Array 1 152877-155250 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPT01000002.1 Serratia marcescens strain 1052 NODE_2_length_392333_cov_4.47324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 152877 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 152937 28 100.0 32 ............................ AACATTGCCCCGAAACTAGAGCCGCCATAGCC 152997 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 153057 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 153117 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 153177 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 153237 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 153297 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 153357 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 153417 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 153477 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 153538 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 153598 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 153658 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 153718 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 153778 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 153838 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 153898 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 153958 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 154018 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 154078 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 154139 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 154199 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 154259 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 154319 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 154379 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 154439 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 154499 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 154559 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 154619 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 154679 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 154739 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 154800 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 154860 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 154920 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 154980 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 155040 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 155100 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 155160 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 155220 28 96.4 0 ....................A....... | A,A,G [155240,155243,155246] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 164100-168136 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPT01000002.1 Serratia marcescens strain 1052 NODE_2_length_392333_cov_4.47324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 164100 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 164160 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 164220 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 164280 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 164340 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 164400 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 164460 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 164520 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 164580 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 164640 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 164700 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 164760 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 164820 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 164880 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 164940 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 165000 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 165060 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 165120 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 165180 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 165240 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 165300 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 165360 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 165420 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 165480 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 165541 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 165601 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 165661 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 165721 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 165781 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 165841 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 165902 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 165962 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 166022 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [166069] 166069 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [166073] 166130 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 166190 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 166250 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 166310 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 166370 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 166430 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 166490 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 166550 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 166610 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 166670 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 166730 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 166790 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 166850 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 166910 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 166970 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 167030 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 167090 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 167150 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 167210 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 167270 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 167330 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 167390 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 167450 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 167510 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 167570 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 167630 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 167690 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 167750 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 167810 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 167870 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 167930 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 167990 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 168050 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 168110 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //