Array 1 66409-64244 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOES01000006.1 Escherichia coli strain IBS19 scaffold_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66408 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGCGA 66347 29 100.0 32 ............................. TGGATATCTCCGATTCCCTGGCTAAATACGAG 66286 29 100.0 32 ............................. TGCTGTACGCGCTGAACACGTCGCTCAGTGCC 66225 29 100.0 32 ............................. CGGTCCGCATCGTCCTGATTGTTCTTACACTG 66164 29 100.0 32 ............................. TCGCCCGGCGTCAGCAGATCAGCGGCCTGCCA 66103 29 100.0 32 ............................. CAGATCGCGCAGCGTCCCGACATCCTGCCGTA 66042 29 100.0 32 ............................. TCAAACATTTGCGCGTTACTGCGTGGATTTGC 65981 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 65920 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 65858 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 65797 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 65736 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 65675 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 65614 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 65553 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 65492 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 65431 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 65370 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 65309 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 65248 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 65187 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 65126 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 65065 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 65004 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 64943 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 64882 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 64821 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 64760 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 64699 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 64638 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 64577 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 64516 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 64455 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 64394 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 64333 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 64272 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92704-92126 **** Predicted by CRISPRDetect 2.4 *** >NZ_WOES01000006.1 Escherichia coli strain IBS19 scaffold_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92703 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 92642 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 92581 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 92520 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 92459 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 92398 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 92337 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 92276 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 92215 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 92154 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //