Array 1 1601-433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMA010000078.1 Chromobacterium haemolyticum strain HSC-31F16 NODE_78_length_11446_cov_17.101952, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1600 28 100.0 32 ............................ AGCCGCGGTTAACGACCATGGCAGACTGCAGA 1540 28 100.0 32 ............................ ACAGTCAATACGATATCGGCCAGACGCCACCT 1480 28 100.0 32 ............................ ATCGCGTATCTGTTCTTGCCGGGACCAGACAC 1420 28 100.0 32 ............................ AACAGTATCCAGTTTCCCCTGGGCTTTCAGTG 1360 28 100.0 32 ............................ GGCCGGATCCGCGATGGCGACGGCGGTCAGCT 1300 28 100.0 32 ............................ TCGATGCCATGCGCCAGTGATGCGGCCGCTGT 1240 28 100.0 32 ............................ TGGGACAACTCCGGCAGGATCATGCCAAGCAT 1180 28 100.0 32 ............................ ACGATGGGGCCTGGCTGCGATACTGGCGGCGG 1120 28 100.0 32 ............................ ACAATTGAACAAGCCAGCCTTCACGTCATCAT 1060 28 100.0 32 ............................ TTTCAGATAATCTTGATCTATCTTCATTTTCC 1000 28 100.0 32 ............................ CGGAGATCAGCAGGTTGAACAGCCCCTGCCAT 940 28 100.0 32 ............................ AATGCCGATCGCCGCGCCCTGGGCGATGTTGT 880 28 100.0 32 ............................ TTGATGTGCCAGAGTGACGGCCGGAGTGCGGT 820 28 100.0 32 ............................ ATCTGTCGTCATTTGTGATAGCTCCCGTGATC 760 28 100.0 32 ............................ GCGACGCGGCCGGCCGGCTGGGGGTGCGCACT 700 28 100.0 33 ............................ GCGATCAACAGCTACCTGAAGCGCGGCGTGGTG 639 28 92.9 32 A.............G............. CTTCATCAATGCCGGCGCCGCGCATTGAGTCG 579 28 92.9 32 ...........T..G............. AATCGGATTGCCAAGAAACAGCCGAAATGGAA 519 28 96.4 32 ..............G............. ATCCACAACTTGACCTGATGGCCGAATGGCGG 459 27 75.0 0 C............C......-..CCCC. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 97.9 32 GTTCTCTGCCGGATAGGCAGCTTAGAAA # Left flank : CACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAAGCCTGGCAGGTACGGCGCAAGCAGGCCAAGACCAACCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGCCTGACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGTTACCAGCTGCACATCGAGCAACGCCCAGCCCCGGCCACCCACAGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTTGCTACCCGCCGCCAAGCCTGTTAAATCAGGAGCTTGGCGCGGGGTGGGATAAAAGGGGTTTTATTGGGGAAAGCGATGCTTTCCCCCGCTGGCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : AAAACAAAATCAATGCCATATTAGGCATCTAAATTGACACCAAACAGGGAGAAATCATGGACTTGGTACTTGCCGATGTAGCCGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCCGCGGGGCACCCGGTGGTGATCCTGAATCACAACCGCCCGGAAGCCTATCTTGTTCCTGCCGCCCAGTACGAACGCATGATGAAGCTGCTTGAAGACATCGAGGACGCAAAGTTGGTGCTGGAACGTCGGCAGCAGCCCACCGTCAAGGTGGACTTGGATGAGCTATGAAATTGTCTTCCGGGTGGATGCGGAGAAGGAATGGCGTAAGTTGGACCCATCGATTCTGAAGGCTAAAGCGCGCCAGGGCTGAGCCGACGCAAGCCCGTGACAGCGTGTCCGCGGTTCTCACTCTCCCAACC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 78384-81593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOMA010000023.1 Chromobacterium haemolyticum strain HSC-31F16 NODE_23_length_81717_cov_16.235691, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78384 28 100.0 32 ............................ AGGAACCGCAGACCTTTGTCGCGCAGCAAGAG 78444 28 100.0 32 ............................ GTCCTCTTGCTCAATGCGGATATGGAGCATGT 78504 28 100.0 32 ............................ TTTGCCGTTTCTGAGGCTTATCGCTACTTGAA 78564 28 100.0 32 ............................ TGAAAGAGGCGCTAGAAAAGCTGGGAGACATC 78624 28 100.0 32 ............................ CGAAAAGCACGACAGAACGCGTCAAAGAACAC 78684 28 100.0 32 ............................ GTGCGGGGCGCAAGAGGTGACACATGGAATAC 78744 28 100.0 32 ............................ TCAGCGTCCAACGCCCACAACCGGAACCAGTT 78804 28 100.0 32 ............................ CTACTACGCCGGCTCGCTGGCCGGCTAGTCCC 78864 28 100.0 32 ............................ ATGTACACCGAAACTATATACCCTGAAGGTCC 78924 28 100.0 32 ............................ TCTATGGGGTTAGTTTTGTTCTTGACAGATCA 78984 28 100.0 32 ............................ TGCTAAAATTGGTTAACAACCAACTGCTCTCA 79044 28 100.0 32 ............................ AACAACAACTATAGAGAGGCCCGCAAGGGCCT 79104 28 100.0 32 ............................ ACAGCGGGGCCCCTAGGGGCGCGCGAGCGCGG 79164 28 100.0 32 ............................ TTGCAGCCCGGACGAACTCGTTCGGGCTGTTT 79224 28 100.0 32 ............................ TTCTAGTTACGATGCTCAGCGCCGCGCCAAAT 79284 28 100.0 32 ............................ TTGATGAACTCATGACTGATGATCCGATATTC 79344 28 100.0 32 ............................ GTCGTAGCTTTTGACTTGAGTACCGCCGTCAA 79404 28 100.0 32 ............................ TTGATGAACTCATGACTGATGATCCGATATTC 79464 28 100.0 32 ............................ AAGAGGAGGGCGCTGCGCAAGTACTGCCCGCG 79524 28 100.0 32 ............................ ATGTCGAAGCTTATTCGTTTATTTGACACGGA 79584 28 100.0 33 ............................ CTTAAATTTGGCGTTGGTGACCGGTACTGATTT 79645 28 100.0 32 ............................ CGCCGCCGGCAGGCCCAGAACCCGATGTTGTA 79705 28 100.0 32 ............................ TTGCGCCTTACAGCGTCGTCGGAGGCGTATAG 79765 28 100.0 32 ............................ AAACCAGCTTAGGTACAGGTTCTGCGCCAGTT 79825 28 100.0 32 ............................ CGTTGTGTGAGTAATGTTTTGTTCTTAATCTT 79885 28 100.0 32 ............................ TGGTGAGTCATTTGGCACCGTTAATGGTGTGA 79945 28 100.0 32 ............................ ACAAGAAAATTCGGCTCAGCAAAGTTCAAGAT 80005 28 100.0 32 ............................ TGAAAGAGGCGCTAGAAAAGCTGGGAGACATC 80065 28 100.0 32 ............................ AGTCTTAGCCTTGACTGGCTTATGAAGATGTT 80125 28 100.0 32 ............................ GCCATCAACTGTTGGCGAAATGGTTGCGGCCG 80185 28 100.0 32 ............................ TGCCCGGCGCCGCGCGCCGGGGTTTCATTCGG 80245 28 100.0 32 ............................ CCGGAACTTCAGCTACGGCGTCGCCGGTTTCT 80305 28 100.0 32 ............................ ATTCGAAAGAAAATCGTTGCATCGAAAGTTTT 80365 28 96.4 32 ..................C......... TCGATCAGATACTCAATCGACTTCCTCATAAC 80425 28 100.0 32 ............................ ACCCTCCGTTCAAACTCCTCGATCAGGACGGT 80485 28 100.0 32 ............................ TCCTCGGCGTCGCTGCGGACTTTGGTCCAGCT 80545 28 100.0 33 ............................ TGCTGGCGGCGACGAGGCCCGGCGTGACCTTCA 80606 28 100.0 32 ............................ TACAAGGGCGAAGTTCGGCATGGAAAGCTGGC 80666 28 100.0 32 ............................ AAGAATAGCGCTGCTGAGGCCTGGAACAATGT 80726 28 100.0 32 ............................ TGGCTGCAGGTCTTCGCGGCGCGGCACGACTT 80786 28 100.0 32 ............................ GCTGAGAGCCAGGTTCCGCTTGCATGGCGCTA 80846 28 100.0 32 ............................ AAGTACTCAGCCCAGAAGTCTTCCAGCAACTC 80906 28 100.0 32 ............................ TTGTGTTGCTTGTGCCATACCACAAAGAGGGG 80966 28 100.0 32 ............................ CATGGTGCCCAGCTTTTCGGTCAGTCGGCCGC 81026 28 100.0 32 ............................ AACGCCCCCACCAGCGCCAGCACGGCCAGCAA 81086 28 100.0 32 ............................ GTAACCAGCACAGCCTAGAGAGCCGCGTGGAA 81146 28 100.0 32 ............................ GGCATGCGCGCCGGCGAGATAGTTGGACTGAC 81206 28 100.0 32 ............................ AGTAGGGACGAGTGCGCAACCCTTGCCGAGTT 81266 28 92.9 32 ............G...A........... TTGACGCGCACCACGACAATCAGCGGGCTGGT 81326 28 96.4 32 ............G............... AGGAAGCGCACCAGCAGCTTGCAAACCCTTAG 81386 28 96.4 32 ............G............... AACCAGGATTAGCAGCCAAGCAGCCCACCGCC 81446 28 100.0 32 ............................ TGTCCATCAATCAGCAGTAGCGCCAGCGCACC 81506 28 96.4 32 ............G............... ACGTGTGCGTAGGTATCACGCGCTGCTGACGG 81566 28 85.7 0 ............GC............TG | ========== ====== ====== ====== ============================ ================================= ================== 54 28 99.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CTCCAGCTCATTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAACCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAGGTGCCGGTGCCCAGCAGGATGCAAGTGGTGTTGGCGATGGGGATATTCCAGTACAGCGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACCCGGCAGTGTTGCAGATAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGGCGATACCTTCGGGATGGAACGCGATGGCCTATTTTGCCATGTGCATGAATGGCATGGCAGCCTGCGCGACAAACCCTTTTTTTCAGACCCCTGGGGCCTACATTTAAAAACAATGACTTAGCGATAAGCTGGAAATTTGGGTCAAAGCCGGAAGAATCGCTGCAAATGCCCACGACATAAGGAATGTGGGCGGTGTAGACTCTA # Right flank : TAGAAGTTCAGACCTGATCTGACAGTCTCCCGTTTTGACGGCACCCGACTGTCAGATCAATTCAAGTTGTCTACCTTCTCCCTCCATTCCCGTTTGCCATCAATAAAGGTTTGTACGGGCGTGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //