Array 1 36-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVRA010000106.1 Listeria monocytogenes strain 7547 7547_NODE_113_length_7687_cov_67.126320, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 36 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 102 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 167 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 231 29 93.1 0 .......................A....C | C [254] ========== ====== ====== ====== ============================= ===================================== ================== 4 29 98.3 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : ATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGAG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 4855-7733 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVRA010000103.1 Listeria monocytogenes strain 7547 7547_NODE_184_length_7920_cov_64.977654, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4855 36 100.0 30 .................................... AGCAAGAGCAATGTATTATCCAAGCTGGGA 4921 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 4987 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 5053 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 5119 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 5185 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 5251 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 5317 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 5383 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 5449 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 5515 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 5581 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 5647 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 5713 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 5779 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 5845 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 5911 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 5978 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 6044 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 6110 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 6176 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6242 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6308 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6374 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6440 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6506 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6572 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6638 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6704 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6770 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6836 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6902 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6968 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 7034 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 7100 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 7166 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 7232 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 7298 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 7364 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 7430 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 7497 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 7563 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 7629 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 7695 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [7720,7726,7729] ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //