Array 1 152625-150721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJO01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 152624 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 152563 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 152502 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 152441 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 152380 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 152319 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 152258 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 152196 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 152135 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 152074 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 152013 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 151952 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 151891 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 151830 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 151769 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 151708 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 151647 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 151586 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 151525 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 151464 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 151402 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 151299 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 151238 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 151177 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 151116 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 151055 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 150994 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 150933 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 150872 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 150811 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 150750 29 96.6 0 A............................ | A [150723] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 170249-168756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJO01000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 170248 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 170187 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 170126 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 170065 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 170004 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 169943 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 169882 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 169821 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 169760 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 169699 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 169638 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 169577 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 169516 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 169455 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 169394 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 169333 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 169271 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 169210 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 169149 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 169088 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 169027 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 168966 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 168905 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 168844 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 168783 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //