Array 1 185202-187303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUW010000005.1 Erwinia amylovora strain Ea92-1-2 Ea_92-1-2_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185202 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 185263 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 185324 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 185385 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 185446 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 185507 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 185568 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 185629 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 185690 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 185751 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 185812 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 185873 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 185934 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 185995 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 186056 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 186117 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 186178 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 186239 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 186300 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 186361 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 186422 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 186483 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 186544 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 186605 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 186666 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 186727 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 186788 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 186849 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 186910 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 186971 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 187032 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 187093 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 187154 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 187215 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 187276 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 198211-200194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUW010000005.1 Erwinia amylovora strain Ea92-1-2 Ea_92-1-2_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 198211 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 198272 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 198333 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 198394 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 198455 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 198516 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 198577 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 198639 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 198700 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 198761 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 198822 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 198883 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 198944 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 199005 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 199066 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 199127 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 199188 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 199250 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 199311 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 199372 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 199433 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 199494 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 199555 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 199617 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 199678 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 199739 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 199800 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 199861 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 199922 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 199983 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 200044 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 200105 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 200166 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 209658-209986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUW010000005.1 Erwinia amylovora strain Ea92-1-2 Ea_92-1-2_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 209658 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 209718 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 209778 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 209838 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 209898 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 209959 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //