Array 1 4106610-4106944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059399.1 Nocardia sp. WCH-YHL-001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 4106610 38 100.0 35 ...................................... GGCCCTTGATCCTCGGCGGGAGCGCCGGTGGTAAA 4106683 38 100.0 33 ...................................... GATCAGCCGTTGCAGCACCCGTTCGCGCACGGT 4106754 38 94.7 37 ..................G..............C.... CTGTTTCGGAACACACGCGGCCGCGCCATCGGCACGA 4106829 38 89.5 37 .............G....G..T..............G. GCCGCGCGGAAGCCGAGTTTGTGGGCGGAAATGCAGG TTG [4106850] 4106907 38 84.2 0 AT................G..A....C...G....... | ========== ====== ====== ====== ====================================== ===================================== ================== 5 38 93.7 36 GGCGGCGCCGGACCTCCGCGTCCGGCGAGAATCTCAAC # Left flank : GCCATTCGCGCACGTCACACCCGTTGAGCATGTTGCCTACGACCCCAACGACCAAGCGACGTGTGCTGTTGCGCGGGCTGTGCGGCCACCGTTTGGCCACCACGATCTTGTTGAGAAGACCCAGCGTAGACCGTGAGCGCCTTGTCGACTCCGAACCAACCGAGACCACTCGCGCGTTATCAATCCGGGTGGGGGCTGCGGCAGGGCGAGCTCCGGATTGCACCACGGTCGACCGTGCGGTGCCCCCTGCCGCCGGTCGACTGCCGCTGGACGAACAGCGCCGATGGCTGGAAAAGATCGACAGACCCGGTCGCCGCCTGCATCTCGATCCGCACTATGTATTTCTTTGGACAGAACAGCATCGGTAGAAGTTCGGAACCTCTAGTGCTGTTGCAAAATCAGGTAGGTTCCGAAGTAGCGGCCTGCGAAGGTACGGCTGGACCGACTACCAACAGCGGCATCGGACTGGTGTGTTCCCGCAAGTTCGCAGGTCATCCAGG # Right flank : CTTTGGTGTGGCCATGCTGAAACATGTTGGGGTGTGAGGTTATTCGGAGTTGGGTTGATTGTCAGAGGGTAAGGCTACGTTGGACGGGTGGTTCTTTGGGCGCACAGTGCACGTCAGTCGGTCAACGCGAATGGTGTTCTATCGCTGGGGCCTCGACATGAACTGAGTGATCATTGCCGGTCGACTGCGGAGTGGGCGGCGCGCTTTGCCTCCGTCTTCGGTGCTGGGGAGCTCGCCTATGTACTAGGGCTGTTCCACGATGCAGGGAAGGCAGCGTGCGCCTGGCAGCAGCGTCTTCTTGAGGTCGAGGGGACCGACGACCGAGTCGGGATCGGACATAAGGAGCTCGGTGCGCGTCGGGTCTTTCCGGTCGCAGGGTTGGCGTCGATGGCGATCCTGGGTCACCACGGTGGGCTCACGAGCGTCGCCGATCTAGCCCAGCTTTTGACGTCTCAGGAGGACCGAACGGAGGCTGACTCGATCAGCCGGTTCCTGTCGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGACCTCCGCGTCCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.20,-16.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 4110904-4112023 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059399.1 Nocardia sp. WCH-YHL-001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4110904 37 100.0 35 ..................................... GACACGGGGAGTTCTCCAGCTCGTAGAGCAGCGAC 4110976 37 100.0 34 ..................................... CGATTCTCCCCCGATCAGCGGGCGGTGGTGCGGC 4111047 37 100.0 35 ..................................... TCTTTCCATGTGCCCGAATACATCCCGGGCCCAAA 4111119 37 100.0 36 ..................................... ACCTGGGAAGAAACCACCAAGGGTCACATCCGGGTG 4111192 37 100.0 35 ..................................... CTTGCCGCGTGCGTCCATTTCCAGGGTTCGGCCCT 4111264 37 100.0 35 ..................................... GATCCGATGAGCGGACTTCGCGACGGCTGCCCGTT 4111336 37 100.0 35 ..................................... ACTGACGCGCACGGCTATTGCTGGCCGGGCCTGGA 4111408 37 100.0 36 ..................................... TTCCCGATCGAGGCCAAAAACCTCGTCACCGCACTG 4111481 37 100.0 35 ..................................... CGGCACCTGCTTGACCTACCAGGCCGGCCCGAAGA 4111553 37 100.0 35 ..................................... GGTTGGAGCATCAGCAAGGTTGGACGACTCGAACG 4111625 37 100.0 34 ..................................... TCGCTGGTGACCTGTGCGATGCGGGCGCGTCGTT 4111696 37 100.0 35 ..................................... CGGTACGACCGCTTGCGTGAGGTCACGTTCTGGAC 4111768 37 100.0 37 ..................................... ATCACCTGGTCGAGCAGCTTGATACCGTCCCACCGCA 4111842 37 100.0 35 ..................................... GGCTACAACCCCGCCGCCCGGAAATGGCGTGTGAT 4111914 37 94.6 36 ............................T.......T AGATGGGATGTGATGTGATGAGCGAGGAACCAAGCA 4111987 37 89.2 0 T.....T...G.........T................ | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 99.0 35 GCGGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Left flank : GTGGCGCACGGTCGATCACGTCGAGTTGGCCACCGCCGAATGGGTCGACTGGTTCAATCACCGTCGCCTCTACCGCAATTGCGGTGACATGCCACCTGCCGAACTGGAAGCCGCCTACTACGCTCAACAACCAGCCCAGCAACTCGCTGAGCTGTCACACCAATAAGTCTCCGGACACACCGGGACGATTCACGGGGATCTTCGTCGCTGGAAAGGGCTCTACGACTGGGATCCGACGACTTGCCGTGGTGTCGGCCTCGATGAAGGCCAGATGGAAACCATCTTCTAACCCGTTGAAGAACCGCGTGCTCGGCTGGAATCGAGTCGCGTGATACGGGGGACCGCAGTTAGATTGTCATCGGGTCGGTAGGTTCGGAACCTGTAGTGCTGCAACAAACCCAGAAAGGTTCCGAAGTAGCGATCTGGGGAAATGCGACAGGGCTGAGCCTCCAACGGTGTTCCTGAGCCCGTGTGGGCGCACTTATCGCAGGTCATCCAGG # Right flank : CACATGGTTAGACCTTCCGAAGGTTGCACGTGCCGAGGCTCATTTGGTGGATTCCCTTGGCATCCACCAAATGAGCCCGAATCGCTTTCATAGGGCCGCGGATAGATCGGGTCCTTGAGACCTCAAATTCATACCATCCAGCTGGTATTTCTGATCGAAAGCGTCTGCTGGGAAACGCTTTTGCCTCCTTTCGGGTTCCGGTCAGGCTAAAGTCCAGTGGCTGGAAGTTCCAATCATGTGAAGGGGATCGAATGGGGGGAAGTCGCAACCAAAGATGCTGGCGGTGAGGATGCTGCCAGGGAAACGCATAAGGCTTCAGCGGGGCAGGTCAAACGGTTCGCGTGGCTGACAGCGGAGCAGGTCTTCGTCAAGGCACTGGTTGCAGGTTGTTTTTGGGTGGTAGAGAAGATTCTGAGTCGTTGATCGGAGCACTCGCCAGGTGCGCCGGGTATGTCTGTTTGGCACATCTCCAAACCTGTCGGTGCTGTAGTGCATGATTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 4118161-4120079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059399.1 Nocardia sp. WCH-YHL-001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4118161 37 100.0 35 ..................................... TTCGCGAACCCGGTCCGATCGTTCACTTCGGACTG 4118233 37 100.0 34 ..................................... ACCTCGCTGGCGATGCTGGGGTTGATGGGCGGCT 4118304 37 100.0 36 ..................................... CCCTGGCACATCACCGAAGAAGGCCCGACGCTGGCC 4118377 37 100.0 35 ..................................... TACGTGATCGCCCGCGAGGACCATTCCGGCCCCGA 4118449 37 100.0 36 ..................................... GACCTGCAGCAGCCTGAACAAGCCAGGCCCAGCTTC 4118522 37 100.0 38 ..................................... TGCAGGGATTGGATGGCGGACAGGCCGAGCTCGGCACC 4118597 37 100.0 33 ..................................... CATTCGGGCGCGGTGCTACGGTCCCAGGACAAA 4118667 37 100.0 35 ..................................... TATTTCATCAAACGCGGCGGTGTGATCAGCGGCGA 4118739 37 100.0 35 ..................................... AACGATCGCCGCCGGTAATCAGCACTGGGACAGCA 4118811 37 97.3 35 ............................T........ ACCTTCCCGAGTGGCGCAACGCCGCCGGCCGTCTG 4118883 37 100.0 39 ..................................... GGCGTCAGCGGAGGCTGGAACGTCACGCCACGGCAGCGG 4118959 37 100.0 37 ..................................... GAGCGAGTCGTATTCCAGCGCTTCGGCAGGCCCGGCC 4119033 37 100.0 34 ..................................... TCCGTGGGGCGGCTGCCGTCCCTGGTGCCTTCGA 4119104 37 100.0 35 ..................................... TACGCAAGGCAGAGCCCCCCGAGAAAAGAGATTGA 4119176 37 100.0 35 ..................................... GTTCTGGGTGCCGAGCAGGATCGCGGCCTCGGCGG 4119248 37 100.0 38 ..................................... TTCGCCGTGTTCAGCGCGTTCTGCGCACTGAGGTAGGT 4119323 37 100.0 34 ..................................... TGCCAGCTCCTTTCCACCAGAGGGCCGGTTTATT 4119394 37 100.0 37 ..................................... GTCGGGACTGGCGTCGCTAGCGCGGCCGAGACCGGGA 4119468 37 100.0 34 ..................................... CACAACAAGAAGGCCAGCGTCCAGGTGAGCAGGC 4119539 37 100.0 35 ..................................... CGGCACTGCAGCGTCAATAAGGGCCACACCGAAAA 4119611 37 97.3 37 .T................................... ATCGGCAGCGGGGTCGGGTTGCTGGCGATGACCGTGC 4119685 37 100.0 34 ..................................... CCGGGCGATGGACTGCACGGGCAGCGGTGGCGTC 4119756 37 94.6 34 ................A..G................. AAACTCCACAGCAGCACCTCGTCCGGAACCCACT 4119827 37 97.3 34 .................A................... GAACTCGGGTTGCCTGAGTGGAAGTCAGGTATGT 4119898 37 97.3 36 ..........G.......................... GTAGGCATACCGCGGGTCGTCGTCGGCGGGGATCGG 4119971 37 100.0 36 ..................................... ATGCTGAGCCAGCCACCATTTCGGCCGACGCTGTAG 4120044 36 91.9 0 ..........-G.......................G. | ========== ====== ====== ====== ===================================== ======================================= ================== 27 37 99.1 35 GCGGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Left flank : GCCCAGGCGCGGTTACTGGCTCGGCACCTTCGCGACAGAACCGATACCTACGTACCGTGGACGGTGTCCTAAATGGAGCTACTCATCACCTACGACGTAGAAACCACGACACCTCAAGGCGCGCAGCGTCTTCGGCGTGTGGCCAAGATCTGCGAAGGCTACGGTCATCGAGTCCAGAAATCGGTCTTCGAAGTCACCTGCACACCTGTCACTCGACTCCGGCTCGAAGCAGATCTGGTCAACACCATTGATCCCGCTCGTGACAGCATCCGCATATACCATCTCGACCGCGGGACCTTCGATACCGCAAGACATCTCGGCGCAGCCATAGACCCACCCCACAGCGCACCACTGATCCTGTGACCACAGGACCTCGGAACCCCAAGTGCGACCCAAAATCCGGGCAGGTTCCGAACCGGCGGCCAGGACAAACGCCTACAGAATGCTCTTAAGCTGCTTGCATTTCGCCCCTACTAAGCGAAAAGGGCAGGTCATCCAGG # Right flank : CTGGACCGTGTCGCTGTGTTGCTGGCCCCAGGATGCTGTGCTGCGCGAACCTCGGTGCTGTTCCGCTGTGGTGCAGCAGTTTTCGATTCAGAACGAATGCGGAATGAATGCACATTGGATGCACAATGAATGCACACAACTTCTGCGATTAAAGTGCGATGAAAAATCGCTTCTACCAGTGGGTTTGGTGGTGGTCCGTCTCTCGCTCGACCCCCACTCTCTCCCGCTTCGCTGAAGAGAGTGGGGGTCGAGCGAGAGACAAACCACCACCAAACAAGTAAGCAGAAGATCAAGAAGGGAAAGAAGGTAGTGGGGGAGAAGGGTAACCACAAGGAGGGGGACCACAAGGGGAGGACCACAACGGGAGGGCTTGGCATGGCACGGTGCGGTGGGGGCCGAGTTGCGTTGGGAGTCGGAACCACAAGGGGGAGGGTTGCGTACGCGATGTCACGTCGAACACGGGGAGCAGTTCAACCCAGGACCACAACGAAGGGGTCGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCGCCGGACCTCCGGGTCCGGCGAGAATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //