Array 1 331985-331603 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGL010000001.1 Pectobacterium polaris strain A641-S6-A17 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 331984 28 96.4 32 T........................... AGTAAACAGCCTGCGCGTATGTCAATCGGCAG GA,T [331977,331980] 331921 28 100.0 32 ............................ CGCTGCAAAGAAAATTCATGAGTGGTGTTAAT 331861 28 100.0 32 ............................ GCGTCAGCGGGGCGGGGCGCTGTACTGCGCGT 331801 28 100.0 32 ............................ CACGGCGGGCAATTAATCCCTGTTGTCAGACA 331741 28 96.4 27 ...........T................ CGAAGGGGACGAGACAGCTTGCTGGCT 331686 28 92.9 29 ...........T.....T.......... CATTGCGTAGTGCCCATAACAACACAGCG 331629 27 85.7 0 ...........T.C........-...T. | ========== ====== ====== ====== ============================ ================================ ================== 7 28 95.9 31 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTCACAGTCACTCACTCCCTTGAATTTTACTTAAGTCAATGCACTATTTTCCCTGTAAGGGCACTTTAACGGAAAAATGATGATTTTTAAATGTTAATAATGCCCAACCCGCAATTTTTCATTCCCTAAAAAATAAACTTATTACTTAAAAACGTTACGAAAGAAAGCCATCAATATGCGTTATTTAACGGGGTAAACGCATTGAGCACTTGGCGCAGAGCTACTTCGATAATAGCCAGACAATAGCGCTTAATGTCGCGGATAAACTGCCTGTGCGGCAGTGAACGAACCACCGACAGACAGGTTATCCGGCAGACTTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGGTGCCAGGGACGGTGGTTATCCGTGATAACTTTCTAAGCTGCCTATCCGGCAGTGAACATGGCGAGGCGTTTTTCATGCCACATTACTGCTTTCTAAGCTGCCTATCCGGCAGTGAACGGATACAACGAGGCCAGCAAGAATCAGCAACA # Right flank : CTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGGGAGCTATTCCCCGTTGAGTGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGATGTTCGCACAGGTAGATGCCTTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGAAGGTAGTACGGTTCATTCTCCGGCACTAAACGATTAAAGAAGCTCTCGAAATCTTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGAGCGGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCACCTCCGGTTATCAGGCTTCGCGCGCCAGAATCGGTC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 338628-338120 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGL010000001.1 Pectobacterium polaris strain A641-S6-A17 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 338627 28 100.0 32 ............................ ATCCAGAATGGCATACCGCTGGCCAGCGATGT 338567 28 100.0 32 ............................ AGCCCGTAGCAGTCATAAACACCCAGCGAGAA 338507 28 100.0 32 ............................ TTGGATTGAAAAGGCCATCCAGACGGTAAAGG 338447 28 100.0 32 ............................ AATTCGTTCACCCTTACTGTCAACTTCAATGC 338387 28 100.0 32 ............................ GTCGTCGTCAAACAGGCCAACCTCACGCACCC 338327 28 100.0 32 ............................ GGACGACTTCGTCGAGCCAATGTGGGCTATGT 338267 28 100.0 32 ............................ TGGCTTTCATCAAGCAAAAAACGAATCAGAGT 338207 28 96.4 32 ...........C................ ATGCGCGATTTTCTCAATGCGAAAGAAGAGGT 338147 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAATATTGGCAAGCGTATGAAAACGAAGAGCTGATACTTTCCCCAATGCCCGGCGAACTGTATGTTTCCATGCTGGTGGGCGCATGCATGGCCGCCATCGGCGTTGTGAAATATCGACACGCTCGTCGCAACCCAGTCGCTCCACGCCCAACGAGTGCTAAAACAGTCGCCGCATTGCTGCTGATCGCGCTTTATCTGGCATTCCCTCTGCACCTCTACCTACGTGAACCGCTCCCCTACTGCGCCTTCAGCCCCAGCGGTCAGCAGTTAACAGTGTGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGGGGATTGAATCAGATGGGGTGGAGAATAAAATCTGTAGCGAGCTTCTTCTCAACCCTTTTTTAACGGTTAGTCGTAACTTACTGATTTTTAACCACCCAAAACCGAGACTATAAAAAAGGGTTTTTCTGAAAAAACAGAGTATTCTCTTTAATAATCTGATGATTAGCATGAAATTTTTACG # Right flank : ATAAAACGCCGCAAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCTGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTGGAACAGGCACAGATGATTCTCGGCTATCATGCACGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGGTTGATCAACCACACCAGCGAATACGTTGAACGCTTTCATAACATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //