Array 1 99190-100193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSC01000014.1 Salmonella enterica strain CVM 43811 43811_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99190 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 99251 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 99312 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 99373 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 99434 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 99495 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 99556 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 99617 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 99678 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 99739 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 99800 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 99861 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 99922 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 99983 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 100044 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 100105 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 100166 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 116451-118114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSC01000014.1 Salmonella enterica strain CVM 43811 43811_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 116451 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 116512 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 116573 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 116634 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 116701 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 116762 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 116823 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 116884 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 116945 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 117006 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 117067 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 117128 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 117189 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 117250 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 117311 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 117372 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 117433 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 117494 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 117555 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 117658 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 117719 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 117780 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 117841 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 117902 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 117963 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 118024 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 118085 29 96.6 0 A............................ | A [118111] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //