Array 1 16746-15130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEV010000084.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-32 NODE_84_length_21628_cov_3.273057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16745 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 16683 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 16622 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 16561 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 16500 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 16439 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 16378 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 16317 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 16256 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 16195 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 16134 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 16073 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 16012 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 15951 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 15890 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 15829 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 15768 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 15707 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 15645 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 15584 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 15523 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 15462 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 15401 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 15340 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 15279 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 15218 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 15157 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1124-3021 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHEV010000007.1 Salmonella enterica subsp. enterica serovar Infantis strain SI-32 NODE_7_length_87097_cov_3.471254, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 1124 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 1185 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 1246 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 1307 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 1369 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 1430 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 1491 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 1552 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 1613 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 1674 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 1735 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 1796 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 1857 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 1918 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 1979 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 2040 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 2101 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 2162 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 2223 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 2284 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 2342 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 2403 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 2464 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 2525 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 2586 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 2647 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 2708 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 2769 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 2870 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 2931 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2992 29 93.1 0 A...........T................ | A [3018] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //