Array 1 887-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTPX02000037.1 Actinomyces sp. CtC 72 NODE_33_length_34962_cov_22.5053_ID_65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 886 29 100.0 32 ............................. CCATTGGGTAGGCCGTAAGCGGGTAGGGCACG 825 29 100.0 32 ............................. AACAACGACGACGACAACAACAACGACGACGA 764 29 100.0 32 ............................. AGCTGGGAAGAAGTCACGACTGCGGAGCGCCA 703 28 93.1 32 .....-......................G CACGTGCCTCTCCAAGGCGTCAATCAAGTGCT 643 29 100.0 32 ............................. AACAACGACGACGACAACAACAACGACAACGA 582 29 100.0 32 ............................. TTCCACAGAGTAGAGCCACTAGGTAGGCCGGG 521 29 96.6 32 ............................G ATGTGATGCGCGCAAGGAGTGTCGGGCGCGCA 460 29 96.6 29 ............................G GCAAAGCGCGAACAACAACAACAACAACA 402 29 96.6 32 ............................T CGATGGGGACGTGTATTACTGGGAGCGCCGGT 341 29 100.0 32 ............................. TATGGCATGACCATGCCCTACACGTCAAGCCG 280 28 93.1 32 .....-......................T GGACGGGTCGAACGCCAGGGTGGTCACTGACG 220 28 96.6 32 .....-....................... CTCCTCCCCGGCGGCGAGCGTTAGGACGACCG 160 28 93.1 32 .....-......................G GCGCTAGACCGGGCCGGTAGCGACAACGCATA 100 28 93.1 30 .....-......................T ACTCAGGCCAGCGGACCTGGCGGCAGCCAT 42 29 79.3 0 CGTCGA....................... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 95.9 32 GTCGACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCGACGCGTAGTCGCCGGAGGGGCGAACTACTCGGAAGAGGATGCGGGCGGATGGTAGTGCTGATTCTTTCGGCCTCACCCGCGTCTCTGCGGGGCGCCATGACGCGCTGGCTGCTAGAGGTGACTCCAGGCGTATTCGTCGGGCATCTGTCTGCCCGGGTGCGCGAACAGCTGTGGGAGCTCGTCAGGGCGTACATTGGTGATGGGCGCGCCTTGCTCATCTGGTCCACTCGCTCTGAGCAGCACTTCGAAATCGCTTCGCTCGGCCACGACCGCGACCCTGTCGATATCGAGGGCTGCATAGTGATGCGTACCCCATACCGGCAGATTGAGGGAACGACGCCAATTCCCGGTGCCGTGAAGCCCGCTAAGGAATCATGGTCGATTGCTGCTCGACGGCGTCGCTTCCGCAACTCGGCGGAGCGGGCGCTAGGTCAGCAGTAAAGGAATCCGGTGTAGAGTCTGCTGTCGCGCCGTTGGGATTCCAAGGATCTACAAGT # Right flank : CGTGGACAGGCTAC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 167285-166591 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTPX02000041.1 Actinomyces sp. CtC 72 NODE_1_length_225663_cov_24.3254_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 167284 29 100.0 32 ............................. ATTGCGATGGCGATGATGGTCATACTGATTCT 167223 29 96.6 32 ............................C ATCTCAAACGGGTTGATCTCCCCGTTGTTCAG 167162 28 96.6 31 .....-....................... GGTGTAGGCGCCGACGCCAGGTCCAGGATTG 167103 29 93.1 33 ........A...................A GAGCGTCGGCCAGGTGATCGCCGACGCCCTGCA 167041 29 100.0 32 ............................. TTATCCACAGGCCAGGCGGTCAAAAACGGCTC 166980 29 100.0 32 ............................. TTATCCACAGGCCAGGCGGTCAAAAACGGCTC 166919 29 100.0 32 ............................. GGCCTGGTCACCCTCGCTAAGGACGGGGAGGA 166858 29 96.6 32 ............................C GCTCTACTGGACGGCAAGACGCCCGACGAGAA 166797 28 93.1 32 ....................-.......T GCCTTGACCATGGCGGAGGGCTTGCTGATTAC 166737 29 93.1 33 .....................G......C GCAGGCACCCATCCGACCCGCCCCAAGTCAGCC 166675 29 93.1 27 ...........A................C CACCACGCCCGGCCCCGGCCTGGAGGC 166619 29 86.2 0 ..................A...C....AC | ========== ====== ====== ====== ============================= ================================= ================== 12 29 95.7 32 GTCGACCCCGCGCGAGCGGGGATGATCCG # Left flank : GATGTCGCCGCCCAGGTTGAGGCCCTGGTGGAGGCCCACCCTCTTTACCCGGTCCTGACCTCCATGCCCGGGGTGGGGGTCAGGACCGCAGCCGTCTTCCTGGCAGAGACCGCGGGCAAGACCTTTCCCTCCGGCGCACACCTGGCCTCCTACGCCGGACTAACCCCCGTAACCAGACGCTCCGGGTCCTCCATACGCGGCGAGTACGTCTCCCACGCCGGCAACAAGCGCCTCAAACGCGCCATGTTCCTATCAGCCTTCTCCTCGCTGCGCTCCGACCCGGCATCCCGCGCCTACTACGACCGCAAACGCGCCCAAAACAAGAAACTTGGGCCAAGCCATACTCGCCCTCGCCCACCGCCGCATCCTCACCCTATACGCCATGATCCGCGACGGCTCCCTCTACGACCCCCAACCAGCCCAGCAACAACTACCCGCCGCCGCTTGACAAACCACATAGGGGCACCCCCCAGGCGTGTGCGACGAGCCTGACTTCGGGC # Right flank : ATGACCTAAGTTGAGCTGTCTATGACCTCACTAAACGGCACCGACACTGATGGCAAGCCGAAGCGTAGCTTCACGACTCCCCGTGAGTTCATCAAGTTCATCGGCGTAAGCCACAACCAGGTCATCCACACGCTCACGAACACGTGCAGCCACGCCACGCCACCACGACGCCCCGAGCGTGCGTGCCCGACCGGGTGGCATGTCGGCGTCCTGACGCCACACCAGGAGCATCGGCTGCTTCCGCTCGGCGGCTTCCGCCACGATGGCATCCACAGCGTTGCGCGTGTACACCTCCAGCTGGTGAACCTCCGCTGCCACGCCAGGCGGCGGCGTATACTTACCCTTCTCCCAGTTTTGGACCGTGCCCTCGGATACTGCCAAAAGCTCAGCAATCTCCCGTCGCGACAGCCCTAGATGCTCTCGGACTACTCTGAACTCCCCGCTGTACATGATCACCTTCACATAATGCGCCGCTGCGTTGCCGTATGAATAGGCGTCCA # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15734-16208 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTPX02000026.1 Actinomyces sp. CtC 72 NODE_18_length_56430_cov_21.7574_ID_35, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 15734 37 100.0 38 ..................................... GTGTTCTTGACATGGTGATCGAAGGCTCGCTTGTATGA 15809 37 100.0 35 ..................................... CGGGGGAAGGACGATCACGTCACGGCCAATACTGG 15881 37 100.0 34 ..................................... ATACACGGTGCGCCAATGGCCGTCGCCGACTCGC 15952 37 100.0 38 ..................................... CGTTCACGAACCGTGACGTGTCCGCCTGTGCCGGAACC 16027 37 100.0 38 ..................................... GCAACAAGCCGGCCGGGGCGAAGCACACCATCAGGATC 16102 37 100.0 33 ..................................... GTGCAGCCGGGGTGGGTGACCTGGTGGATGGCC 16172 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 36 GTCAGGAAGCACCTCGCACCTTCAGGTGCATTAAGAC # Left flank : GGGTGCGCCGCGTACGGCATCTGGGGATGCTTCCTGATCTCTGGGGCGCGTTTGCAACGCCAGTTCGTGCTTTACTACGCCACTTAGCGGTCTGCTGTATAGCGCTGCGCCCTTCAACAGAACGTTAACTGGCGTTGTTAACGGGGAAGTGGCGTTGTAAACGACCCTGCGGGGTGGTGGAGGACGTGGCGGCCGCGCCGGGTGTGGCTGTAGTCGGCGGGTGTGGTGTGGCGTGTGTGGGGGTGGCGTGGCGTTCGCCGAAAAGTCACGGTCGGATATACGGTACAAAGTTTGGTACGTTTTGACCCTGACTTTTTCGCATGGCCTCGTTGAAAGCTGGTGGCTGGAGGGGCCTGGAGGGGTGTCGGTGGCGCTTGGCTTGTTTTCAACGAAAAATGGTAGTTTTGGGGTGGTGCCAGTCGGTCTCGTGGGGTGCTTGCGGGGCCGGTGGCGATCTCGAGCCTGGAAGTGGCGGTATGGCGCGGTTTCTAGGGGTAGGG # Right flank : CAGGACCGCGAAAATGCACTCGCGGACGGCCTTCGCCCGTCAGGAAACACCTCGCACTGCTTACTGGCTGGGATGTGCTATGACCCGAGATCGGGTGGTCTCGGGCGTGCGGCGTCGTCGATGACGCTCTCCGGCTGGTCCCGGTGGGAGGCCCATGAACGGTGTGTCGACGACCAGCGGATGACGGGCCGGTGTGCTTGAGGGCGCGGCACCGATATCGAAACGCGCATGCCCGACTTGCGCAATACGAAATACGACCTTGGGGTGTGTTCCACGACCCCGGGGTGGTCGTGGAACACACCCCAAGGTCGTTAAACGTCACGAAGATCATGGAAGTTTTCGTCACGGTCGTGCGGAACGCCGCCTTCAACCACGACCAGGCGCCGTGGCCCTGCCGGACGCGTCGGGTGCCTCGCCAACTCTCCCGCCTCGCCCTCCCGGCTCCTGCGACCACTGACCGGTTCCTTGATCCGCTCATCTGGAGAGGTGATCCGCCGCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGGAAGCACCTCGCACCTTCAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 2823-4303 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTPX02000039.1 Actinomyces sp. CtC 72 NODE_8_length_120042_cov_25.671_ID_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2823 37 100.0 35 ..................................... TGGTCTCACCGTCCGCACTGGTCAGATTGCCGTTC 2895 37 100.0 38 ..................................... GGATTGTTTTTTCCAGTGTGAGTACCGAAGCGGCTGTG 2970 37 100.0 36 ..................................... TCCTGCGCGAGGCCGTGACTGCGAACCCGGTCGAGC 3043 37 100.0 34 ..................................... GTCCGGGCGTGGCTTGCCGCCGGGACGCTTCAGC 3114 37 100.0 33 ..................................... TTGGAGGCCGCCGCATCAACCATCTTGTACCAG 3184 37 100.0 35 ..................................... CGTACGCTCCGCGCATTCCCACTGCAGCTCCTCGT 3256 37 100.0 35 ..................................... CCCATCGAGCCCGAGGACGTCTTCCTGATCTCCAA 3328 37 100.0 33 ..................................... GTATAGGGGCGGATCTGGTACTGGCAGAACCGG 3398 37 100.0 39 ..................................... CTCGAAGCGGTCGTGACGGATCGTCGGGGCCTCGTGGAG 3474 37 100.0 35 ..................................... CCTCGGCCTCTTGCTCGCTCATCTCCCTATCCACG 3546 37 100.0 35 ..................................... GAAAGCAATAATGTCGCCCTTCTGCAACCCCTCAA 3618 37 100.0 33 ..................................... CGGTTCTGCGGTTCGCTGTGATACCGGTTGTCT 3688 37 100.0 33 ..................................... CCGATGCGGGTGCCTGTGTCGGTCCAGTCGATG 3758 37 100.0 37 ..................................... CAGAACGAGCGGACACCGACTAGTACAGCGTGGTCAG 3832 37 100.0 35 ..................................... CCTCGCACTCGTCGGCTACGATCTCGGCATTGATC 3904 37 100.0 37 ..................................... GTTGAGAGTGCTTCTTCTTCCAGTGCGAGTCCCGCAG 3978 37 100.0 37 ..................................... GCGGTGAATGACGCCAGAATGGGCTGAATCGGTTCAA 4052 37 100.0 37 ..................................... GCGGGCCAGGTCGCGAGGCAGGTCTTCTCCACGTCGA 4126 37 100.0 34 ..................................... GATGACGCCGCATCTCGTTGCGGGTAACGTCCGC 4197 37 100.0 33 ..................................... CAGTAGCGGCGCGTGCCAGTATGTCAGGGCCTC 4267 37 86.5 0 ...............................GG.CGG | ========== ====== ====== ====== ===================================== ======================================= ================== 21 37 99.4 35 GTCAGAAAGCACCTCGCACCTGAAGGTGCATTAAGAC # Left flank : ATGCCGGGTTGCTCGGTCATCTGGCCGACGCTGTAGGCTTGGGGCCGTGCAGATTGTGCGGTGGCCTGGCCGCGAGGGAGGGGAGTTGGGCCGCGCGTTCGGAGGAGATGCCCTCGGGGAGTTCGAGCACGCGGCCCCAGGCGGCGTGCAGGCGGCGCGGCGTCAAGGAGAACCCATCGGGGGCGTCGAATTGGAGGAAGACGGTGCTGGGCATGCCTCGCTCCTCGGGGTGTGCGGGTGGGATGGGTTGGTGGCGGGGCGGGTGGCGCCGCCACGGGTTCAACTGTGTCACACGTGCTCGGGGCGGGGCGAGAAATCGGCTTAAACGCGTTGGCGGCCGCACGGGCAGGAGCCGGTAATGGGAATCGGCGGCGAATGGCGGTATCGCGGCGAAATGTGGTACTTTGCAGCCGGTGCCAGCCGACGACGTGGGGTGCTTGCGGAGCCGGTGGCGATCCAGGGCCTGGAAGTGGCGTCATCACGCGGCTCTCAGCGCCAGG # Right flank : GTCCAGCAGCGAGGTGCCAGGCATCGCGGGTCAAGGTGCTAGCGTCTGAGGTTGTCAGCGCTGCCGGAACTCCCGCGCCTCGGTCGTCGCCTCGGCGATACCTCGCTGTCCGGGGTCCTCGGTATCCCTGCATGGCCCTCCGGGGAATCGATTGGGCATCGCTCTCAGCGTGCTACGACTCGATCCCTGCCCATTGCGGCTGCTGCAGGATTCGAGCGCGCCGCGCGGTGACGTACACAGGACAGCACACGGTGTCAGAACAGCTGAGTGATCAAACCCTCAGGCTACACGCGCACGGCCAGGTTCGTTGAGTTATGTTGCTCATTATGCAAGTTCCAGGGTTGGACTTGCTTTTCCCGCAGTTTTGCTTGCGCGGTCGAGAACTCGGCGCCATACTCGATCGCGGCAGCAAATCTGAAGAGAGGTTCAGAATGACTCTCCGCTCGGGGCGCTACAAGCGTCCACGTGCACGCTCCGTTGCTTTCGATAACGTCGACACA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCACCTGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //