Array 1 243986-244964 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378888.1 Streptococcus sp. oral taxon 058 str. F0407 Scfld391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 243986 29 100.0 42 ............................. TTACCACAGAGCTTGAGCCTCTCGGCTCAGATATTCAGTCCC 244057 29 100.0 47 ............................. ACTTAGCATTAAGCTAACCAAATCTCTCGTAGATTTATCCGATCAGT 244133 29 100.0 35 ............................. TCTATCTCCCACGTTAGGATATGATGAAGCAAATT 244197 29 100.0 46 ............................. ATCCTTGCTCAGCATAATTCATAATTTTTCACCTCTAATTTTTTAA 244272 29 100.0 41 ............................. TTACCTGGGTCAGGAGTTGGTGCTGGATCTGGAGTTGGTTT 244342 29 96.6 39 ...C......................... ATCTTCAAGACTATTTCGTCATCTTTTTTAATGAACTGT 244410 29 96.6 41 ...C......................... TCTCTAATTTTTCTAAATTCAATATCTTCCAACCATTTTCC 244480 29 100.0 41 ............................. TTGAGAGCTTATTCTTCGAGTATTCATTACTGTTATTTTTT 244550 29 100.0 46 ............................. GATTCTACTGATGGAACTGAGCTTGGATTTGTTAGTCCGCTATAAT 244625 29 100.0 39 ............................. ACTAACTGGTCTTTAAATGACATAATTCATCCCCCTTGA 244693 29 100.0 60 ............................. ACGCACGCCTTACCTAGAATATCATCTGGCGACATATCTAGAACAGTTTCGTCGCTATGC 244782 29 93.1 47 A..C......................... TTTTTCCAGACGTTACAAATCTCAATTGTTGCTTCAAGTTTAATAAA 244858 29 100.0 49 ............................. CCATCTATATTTCCCACCGGTACATCTATTTGCTTTGCCCGAGCTACAG 244936 29 82.8 0 ...C.....................GTTG | ========== ====== ====== ====== ============================= ============================================================ ================== 14 29 97.8 44 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGGGTGATTTTGAGTTTGATCAATAAACATCAAATTAATGCTACAGAGCATTTTGAAGAAAGGGAAGATGGCTCGTTTTATCTGAATCTTGAAGGGAAGTATATCGTCTTGCGAAGTTTTGAGGACAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATCCGGCAGTTTAAGAGAATCTTGCAGCAGGATGGGGACTTAAAACGCTTAAAACCTTACAAATACTATTAAAAAGTCGGTCGATCTTTTTGATATTTTGTCTCTTTTTCAAAAGCTGTCAACCAAGCGTTTTATGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGGAAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCTTGGGGAGATGTTTGAATTGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATTTAGTCACCATATTTTTGTCTTGCCCTTTGCGGCCAAGGGGCTGGAGTCTTTTCCGAAGTCTTCTAAGTGGAGGAAACTCAGCCAAGATACCAATGAACTTCCCTATCTAAACTTAGATGATGCTGAAAAAAGTGAGCGGCTAAAGTACGCTTATCGCCGATATTTCAATAAAGAAGCAGAGGAGCTGATTTTCCGCAACCCTGAGTTGGTCACAAACTATGCTTATACTTGCTTAAAAAAAGGTGACGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAGTATTATGACCTGACACTTGACTATATCATGCTTCGTTATTTTCCAAACTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTACTATGATAAAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 246643-247259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378888.1 Streptococcus sp. oral taxon 058 str. F0407 Scfld391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================= ================== 246643 29 100.0 43 ............................. CATCTTTTGCCACTCTGGGACAACCGATTTAAAGGTAAATTTG 246715 29 100.0 38 ............................. AATTTTATTATTTGAAGCGTCAAAAAAGCTAAATCCAT 246782 29 96.6 43 ...C......................... GTTTGGCTTGACCTTGTCCTTGATCAGGTTTTTGATCTGGATC 246854 29 96.6 41 ...C......................... CTGAAGTAATCTTCGGGCATGATAAGAGCTGCAGAAGCACC 246924 29 100.0 40 ............................. ATTTTCAGCGATTCCATAATTGGCTTAGATGGGTCTTCGC 246993 29 100.0 65 ............................. TAGTTTGAAGCTACGAATTCAGCATGAGCGTACAAGTCTTCCACTGAAGCACCTTTCACCAATTT 247087 29 93.1 46 ...C................G........ ACAAGGTTTGATTGATAGCCATTGCCAAAGTCGATTTGTTTAAAAT 247162 29 96.6 40 ...C......................... GTTTTTGGTTGACCAGTTTCTGGGTCAACCCCTGTGAAAG 247231 29 79.3 0 ...C..................C..GCTG | ========== ====== ====== ====== ============================= ================================================================= ================== 9 29 95.8 45 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : AGTTTCTGATAAACTGAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATTTTTGCTTCCAGAGCTATGCCCGCAGGAGCAAGCAGTGGAAATCTACGAATTGTTGCAAACCTCACTCTATATCGAGAAGCATATCAATCTCCTAGATAGTCAAATTAGTGAACTGCATGATATCAGCCAGACAGAAGCAAGTAATAAATTGAATGACAGAGTATTAGTGCTAACCGTTTTAAGTATTGCGTTAGCAATTGTTCCGAATATCAAAGAACTGCAGGATAATTATTTGACTATATGTAATCTGAGTCTGGCTTATTCATCTTGGCTTACCTTGCTCATTTCTCTTCTGACAATTGCTTACTTCTATTTCAAAAAGAGAAAATAAATGTATATTATCTTGACATATGATGTGCATCGCAAGCGCGTGGCTAAGGTTTTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : GTGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTGGGAAGCATGAGAATTTGTTCGCCTTTTGTTTGGTAGGAATAGTTGAAATTTTTAGAAAACGCAACATATAAATGTGAATAAAAGTTGTAGTAGAGCTACTTCCTTTTGTAAGAATTATCAAGAAAAACTCTCTTAGTAGGAGAGTTTTTCTGTGTTTCAACCACGATAGTATAGAGCTTAAGTTAGATGGCTGATCAGTTTTTTGTTACTTCATGATAGTGTCGCGAATATTTATTGGTCTATTGGGTTAAATTAAAAACATTATTTTCTATTTCATTTACCAAAAAAGCACTGTAATACAAGTAATCAATCCTACTGTACTAGTCTTTTTTTAGCTTATCTATGGTATAATAGAAGGTAGATTTATCAATTGGAGTACGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGAACCTTTCTAGATGGAGAGGGGC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 197292-199202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH378887.1 Streptococcus sp. oral taxon 058 str. F0407 Scfld232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 197292 28 100.0 33 ............................ CAGGATATGAGCTTGTTATCCTTCCATTTACAA 197353 28 100.0 33 ............................ TGAGATAGCCATGATTGAGAAAGGAATGATTAG 197414 28 100.0 33 ............................ TTGGTTTCAGCGATTTTCATTCGTGGTGTTTAC 197475 28 100.0 33 ............................ TATGATCTTGATGCCAGTCTCTATAAAAGTCGG 197536 28 100.0 33 ............................ CTCTTTAAAAATAGGGAGTAGCAGTGTTGCTAA 197597 28 100.0 33 ............................ TCTGCTTACTTGCGCGCTTGCCCTCGAATGTTG 197658 28 100.0 33 ............................ CGGTTAATCTAAGCAACCTAAGAGCAAATCAAT 197719 28 100.0 33 ............................ TGTGACTTATCAGGTGCCGATTTTGAAAAATGA 197780 28 100.0 34 ............................ CAGCTTTATCCGTACTAATAATGGAAGCACTGAA 197842 28 100.0 33 ............................ TTCGCTCTCCAGCGCCACAAAATCGTCAAGCAA 197903 28 100.0 33 ............................ TATGTCCGCCCGTTATTGATAAAGCGCATGTAG 197964 28 100.0 34 ............................ TATGTTCGAAACCTTTAAGGACAAGCTACGTCCA 198026 28 100.0 33 ............................ TGCAATGACATTTGGTCAATCGTTACTCATTAT 198087 28 100.0 33 ............................ TACCTGTAATATCGTATCCATTGTGGCTAGATA 198148 28 100.0 33 ............................ TAAGATAAGGAACAAGAGCAAATGTGTTGTAAG 198209 28 100.0 33 ............................ TGGTGGCATGCCTACCTTTGCCTATGTAAAGGT 198270 28 100.0 34 ............................ TGGCTTATCATTTAGAAGACCTTTTAAAAGGTTT 198332 28 96.4 33 .............A.............. CACCACTTGGCGCCGTTCGTTGGTAAGGTTCAT 198393 28 96.4 33 .............A.............. TTTGTCAATATTCTTTGTACCACTTTAGATAAA 198454 28 96.4 34 .............A.............. TATTATATGAGCATTTGCTAATAGCCTCAAGTTA 198516 28 96.4 33 .............A.............. TGACCCCTTGGGTAAGGTACATGACTTCCTTAC 198577 28 96.4 33 .............A.............. CAGGTAAGACTACTTCAGCGCGTATCTTTGCAA 198638 28 96.4 33 .............A.............. CATGATCCACGCCTATGAACAGAACTTGGACTT 198699 28 96.4 33 .............A.............. CTTGTGGACTGGTTCTTGCCAACGATTTCAGCA 198760 28 100.0 33 ............................ CAGGCCACACCTTTTCAGACGGGACTGGAAATT 198821 28 100.0 33 ............................ TGTGGTTGACTGTGTGCCTGTCTTAGTAGATCC 198882 28 89.3 17 .............A............GT GTGTGTGTGTGTGTGCC Deletion [198927] 198927 28 96.4 34 .............A.............. TTTTCGATGGATACGAGAAATATCATGCTTTTTA 198989 28 96.4 33 .............A.............. TAAGCCATCTTATAGGTCTTAAATTTAATATCG 199050 28 92.9 33 .............AT............. CGCCGTAGAGCAGGTCGCCTCTGAGACCGGCTT 199111 28 92.9 33 .............AT............. TATTAACCGCCAAAGCTCAAGTTTTAAGCACAC 199172 28 92.9 0 .............A............A. | AT,C [199194,199199] ========== ====== ====== ====== ============================ ================================== ================== 32 28 98.0 33 GTTTTTCCCGCACTCGCGGGGGTGATCC # Left flank : GAGAATGAACATACCATTATAGAAATTGGGGCACTTAAGGTTACTCCATCCACTACAGAAGAGTTTAATGCTCTTATCAAATATGACGGAATCTTGCCTACGAAGATTTCTAAATTAACGGGAATTTCTCAGACTCTATTAGAACAAAATGGTCGAAATTTAAAAGAAGTACTTTCCGATTTTTTGCTTTTTATAGGTGAATCAGCTTTAGTTGGCTATGGTATCAATTTTGATGTTAAGTTTATTAATAATGAGCTTAACAAGTTGGGCTTGCCTTTATTATCAAATAAAACTCATGATTTAAAGAAATTTGTCAAGAGTGAAAAACTATTTCTGGCTAACTATCAATTACAGACAGCTCTTAAGGAATATGGAATTGAAGAGGTAGTTCCTCATAGAGCTTTACCGGACGCTAAGTTAATCTATCAGTTATCAACAAAAGTGAATAAATTTTTGAATAGAATCAATCGGGATTAGCGATTTCAATGGGATCTTTTAGT # Right flank : CATAAAATGAGATATAAGAAAAATATTCCTATTGAAAACTGATAAATTAGAGATAGGAGTGTTTTATTATAGGAAAAAACATATTTTGTGTAAATGAAGATATCTTACATAACAAAGGAGAAGACAAGTAAATTGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTTTAGAAGAGTATAAGAAAATTTGTCTTTTATCTGTTGTCTTAGAGTGTTTCAGAATTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTCTGCCAAATCCCTAGCTCTCCTAGCTGGTGCTAGTGAGTCCGAGGTTGCTCCCCTAGTTGAGCGCCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCAAGCATTATCTCGAAAACTTACGATCATAAAAAACTCAGACAAATTCGTCTGAGTTTTCTTGTGTTTAAATACTTTTTCCAGGTAATAGGGTGACTGGTAAGAAAT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACTCGCGGGGGTGATCC # Alternate repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //