Array 1 174785-172678 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRR01000010.1 Salmonella enterica subsp. enterica serovar Braenderup strain 75 NODE_10_length_183663_cov_11.2992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174784 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 174723 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 174662 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 174601 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 174539 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 174478 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 174417 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 174356 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 174295 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 174234 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 174173 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 174112 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 174051 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 173990 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 173929 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 173868 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 173806 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 173745 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 173683 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 173622 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 173561 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 173500 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 173439 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 173378 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 173317 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 173256 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 173195 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 173134 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 173073 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 173012 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 172951 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 172890 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 172829 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 172768 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 172707 29 89.7 0 A...........TC............... | A [172680] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8517-7391 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDRR01000038.1 Salmonella enterica subsp. enterica serovar Braenderup strain 75 NODE_38_length_14100_cov_10.5357, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8516 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 8455 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 8394 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 8333 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 8272 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 8211 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 8150 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 8089 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 8028 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 7967 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 7906 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 7845 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 7784 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 7723 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 7662 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 7601 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 7540 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7479 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7418 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //