACGAAATAGACTGCCTGCTTCTGCACAATAATCGCCTGCTCATGATCGAGTGCAAAACCAGCGTATTCAACGTATTCGACGCCAAAAACGACGGAATAGTGTATAAATTGGACACGCTGGAGCGCCGCACCGGCGGCTTATTCGGTGACGCCTGTCTGGTTTCAGCCAGAAAGCTGGATGACCCTACCCGCAATCGGGCTCGGGAATATAAAATCAAAATTATTGAAGGAGGAGACATCAAAAACATTAAAACCCGAATCCAAGACTGGATGAACGGTAAATTTCAGGTATGAGTACAAAATTGTTTGGCAATCACTTGTGTAAGCGACTGATTTCCAAATCTTTTTGGATTCACGCT # Right flank : AGGGCAATATTTCATTGCCGGCCGGCTCTAAAATTTAAGCTCTCATCCTGAACTAAATATCTCAATATAAGCCTTCCAATAAGGCTTTTTTATCAAGTTATACGGTGAGGAGTGTTACTCCTTCATGACAAATTTGTTGTTTGTCGGGTCCCGCCCTAAATGTGTTGCAATGTTTTCCGTGATCATCGACGGAGAACGATATGCAAACCCTATTTCTCGAAAAAGCCGATCTAACGTTGCGCGGTGAACGCGCCTGCTTGTTGGTTTACGAGGCCGGTAAACCAGTCGGAAGCGTGCCGCTGAAATCGTTGGAACGCGTGGTGTTATCACCACAAATCACGTTGGCGGCGGGTGTGCTGGGGATGCTGAGCGAGCACGGCATCGCCTTGTTGGTCGTCAATCACCGCCATCCTGAACGCTCGGCCTATCTGAGCACGCCAATGCATGGCGACGTACATCGGCGCATGCGCCAATACGCTTTGTACCTGGATGATGTTTTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAATAACAGCCCTGTTTACGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 316442-320429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVK010000003.1 Methylomicrobium sp. RS1 NODE_3_length_340369_cov_113.685493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 316442 28 100.0 33 ............................ TTAGGGTAATCTTTGGCCTCGTTCGTGTTGTCT 316503 28 100.0 32 ............................ AAATTTCTCGACATGCCGGAAAGCATTCCGCT 316563 28 100.0 32 ............................ TTCCGCAGCGCGAAAGACCGTAAACAGGATCA 316623 28 100.0 32 ............................ TTATCAAGCATTTGCGTGGCTTTCTTGACAGC 316683 28 100.0 32 ............................ TTTACAGAAAACTTAACCCTGATGGATTTAGA 316743 28 100.0 33 ............................ GTGGAATATTTTACGCCAGCAGCACCAGTGCTT 316804 28 100.0 32 ............................ TGTTCTTCGCTCATTGGCATAACTTTATCGTC 316864 28 100.0 32 ............................ GGTAAATCGATCACATCCCAATTTTCGTGAGC 316924 28 100.0 32 ............................ GATCAGGCTTATCTTTCTTTGTCGCGTCCAGG 316984 28 100.0 32 ............................ AGAGATTCACGTCTCCGTCGTCAAAGGCGTAA 317044 28 100.0 31 ............................ GTCGCCGCATTGCAGCGACTCGATCTTGATT 317103 28 100.0 32 ............................ GGTATTGCTGCTCGGCTCTGGCCGCGCCGGAA 317163 28 100.0 32 ............................ TTCACTCTGTCTAAGAAAACCGATAACGTAGA 317223 28 100.0 32 ............................ GCAAATTCCTTGGCCTTGCAGTTTCTCGGCGT 317283 28 100.0 32 ............................ AATTACCTACGGGATATCAGGATGGAATGCGC 317343 28 100.0 32 ............................ TGTTCCTGTTCTTTTTGGTACAGGCCATGGTC 317403 28 100.0 32 ............................ CTCGACAATTACCGCCGCTCTTACCGCCATGT 317463 28 100.0 32 ............................ GATTGAGACTGCGCCGAAGAATAAACCTGTTC 317523 28 100.0 32 ............................ TTTTCAACGCCATTGATCTTGACTTTGTACGT 317583 28 100.0 32 ............................ TTTAAGGTCGAGTCGACTTGCGAGGCGTGGCG 317643 28 100.0 32 ............................ TTCATGATCGCAAGCTAGATATAGCTCATTTA 317703 28 100.0 32 ............................ TTACGACTGATAAAACTATTGTCAGCATTGGA 317763 28 100.0 32 ............................ TGCTACTCCTAATTTCATGTTTTCTCCCCGGT 317823 28 100.0 32 ............................ AGACTCTGAGCGACATCGCACGGCTGCTGAAT 317883 28 100.0 32 ............................ AGTCTGCTAAAAACGCGCGGGATTTGGGAATT 317943 28 100.0 32 ............................ ATTCATGAATCGGAAGCAGCGCACCGTTCGCG 318003 28 100.0 32 ............................ TGTGGCGTGGATGAAACAAAATGAGCAATTTG 318063 28 100.0 32 ............................ TGGACATTCCAGCCCTGATTGGTTGCTTCGAG 318123 28 100.0 32 ............................ TGAATGCCATCAAAAAATACGATGTCGCTATT 318183 28 100.0 32 ............................ TGATGCGGCCGGGGAAGTCAGAGGCGCCACGT 318243 28 100.0 32 ............................ TGTTTCTCGACCGACCAGAGCGGCGCCTTATG 318303 28 100.0 32 ............................ ATTCAGCGGTTTCATGCCGCCACCTCCAGCTC 318363 28 100.0 32 ............................ ACAAGAGAAGAACTGGACGCCATCGTATTCGA 318423 28 100.0 32 ............................ TTTATCGATGATGTCTCCGCATATGCCGCGGA 318483 28 100.0 32 ............................ TATGGGCGCTATGCGATCAGGACGCGCCGAAA 318543 28 100.0 32 ............................ TAAAACCTCGCCTAGCTTGTCCAGAGCGCCGG 318603 28 100.0 32 ............................ TTCAATCGAATACGGGAGCAGCTCGCTTCCAA 318663 28 100.0 32 ............................ AGTACATCGAAAACATACGCAGCTAAAATCAT 318723 28 100.0 32 ............................ AGTCGCTTGTAGGCGTCGTAGTCGGCTGCGGC 318783 28 100.0 32 ............................ AATAGTGCGCTGCGCTTTTGACACGTCTTCTG 318843 28 100.0 32 ............................ GACATCGAAGCGGCCCGCCAGCGCGCGATCGA 318903 28 100.0 32 ............................ AGCTTGCGCGGACCCGTGGGTGCCTCGCCGGC 318963 28 100.0 32 ............................ TTCTCAGCCTCACGCAGACGGCAGATGAGTTC 319023 28 100.0 32 ............................ AAGTGCCTGTGTTTCGCTCGCCGCCCATCGTC 319083 28 100.0 32 ............................ AACACTGACAATACCAACATTAACAATGCCTT 319143 28 100.0 32 ............................ ATCACGCCGCCTAATTGCGACTCCCGCCAATC 319203 28 100.0 32 ............................ ATCAGGAATCTATCACCGCCGATTCTCAGTGC 319263 28 100.0 32 ............................ TGGTAGGTTTTGGCCTCCTGCTGCTTCGAGGT 319323 28 100.0 32 ............................ TGAAACTCACCGACCTGCGTAGCCGTCAACGG 319383 28 100.0 32 ............................ GCAGTTTTACGACGAATGGTTCCCCAAGTACC 319443 28 100.0 32 ............................ AGTTTGTGCTCAAGCGTTCGAAGTCCCGGCCT 319503 28 100.0 32 ............................ GGGTACGTGAACATGACTGCGTGAAGTGCGGT 319563 28 100.0 32 ............................ GTTGCCAGGAGAAGCAACGGCCGCGCCAATGG 319623 28 100.0 32 ............................ TTGTTCAAGGCTATACGGGGGCTATGGGCATG 319683 28 100.0 32 ............................ TTGATTCTTGACTACCGTGACTTTATAGCCAG 319743 28 100.0 32 ............................ TTATCTTACGTTTCATTATGAATGAATAATAA 319803 28 100.0 32 ............................ TGAAGAAGCCGCAGCCGCGCACCGAATACGAC 319863 28 100.0 32 ............................ ATCAAGCGCCTGATGGTCGTCCGGAGCGACAA 319923 28 100.0 32 ............................ GTATCAGATTGGCGTGTTGCTGTCCTCGTCAA 319983 28 100.0 32 ............................ ATAAAGCTAAGAATGTAGTCGACATCGGACTC 320043 28 100.0 32 ............................ AGTATAGAAATCGTCCACGGCCGATGCGCCGG 320103 28 100.0 32 ............................ TGGATAAGACGCACATGCTATTACCCGATATC 320163 28 100.0 32 ............................ TTTTCCTTCTGGTGCTTCGCGGCCATTTGCTG 320223 28 100.0 31 ............................ ATAGAATAAACGTTATTAGGTCGTTTAAAAC 320282 28 100.0 32 ............................ ATAGAATAAACGTTATTAGGTCGATTTAAAAC 320342 28 100.0 32 ............................ ATGATAGACGTAGACATCGACGACCGCGAGAT 320402 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 67 28 99.9 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : CATTGCACGGGAATCCGTCCTGTGCCGGTAAAACTGTTGGGTCAGGCGGTTTACCGCCGCCGGCAACCCAAAACGAACCCCGAGCGCTTGGCGCGGCGTTATGCCAAGCGTCATGACCTGGATTTTGAAACCGCCCTGAACACAACCGTTCAGGTGCGGCCGGAAGGCGGGGATGCCTGCTACCCAACGGCGTTTCGTTATTGCGAAATGCCGCGGCAATCCGTGGCTTTGCCGTTCATCCGCTTGAAGAGCTTGAGCACTGAGCAGCCTTTCTGTCTGTGGATCGAAAAAAGCTCGGTCGCGGAACCGGTTGCCGGTGGTTTTAGTTGTTATGGCCTCAGCGCCAGAAGCACCGTACCCGAATTTTGACCCAAATTTCTACGTTCTTTAAAAATATAATCAAAATCAGCTAGTTGTAGACTTTGGGTTTGCGGATGGTAAAAATGGAGTTAACCCTGCTCAGCCCTTGCTGCAGCTGGCTTGGAAGTTTTTTATAATCA # Right flank : GCTGTTTGGAAATTCCCGCTTCAAGCCAAGCGATTCAACATCAGACGCGTCATGGCGATATAAATCCAGGTTTCGTCCGTGCAAGTGAGACGCTCATAGTTTTTGCTGAGGCGGCGTGAGTGGTTCAACCAGCCGAAGGTGCGCTCAACCACCCAACGGCGAGGCAGCAGTACGAACTTCTTCGTTTGTTTGGGACGCAACACCACCGCCAGACAGAACTTGAAGCGTTCTGCCACCCAGCCCAGCAGCTGACCGCTATAGCCGCCATCAACCCAAACCTTGCGCAACTTTTTACAGCCACCGGGCAGCTGGCTTAACAGCCGGCGTGCTCCGTCCCGGTCTTGTACACTGGCGGCCGTCACGACGATGGCCATAAGCCAGCCCAAGGTATCCACCAGAAGATGGCGTTTGCGGCCATTAATCCCTTTCCCGGCATCGAAACCGCGCACTCCGGATACCGCGGTACACTTGACGCTCTGGCTGTCCAGACAACCGGCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 321343-321550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVK010000003.1 Methylomicrobium sp. RS1 NODE_3_length_340369_cov_113.685493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 321343 28 100.0 32 ............................ TAAGTTAATCAAGCGCGAAATCCATCGTTTGC 321403 28 100.0 32 ............................ TGATGAGCGGATTCAGGCGGCGCTGTGGTCGA 321463 28 100.0 32 ............................ GGTGGTGGTGCTGTCGCAGCTGAACCGGAATT 321523 28 85.7 0 ........................ATTG | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : CCATTAATCCCTTTCCCGGCATCGAAACCGCGCACTCCGGATACCGCGGTACACTTGACGCTCTGGCTGTCCAGACAACCGGCTGTGGGGTGTTTATGACGTCCCAATTGCTGCCGCAGTCTGGCGTGTAGCCGATGATGCAACCGTGCCCAGGTGCCGTCGGAGGACCAGCGTCTGAAATAATAATACACCGCCGTCCATGCCGGAAACTCGCGGGGCAACTGCCGCCATTGGCAACCGGTCTTCAGGCTGTACAAGATGGCATTGATGACTTGGCGCAGGCTCACTTCGCGTGGCCTGCCCACAGCCGATACCGGCAGATGGGGCTTCAGATAGCGCCATGGGCCATCGCTCAGGTTGCTTGGGTAGCGCTTCTTTCGCTTTTTTGAGGCATTATCGGGTCACTGAAAATAAAAATCCCTATAGAGTCAATTCGAAAATCAGAGTTTCCAAACAGCCTCTTAGAAAAATCAATTCGCAGGAGCGGACAATATCAGCAA # Right flank : GAGATCGCCTTTGGATTTCGTTTGCAGTCAGGCGTTTCAATCGTTGCGAACAAGAATCGCCGGTGTACGGTCGTGGATCGGCCGCACATGGCCTTGACTTTAAAAGAGAGATTCTACTCGCTGTTGCCGCCAGGCTTGTCTTCGTCGTCGGTTTGATTGTCCAGCGAGCCCATCTTGGTAAAAAATACCAAACTTAAGATAACCGCCAGCGCCATCACAATTTCAAAAACCATTCTCAACATTGTTGCCACCTTTGAGTCAGGAACATTTCGGATTCTGATCCGGAATGCAGGGGATTGCAAGATATCTTGGAGAGCAAGATAAACGCTGTCAGTCAAGTCAAGCCCTATGAGAGAGGGATCGAACGATTTTGCCGACTTCAGGACGCCGGGAGCGGCATGTATGTAAGAGGGAATGAAAATCAATGGATTATTGTCCTAAACCTTTCTCGGAGGGAGAGTGGAATTATTCAGAACTTCCTGAAGTAGCAGGGGAGTTGC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 95528-93914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVK010000015.1 Methylomicrobium sp. RS1 NODE_15_length_135446_cov_111.233989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 95527 28 100.0 33 ............................ CAGGATGAACTCAAAGAAAAAAACGCCTATTTA 95466 28 100.0 33 ............................ CGCATATTGCTGTTTACCCGTTACCCGCCGGCC 95405 28 100.0 33 ............................ TATGCCGGATAAGATCGAGGTGCAGATCCGGGA 95344 28 100.0 33 ............................ TTAGAATCATACGTCAAATCCATTTCACCCAAA 95283 28 100.0 33 ............................ TCTAAATTCTATCCAGTCCTCAGTGTGATCGAT 95222 28 100.0 33 ............................ TCTAAATTCTATCCAGTCCTCAGTGTGATCGAT 95161 28 100.0 33 ............................ CATAGTAGTTCGCCGGCGTGGCATTGCTGTACG 95100 28 100.0 33 ............................ TTCAATATACAGCGTTCTTGAGTTTGCCGACGT 95039 28 100.0 33 ............................ AGCACTGGTATAGGAGGCCCGCAGCGCGTCGTA 94978 28 100.0 33 ............................ TGGTACGTGGCGATATACAAGAAAAGCGTCTGG 94917 28 100.0 33 ............................ TCAAGCGGCAGTCGCTGACGGTAACCTGGCTGG 94856 28 100.0 33 ............................ TTATCCGTTGTGGCTGGCCCGCACCACGCTGCA 94795 28 100.0 33 ............................ TGCGGATAGCCGTCTTCACGCCGGTTCGTGCGG 94734 28 100.0 33 ............................ CGAAGGCCGTTGCAGTAGCCGGCAAGCGATCTG 94673 28 100.0 33 ............................ TCTTCCAGTGATATTCTGGAGGGCATCGCGCGG 94612 28 100.0 33 ............................ CGACATCTTGGGTATGCCGCCGACTTTCCCCTG 94551 28 100.0 33 ............................ CCCGTTGATCGTCTAGCCATTCGGCTAGGTTTA 94490 28 100.0 33 ............................ CGGGTTTTTGCGGTTTGCTTCACCCAGGACGCA 94429 28 100.0 33 ............................ TATTCTACGGTGTAGGTTTTACCGTGCTGTTCG 94368 28 100.0 33 ............................ CCCATGAACGCAATACGCGAGTTTACCTACAAC 94307 28 100.0 33 ............................ CGCTTCACGATGTCGCAAACCACGGCGCAAGCG 94246 28 100.0 33 ............................ TTACAAAAACGCGCCGGGGAAATTCTGTGGTTC 94185 28 100.0 33 ............................ TGGGTTATAGTTGGCGTGCGGAGTTTTGGGACA 94124 28 100.0 33 ............................ TAGTTTAGTGGAAGGAAACGAGAGCATGTTTGG 94063 28 100.0 33 ............................ TCTTCGCGCGCAATGTCGACTCGCTCATGCCAA 94002 28 100.0 33 ............................ CGGTTCGGAAATGGTCTGAATCGAATTAACTGG 93941 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : GTGTATTGATCTGGCATTTTCACTCACGCTAGACATGGCTGGTAAGTACAATAAACACAAAGTGTCGGAAGGCTTTAGGCAACGGGTGATTGAGATGGATTTACTCGCTACCATAAGCGACGATATCGAAGAAATGCTAGGAGGTAAAAATGCTCGTCGTAATAGCCAATGATCTACCACCCGCCGTGCGCGGTCGTATGAAACTTTGGTTTGTTGAACCCCGTCCCAATGTTTTTATTTCGGGAATCAAGGATTCTGTGGGCAAAGCCGTTGTGGATTATCTGTATGAGCACTGTCCACCGGAAAGCGGGCTTATGGTGTTTCGCCGTATCAACGATGCCCCAGGCTATGAAATACGCGGCATAGGTGATACCAAGCGCAGTATTGTCGAATTATCCGGCTTGCAATTGGTGCAAGAAAAAGCGGGGTTGGAATAAAAATGGACTATTCAAAAACACTGCATATTGTTTCAGTATAAAAATTCACCACAAAATGCTGGT # Right flank : TGACACTGGACTTTGAATTGACTTGTGTAGGAGTCTTCCCCCCGCGCACGCGGGGATCGACACCAGCGCAACGAGCGCATCAAGCGCATGTTCGTCTTCCCCCCGCGCACGCGGGGATCGAACTATAAGGACAAAATCTTCATCCGGGTCGTGGCAATATTGGCGTGACCAAGCCATTCCTGCACCTTCGCGATATCGGCCTGATGATCGAGCTCGTTGGTCGCCGAGGTGGCCCGTAGCGAGTGCGCGCCGATTTCAAAGCCTAATTTTCCCGAATACGTTCGCACCAGTTTATAGACGCCATCCGGCGTGATTGCCTTCGCCTCGCCGCTTTTTGTGTTGTGGCTGACCAGCCGGAACAGGGCGCCGGCATCATCTGCGCCGTGTCCGGCCCGCTCCAGATAGTTATGGATCAGCCCGCCGGCGGCCGGATGCAGCGGCACATAGCGGGTCTTGCCGCCTTTGCCGGCCACTTTCAGGTACGGCACCCCGCGCCGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 159922-162698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAERVK010000007.1 Methylomicrobium sp. RS1 NODE_7_length_234531_cov_113.087937, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 159922 36 83.3 38 A.ACTG....A......................... GCAGTGCCCGTCAACAAATTAACTGGCGCGGCAAAGTA 159996 36 100.0 36 .................................... ACAGGAAAGGACCGTTGGCGTTGGAACAAACAAACC 160068 36 100.0 38 .................................... GTTTGCCGTGACAGAACGGCCGGACGGACTGAGATCGG 160142 36 100.0 37 .................................... CGACATAATGGCCGCGGAAGACTTCGAAACCATGCTC 160215 36 100.0 36 .................................... CAGAATGGCGCCAGGTCGATCATGCCTTTGCTCCGG 160287 36 100.0 35 .................................... AAAAAGCTTTTCAAGCGCATTACAAACCCTTGGGG 160358 36 100.0 36 .................................... CTAAGCTGCCTGTGCGGCAGCGGACTCTGACAGCGC 160430 36 100.0 35 .................................... CCCAAACCTTCCTGCGGCAGCCGCCGCGTTTTCGA 160501 36 100.0 35 .................................... TTCCCACGAGCGCGCGGGTGTAATAATGCTCCGGG 160572 36 100.0 36 .................................... CACGGTAGTGCAGCCCGATAACGCCGCAATCACAAA 160644 36 100.0 37 .................................... TTCGGTGGCCGGATAGGGATAACCCTTTGTCGCATAG 160717 36 100.0 35 .................................... CCAGCCATCCGTACCGGCGTCCCTGGCGTTTCATC 160788 36 100.0 35 .................................... GGCGCTTTATGAAATTATTCCTGCCGGCTCCGGCG 160859 36 100.0 37 .................................... GACTTCTAGTTTTTCTTGGTCTCCATCAAATGAAATA 160932 36 100.0 37 .................................... CTCCTTCGCATATTGGCCGCCAGTCCCCCCACTGCTT 161005 36 100.0 36 .................................... AAGGTGAGAGCAAGATGTTATACCTCCAACCAAGTC 161077 36 100.0 37 .................................... CTGGTTTTCGGCATTACCGTCGCCTGCGATTCTTAAA 161150 36 100.0 36 .................................... CTTGATGCGCCGGTCTTTCTCAAAGAGCCTATGCAG 161222 36 100.0 36 .................................... GAAAGGCGGGCAAGGCTCCCTCGAGTTCGAAATCAG 161294 36 100.0 35 .................................... TCCGGACCCCAGTTGAGAGTACGACCTGGCAATAG 161365 36 100.0 36 .................................... GCCGCCATGATCGCGGCCAGCGAAGCCGCCGACCAA 161437 36 100.0 37 .................................... TCGCCCGCGTTCAGCAGTTCGCCGATCACATGGAACA 161510 36 100.0 37 .................................... TGCCAATGTGTAGCAACTTGCTACACTCCGGCAAGAC 161583 36 100.0 36 .................................... GATTTGCTTCTCGCCGCAGCACGGACAGCGCGTCCA 161655 36 100.0 36 .................................... TAGTAAATCTTGATGACAAGTACTACCTGCTGGACT 161727 36 100.0 36 .................................... TGCAGCGTGCTTTGCAACAAGGCCTGAGTTATCTCT 161799 36 100.0 36 .................................... CAGGGGGTGTAATCGTACCGGGAGGCCTGCAGCTTT 161871 36 100.0 36 .................................... CATAGCGGTGCTTTTAAGAGCTCCTAAACCTGTTAC 161943 36 100.0 34 .................................... TGAAGATCTGGCGCACGTGGGCGCGCGTGTCCTG 162013 36 100.0 37 .................................... AATTCGTTTCGTGTCAGGATGTTCATGTTATTCACCT 162086 36 100.0 36 .................................... GAGCCCTGCGGCCATGTGGCGCATGACCGATTCCAT 162158 36 100.0 36 .................................... CATTTCCCGATCTGCGGCGTAAGCCGAGCACTTGAG 162230 36 100.0 36 .................................... AACCGGCGCCTGCCCCGGTTCCGGTTCCGGTTCCGC 162302 36 100.0 36 .................................... GTCGAAGACTAATCCGTAGTATTTTCCAGCTCCGAC 162374 36 100.0 37 .................................... GATCTATGAGCACATGACCCGGTCCGTCGACCGGCGG 162447 36 100.0 34 .................................... CCGTAACGCGGAACAGCGCTGCCCTGCGCTGTTG 162517 36 100.0 37 .................................... AAGGCACACACAAACTGCAAAGCGACGCTCTAACTAG 162590 36 100.0 37 .................................... CGCCGGGATCGGGCTGTACATGCTCTGTGCGGACGGC 162663 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 39 36 99.6 36 GCTTCAATGAGGCCCCGGCATAAGGCCGGGGAAAAC # Left flank : CCGGTTTCGGCGCCGCAGACCGCCGGATAAATCAAACCGTCCGTCCCGCAACGCGCCTGCCTGGCCGGAATATTCGCCTGCGCCAGTTCTTTTTTCATGGTTTTGAGGGCGATGCCTGCGCTCTCGCACTGGATAGCGCCGCTGTATTTTGCCACCGTCACCCAACCGCTTTCCGCCTCGGCCGCAAACGCCGCCGTCAGCCCCAAGCCGAGCCCCAAACAAAACTTTAACCGGTACATCATGAAGCCTCCATTGAAAAGCCGTATCGAATTCGATCGTTAACGTCATATTTTCTCGCAAAAGCCGGCCCGGCCCCGCCAGCCGCAAAGAATCCGATACATTAGAACAAAGACATCACGTTGACAATCCTTCGATTGCCGGCATGTAAAAGCGTTCGGCGCCGAGACCACGAAAAACTTGGGCAAAATGATCCGGCACTAATCTCGCCGCGAAGTCCTACCGGTTCTGAAAGTTTCGTGCGGCATATCAGGGGTTCTAAA # Right flank : CAGCCCGCGCTGAAAGCCTTGAAAACCAAGGCTTAGCGCAGCCAAATGCGAGCGCTGACCTAACCGGCGCCTCAGCAATTATACATAACCCGTAACCCAAACCCATACCCATTTGTAATAACCTGATTTTTAAAGAACAATTCTTCGCGAGCGCTGCCGCTGATTTTTGCGCCACTGCAGCGCTCGCCCGGAACCGGCAAAAAATAGAGCCATCGGCAATTGCTCCATGCATTGTGCTCTCGATCGCTTGTTCCCGACGCGATCTACCTCCCTCATCCATGAGGTCGTCGATCGCTTGTTCCCGACGCGATCTACCTCGCCCTTCCTTGGGCTCGTACCTTCTACATCCCTGTAGTCGTCACACAATCACCGGCTGACGTTCCAGCATTTCAAATTCTTTGCCCAAGCTGACCACTTGCGGCTTGACCGATTCGGCGGGCCCCACGTTGATAATCAGAACATGATCCTCGGTATGATGAATGATGCCGTCCAGCAGAGCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCATAAGGCCGGGGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.80,-14.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //