Array 1 109906-115756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054020.1 Thiomicrorhabdus xiamenensis strain G2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109906 28 100.0 32 ............................ TTGCTATCGGCTTCAACATAACCGGCGAAATC 109966 28 100.0 32 ............................ ATTCAAAGCGGCACCTATATCCAGGCGCAATG 110026 28 100.0 32 ............................ AGCTCCATAATCGCGCCTTGCAACATTTCCAC 110086 28 100.0 32 ............................ AAGCAAAGCCGCATCGCTAAACATAAGCGGCA 110146 28 100.0 32 ............................ TGAAACGTCGTCACCTGTCGAAATTGTTTCCT 110206 28 100.0 32 ............................ AAGCGGATTGATGGGCCAGTTACCGTTTGCCC 110266 28 100.0 32 ............................ GTTTAAAGTTCGTAGCGCGGCCATTCGCAATG 110326 28 100.0 32 ............................ AGCAATGGTTATGAACGCCTTGGCGAAATTAG 110386 28 100.0 32 ............................ AAACGGAAACCCTCGTTACGTGGTGGCTTATC 110446 28 100.0 32 ............................ TGATCTGTGGCGACCAGACATTTCCCTATGCT 110506 28 100.0 32 ............................ TCTACCGGACTGAATCAAGCCAGTTTTTCAGC 110566 28 100.0 33 ............................ TAGCTTTTTAGCCGCCATAATGCGGCAATGCCC 110627 28 100.0 32 ............................ TCTCGGCTCTCTCTGAAAGCTTTTTTCATATC 110687 28 100.0 32 ............................ TAAACTTATCTTCCATCGCTTCACCTGACACG 110747 28 100.0 32 ............................ TTGGATCTGGATTCGGCCATTCAGTTAAAGAG 110807 28 100.0 32 ............................ AAAGAGCAATCCATACGCATCAGGCTTGGCCC 110867 28 100.0 32 ............................ ACATTATTTGCTTGTCCGCCGCCACCGCCAAG 110927 28 100.0 31 ............................ AAAAAAATGCCTGCGATTGTTGATAAAGAAA 110986 28 100.0 32 ............................ GAACTGAAGCGCAAGGAGTCGCGCGCGCATTT 111046 28 100.0 32 ............................ TGAACTCATTGCAACTTGATATAGGCGCTTGC 111106 28 100.0 32 ............................ AGCATTACATCTTTTTCGATGTAGTCGATGAT 111166 28 100.0 32 ............................ AGCGCAAAGGTGATCTTGGTATTGCGGATCTC 111226 28 100.0 32 ............................ TGTTGCGTAGCTTGTTGCATAGGCAACGCATG 111286 28 100.0 33 ............................ GTTAAATACCCGCTAAGTTTTTGCTGATCGGGT 111347 28 100.0 32 ............................ GTACACGTTGACGGATGAAAAATCCGCTATGC 111407 28 100.0 32 ............................ ATGTCCTCTTCGTCGTTATCCAGCAGCGCGTG 111467 28 100.0 32 ............................ TCATGCTGGATCTTCTTAGCCCATGCGTATGA 111527 28 100.0 32 ............................ TCCAAATAACGACTTTTGTTCAATTGATCCCC 111587 28 100.0 32 ............................ TTTGCTTGCCTGCTGTTGTCCGTAAGCAGGAT 111647 28 100.0 32 ............................ AAGTAAGCACGGTTCTCGGCAAATAAATAAAA 111707 28 100.0 32 ............................ TATTAGCGGAAGCTCTTTTTGCAGGTGTGTTT 111767 28 100.0 32 ............................ GTTCAGTATTTGCGCCAGGTATGCGGCATTCT 111827 28 100.0 32 ............................ AACTAAATAACCGCCGGCGGCGCTTGGCTTAT 111887 28 100.0 32 ............................ CGAAAGCGAAGCCAACAGGGATCTCTGATCGA 111947 28 100.0 32 ............................ AAAAAAATCACCCTCAAACGAAAGGCCATGAA 112007 28 100.0 32 ............................ AGCCTGCAAGACAAAGGATTAATCGAATCAAC 112067 28 100.0 33 ............................ GAAACGGCCACCGGTACCGGTAACAAAGAAACC 112128 28 100.0 32 ............................ TGTCCTTCGCCGATCCAGTGATACACCGATGT 112188 28 100.0 32 ............................ AACAGGTGTACGGCGGGGTGGTCGGTACCGTT 112248 28 100.0 32 ............................ AAGTCCATACCATTAAGCAGGCCAAGCAGCTT 112308 28 100.0 32 ............................ AAATACCACCAGGCTGGCAAACCGGCGTTCGA 112368 28 100.0 32 ............................ AAAACAATATCTACCTCGCTAACCGAAACGGT 112428 28 100.0 32 ............................ AACCTCGGCCTAAGTTCATGGCTTCCTCAATT 112488 28 100.0 32 ............................ GGAACCCTCGCCCCCAGGTGTGTTAAGACGGA 112548 28 100.0 32 ............................ GATGGGGTGATTATCGCAGGGCATGGCCGCCT 112608 28 100.0 32 ............................ ACAAAACGCCGGAACTCTACAACGTCATGATC 112668 28 100.0 32 ............................ TCGCGCATTTTCGACAGCCAATCATTACCAAC 112728 28 100.0 32 ............................ CAAGACGAACACAAGCCCCAAGAACCCTGTCT 112788 28 100.0 32 ............................ GTAGGAACCCAGGTCTTTTTCGGCCTGTATCC 112848 28 100.0 32 ............................ CGATATATCTTCTAATGATGATAAATCGCTCA 112908 28 100.0 32 ............................ CACCATATAAAAGCGGTCTGGTAACATATCTA 112968 28 100.0 32 ............................ TGCAGCGAATTCGCTTCGACATTGATAAATGA 113028 28 100.0 32 ............................ ATTCGTCGATGACGGTGGATAGCCAGACGGAT 113088 28 100.0 32 ............................ CTCAATATAGACCTTTGACCCCTTGTTAAGAT 113148 28 100.0 32 ............................ AACCTTTAATTTCCCGTCAACGTATTTTTTAG 113208 28 100.0 32 ............................ CGCCAGAGAACCCCGACCTGGTTGATTTTTTG 113268 28 100.0 32 ............................ AATGCTAGATGCTCTGATCACAAGCCCGAATA 113328 28 100.0 32 ............................ AGCAGACGGAATCGCTCGTTTAACACGAGTAC 113388 28 100.0 32 ............................ ATGAACAGCGCTTGATGGTTGATCTATCGCCT 113448 28 100.0 32 ............................ ATGCAACCGGCATATTCGCACGACACCAGCCC 113508 28 100.0 32 ............................ ACGCCGATGTTGGATGCGCTAATCGCAAGCCC 113568 28 100.0 32 ............................ AGACGAAAGTTTTCCATGTGGATCATGTAAGA 113628 28 100.0 32 ............................ TTTGAGAAAATCGGTGTGACCAAAGAAATGCT 113688 28 100.0 32 ............................ TTTGAGAAAATCGGTGTGACCAAAGAAATGCT 113748 28 100.0 32 ............................ CTTTAAATGCGGAATAACTTCGCGCACTTTGT 113808 28 100.0 32 ............................ GGCGCTTCTTATACGCTCGATTGGGTAGTTGA 113868 28 100.0 32 ............................ ATTTAGAGCAATGGTTACGACCACCCCAAACA 113928 28 100.0 32 ............................ AGGGAACGGTTGTTGCGCTTGTGTACGAGATA 113988 28 100.0 32 ............................ TGCAACGGCAGTCAATGCCCCGGAATTGTCCA 114048 28 100.0 32 ............................ GATCAGGTTATTCACCATTACACGCCTTTGCG 114108 28 100.0 32 ............................ AATTTTCCAAACGGTGCGAACTACTACTCGCC 114168 28 100.0 32 ............................ TCAAATCATCATGTACAAACCGTTTTTGAGCA 114228 28 100.0 32 ............................ TCTCGTTTTAATCAGCGCATTAAGCTGATGCA 114288 28 100.0 32 ............................ GGAAGCGTGGCGGCCAAACCTTTTTTGTTATT 114348 28 100.0 32 ............................ ATTGTCAGTGGTAATCACTTCTGATTTCTTAA 114408 28 100.0 32 ............................ TTTTCTCACAATGATTCCATGCACCGGAGTCC 114468 28 100.0 32 ............................ AGTATGCCACCTATTGAAATAGCAGACGGTCA 114528 28 100.0 32 ............................ ATTTTCTTAATCCACGCCGGACGACTTGAAGC 114588 28 100.0 32 ............................ AGATTTAAGCGCGAGAGTTGAAGTTGCTTTAA 114648 28 100.0 32 ............................ TTTGAAAGCCGTGCCGTACTTCGCTCAATAAC 114708 28 100.0 32 ............................ TCTGGTGCTTGCTTCCCCCAGTAGGTCGTTAG 114768 28 100.0 32 ............................ TTATAACCAGATGACTGCTTCTCAAGCATTAT 114828 28 100.0 32 ............................ AAAATAAGGCGGTAGGGCTGCTTATTTATTTT 114888 28 100.0 32 ............................ TTGCGGAAAAGGAACTTCCAAGCTAGGCCAAC 114948 28 100.0 32 ............................ GAGATCAATACGGGCAACGCCAATAAATATTT 115008 28 100.0 32 ............................ GCGTTAGGACGGACTGTTAAAGATGTATTAAG 115068 28 100.0 32 ............................ ATGATTTACGTCAGCGAAAACGTTGTGAAACC 115128 28 100.0 32 ............................ AAAGCAGGTGCATGTGTCCGGGTTTACCCCTT 115188 28 100.0 32 ............................ GAAAACCTGAAAGCCAATACGACCGAGGCGAC 115248 28 100.0 32 ............................ GGAATGTCTTTCGCCCCGACGGCAAAAAGTGC 115308 28 100.0 32 ............................ TTGCGTTGATGCGTAAGATTTTGCCGCATCAA 115368 28 100.0 33 ............................ TAAGTCAAACACTAAATACAACATTTAGTTAAT 115429 28 100.0 32 ............................ TATTATGGATAATCTTTTTCTCGATACTTTTT 115489 28 100.0 32 ............................ ATACGGAAATCAGCCAACTGGAACCACGGCAA 115549 28 96.4 31 C........................... AAAAAACCGACTGGGTGCAGATCGGGGTTTT 115608 28 100.0 33 ............................ ATCGCCTGGCCAAACTGCAACATGGCATTATCC 115669 28 96.4 32 .................T.......... TCCGGCTGCTGCGCCACCGGTGGCGGAATAAT 115729 28 89.3 0 ....................A.T..G.. | ========== ====== ====== ====== ============================ ================================= ================== 98 28 99.8 32 GCTCGCTGCCGCCAAGGCAGCTAAGAAA # Left flank : GTGAGCAGGCTCTGGAAGAATTTGCACTTAAAAAGACATTGCGAAAGTTCGAAGACTACGTTCATATTACGGGGATTCGTCCTGTTCCGGCTTCGATAGAAGCCAAAACGCTTTTCAAGCGAGTACAGCCGAAGCAAAACAATCTTAGTTATGCCAGACGTTACGCTAAATATCGTCAGATGGATATTGAAGAAGCTTTTGCGCAGCTAAATCAGAAACCCTCTAAAAGCTTGCCATTTATTAATTTAAAGAGTCTCAGTACTAAGCAAAATTTGCGTTTGATTCTTCGGCAAGAAAAAGTGCCTTTAGACGAAGACAGGGAATTGATCTTTAATGCTTATGGCTTAAATAACCCTGTACCGGATTTTTAACCCAAGTTTTTAACCGCTCTTTAAAAATTTGGAAAATCAATGGTTTACGATTTTGGCAGAATTTTTTGGCAAAACCAGAAAAAAGTCGTAAGTCACTATTTTTATTCATTTTCTTTAAAATAATGAATA # Right flank : AGTGAAGTAGAAATCCCAGAGTTTTACTTTAGGGGGTAATATCATGTTTTAGTCTATTTTCCTGCAGCCGTTTGGATCAGGGTTTTCATGACGTTATTCAGTTTGTCGAGATTCGGGCAGTCGCTGATTTGATGTCTTTCGGCGAGATAGGTCAGGTCGTTGAAGCTCAACCAGACAACTCCGTTTTCGTCTTCCCAAGCGAGGGCTTTCAAAGGGAGGTCCAAGCCGATTACTTGCGTGCATTCCATTAACGGGGTTCCGCCTTGCGGGCTGCCGAAAATAAGCAGTTCAGTGGGACGCAATTCGGAACCAATTTTTTGGGCTCCGGCCGAATGGTTGATGCGGGCAAAGATATTCATCTTTTTTTTGTGAACTTCTCTTTCCAGATTATCTATGGATTCGGTGACTGAAAAAGCACTGCGGAGAGTGATTACGCCGTTTGCCTGTTGTGTCTCGGTTTTGGTTGTCATGTTTTTTCCTGATCGTTGATGGTGCGGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCGCTGCCGCCAAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //