Array 1 1030280-1035165 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015407.2 Bifidobacterium animalis subsp. animalis strain YL2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 1030280 29 100.0 32 ............................. TATCGTCACACCAGCCGCCTTCATGGCCTTGC 1030341 29 100.0 32 ............................. TAGCGTACGGGTGCCACGTATTTGTTCCAGTT 1030402 29 100.0 32 ............................. CGCATCGCGTACCCGCCGCGGCCGGTGCCGGA 1030463 29 100.0 32 ............................. ATATAGTCGGCCTTCGCCCAATCATCGGACAA 1030524 29 100.0 32 ............................. TCATCATCGACCATCTGCTGCTGATGACACAG 1030585 29 100.0 32 ............................. GACATCGACGCGCTGATGGACGTGATCAACGC 1030646 29 100.0 32 ............................. ATTCATTTCAAGACCGGCTATTCGATTCGACT 1030707 29 100.0 32 ............................. GTCTGTGGCGGGAAATTGGTGTCTGCCATGGC 1030768 29 100.0 32 ............................. TGCCTTACGCAGGTTGGAGCGGCTGATCGAGA 1030829 29 100.0 32 ............................. CATGAGCACACCCACATTGACCGTCATCGGAC 1030890 29 96.6 35 ...................A......... AAGAGCGTCGACCTCGCCGTGCTCGGCGGCAAGTT 1030954 29 96.6 32 ............................A GTGTCGTGTCAGCCGCCACGGTGAGTGATTGC 1031015 29 96.6 32 ............................C TCATGATCTCGTCGACGAGCTTGCCTCCGTCG 1031076 29 100.0 32 ............................. TTCGGCGTGGGGACTGAAATTCCATCTATTCG 1031137 29 100.0 32 ............................. CCGCGAGGTGATGGCGGTCAGGTCGACGCTTG 1031198 29 100.0 32 ............................. ACCATCTACCACCCGCTGACCTTCGACCACTA 1031259 29 100.0 32 ............................. CCTGTGACACCAGCTGTTCGGTGTACCCGTGA 1031320 29 100.0 32 ............................. CGCTCGCGTCGGTGTTTAATCTTGACCGTGCG 1031381 29 100.0 32 ............................. CGCTCGCGTCGGTGTTTAATCTTGACCGTGCG 1031442 29 100.0 32 ............................. AACAAGGAGATCATCATGGCCGCGACCAACCG 1031503 29 100.0 32 ............................. CCGAGGCACAGTTCGGTGCCGGGCTCAGGCAT 1031564 29 100.0 32 ............................. ATAAGAAGTATGACCCGCTCGTCTCCGTGGAC 1031625 29 100.0 32 ............................. ACATTCATCGCCGGCACGATTCCGCTGCCCGG 1031686 29 100.0 32 ............................. ACCGCAGTACAACCTCCGCTCGGCATCCAGCG 1031747 29 100.0 32 ............................. ATGTCGCCATTGTTGACGGAGGAAGACAGGTA 1031808 29 100.0 32 ............................. ACCAAACCGGAACCGCCGGTGAGGTGGCTCGC 1031869 29 100.0 32 ............................. ACCAAACCGGAACCGCCGGTGAGGTGGCTCGC 1031930 29 100.0 32 ............................. GTCGCCACCACGCGGTTCGGTCGGTTCATCTC 1031991 29 100.0 32 ............................. GCAAGCGACAGGACGCCAATATGCTCGGATAC 1032052 29 100.0 32 ............................. TCAGTGGTGGTCAGGATGGCTTGCACGCCCTT 1032113 29 100.0 32 ............................. CGGGTATGGACTCACAGCAACCAACACGGTCA 1032174 29 100.0 32 ............................. GTCGGCATGGCCGTCGGCGCCATGAGCACCGC 1032235 29 100.0 32 ............................. AGCTGCGAGTCCGGCATTTCCCCGAGCATGGC 1032296 29 96.6 32 ............................C GCCCACCTCACACTCGGCGAGCGTGCCGAGGA 1032357 29 100.0 32 ............................. CTCACCGATGTCAGCGGAGAGCCTTTCGTCGA 1032418 29 100.0 32 ............................. ACGAAAACAACCACCTCGCAATAACATACCCA 1032479 29 100.0 32 ............................. GGCGACTTGCCCAGCTTCTGGCCGCCCACAAT 1032540 29 100.0 32 ............................. TTTGCGAGCTCGGAATCCAATGTAGCCCATGA 1032601 29 100.0 32 ............................. CTCGCCACCAAACCCCCGGTGATATCGTCGCT 1032662 29 100.0 42 ............................. GTCGCATCGAAGACCACTGACGGCACATGGGCCGAGACGGGC 1032733 29 100.0 32 ............................. CGGTCCACGTCCGCGTCGCCGCCCAGGATCGC 1032794 29 100.0 32 ............................. CAGAACGAACACGTCCTGTACACCAGAGACGA 1032855 29 100.0 32 ............................. AACGGGAAGTACGTGGATTTCGTCAAGATCGC 1032916 29 100.0 32 ............................. GGAGAGCATTCATGGCTGACGCATATGGGCCG 1032977 29 100.0 32 ............................. AAGAAGGACGCAACAAAGGCTGCTTGACGGCC 1033038 29 100.0 32 ............................. GCACCTGGCACTTCAAACGATATCTGGGAGTC 1033099 29 100.0 32 ............................. GCTTGGAAACAGGCCGGTCTACAGGTATGCGG 1033160 29 100.0 32 ............................. TCTGTGTCATACTTGAGTCATCAAGCAAACAA 1033221 29 100.0 32 ............................. CCCCGAGCGCCAGAATGAGACGATGCCCCGCT 1033282 29 100.0 32 ............................. TCCCAAGCGTCGTCGCTTGTGATCGGCCTGCC 1033343 29 100.0 32 ............................. GGACTCGTCCTGTTCGCCCACGTCACATGCGC 1033404 29 100.0 32 ............................. AGCCAAGACGGCGATACCGGGGACCGTGGCCA 1033465 29 100.0 32 ............................. GAGCGAGCCATGAGCGCGTCGAACCAGACACC 1033526 29 100.0 32 ............................. CATTCTTGCCTGCTGCGATGCGCCGCCTATGC 1033587 29 100.0 32 ............................. CACTGCGCAGCCAGCAGATAGGTGTCATTGGC 1033648 29 100.0 32 ............................. CGGGAGACCGCCAGCATTTCGATGAGCTTCAG 1033709 29 100.0 32 ............................. AATGATTGGCATTCCGACATCGCCCGACTGAA 1033770 29 100.0 32 ............................. CTGGGTAGGCTATGGCTGGTGACACCTGATGG 1033831 29 100.0 32 ............................. TTGCGCCACATACGAGTCGGAATACAGGTCTT 1033892 29 100.0 32 ............................. ATGCCGACGCCAGTCCATTTGCCCTCATAGGA 1033953 29 96.6 32 ............................C CGACAACTCACCAAACACTGCAACAGCCACAT 1034014 29 100.0 32 ............................. TGGGCGTCAGATAGTCCGTCAGACCTGCTCCT 1034075 29 100.0 31 ............................. GTGTGTGATGGCGACGAACATCAGCCAGAAG 1034135 29 100.0 32 ............................. CACACGCTGACGATGGCGCAAGCGATGTTGAT 1034196 29 100.0 32 ............................. GCACGTGAAGCCCGCGAGAAAGCGGCAGTCAA 1034257 29 100.0 33 ............................. GGAAGTGAACAATGCCGGACAAGATTCAGCAAT 1034319 29 100.0 32 ............................. ACGTGGAGCGTGGACAGGGACGGCAGGGCGAA 1034380 29 100.0 32 ............................. GAACTGTGGGTGAACCGCACGCGTTCCACGCA 1034441 29 100.0 32 ............................. GCAATGAACTTTCGAACTCGTCGAACAGGATG 1034502 29 100.0 32 ............................. GCGACCAGCCAACCGCGCGCATCGCATACGCG 1034563 29 100.0 32 ............................. AGAGATCGTAAGGCTCCAGCAACGTGTGCGTG 1034624 29 100.0 32 ............................. GATCGCGGAAAGCGCGCGGGGCATGCTCGGGT 1034685 29 100.0 32 ............................. CATTGCAAAGAATGTTGGGCCATAAGAGCGCG 1034746 29 100.0 32 ............................. GTCGCGGATCATGTGTGCCCGGATTGCATGCA 1034807 29 100.0 32 ............................. AACCATACGAGCGCGCCAACGACCGCTGCGAT 1034868 29 100.0 32 ............................. TATCAAAAACCGTTGGAATCAAGCCGTTCTAT 1034929 29 100.0 33 ............................. TAATCGGAGGGTGCAATCGCACACTCAAACACG 1034991 29 89.7 118 ..........T.....A......A..... CAGATTCGTCTGATCCGCGCCCGATGAAAGAAAACCGAGGCCTTGGGAAGTCACCAACAGGTGTCTTCGCAAGGCCTCATCTCATAACACATTCTATCACACCTAATCACGGTGATTG 1035138 28 82.8 0 .......T........-T....C...T.. | ========== ====== ====== ====== ============================= ====================================================================================================================== ================== 79 29 99.4 33 GTTTGCCCCGCACAAGCGGGGATGATCCG # Left flank : TTCTGATCGCGGGATTCGGGAACTACATTTGTGAGGCACCATGATAGTGATTGTGCTGACTTCCGCACCTCCGAAATTACGTGGACATCTCACTAGATGGCTGCTGGAAATCTCTGCGGGGGTGTATGTGGGCAAGGTCTCCGCTAGGGTGCGAGAACTCTTGTGGGTGCAGGTCCTTGAGAATCTGGAGGAAGGGAAAGCCGTGATGGTATATTCCTCGAATACTGAGCAGGGGCTTGAATTCAAGACTTATGGGCAGACATGGCAACCGATAGATTATGATGGATTGGAGCTTATCCTGCGGCCGGCCAAGCAATCTTCGGAGAATGATTCCGCCAGAAGACCTTCGCGCGGACGGCGCACGGGATGGAGCAATGCGTCGCGGTATCGACGATTCGGTCGATGATGGTGCGTCGAATAGCGACGACGGAAAGTGAGCGGAGTGTGCAAATCCAATCTTTTGACATAGTCGAGAGAGTGTTTTGCCAGTAAAGTCGGAC # Right flank : GGAGTGGTTCCGGCTAGCCTTAGATGCCGGAACCACTTCGTCCAATCCTACCCCCCATCACCCATTGGAGCTGAATATTATGAACAACAATGCAAGGATTTCGACCGCCATAGGAGTCGTCTCACTGACGTTCGGCATCACAGCACTATGTGGAGCGCTGAACGGAAATGCACTAATATCCGGGGGATTCGCAAGCGCCGCCGTCATCGCTGGTCTCGCTGCCGGCATCTGCGCATGGAGAGGTCGTGGCGACAACTGAACGGTATCTGCTGGTGGCCGAGGTGGTCGGTTTGCTCCGTATGACTGGGGAGAACCCGAAGCATCCTATTGGATGGCTTCTCCGCAGCGTTCTGGTGTTGTGTGATTCATTACCGGCGAGCAGAATATGGGGGCGGTACACTTTCTTGAAGATGCACCTGCTTTATGCTTTATATTGTTAGATATCCCTAACATTCCTTATCCGTTTTGAGCGGATACTCAATTTGAAAGCACGGTTTTCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACAAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //