Array 1 131857-131540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATS01000020.1 Streptococcus sp. CM6 ctg7180000005576, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================================== ================== 131856 35 100.0 29 ................................... AAAACTATATTTAACTATGAACCCGTGGG 131792 35 100.0 53 ................................... TCATGTTCATCAATATCTCAATGCTCTTGCTCTTCCTCTTTGCGACGGTCACT 131704 35 100.0 30 ................................... ATAATCTCTTCCAGCTTTCGCTTCGAAAGT 131639 35 100.0 30 ................................... TAGGAAAATATAGACAAATTATAGATCTTT 131574 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================================== ================== 5 35 100.0 36 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : GCAATCTCAAAAGAGAAAAAAAATGAAATCATCGCACAATATGCACGTCACGAAGGTGATACAGGTTCAGTAGAGGTTCAAGTTGCTGTCCTTACTTGGGAAATCAACCACCTTAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTACTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTAATCAACTCTCTAGGACTTCGTCGCTAATCTGCTTTATTTTCCACTTACATTGCGTTGTCACCTTACCTCGATATACTCAAGTATAATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGAATGATCTCCCTTCGGGGAGATTTTTTGTTTCACTAAAATTTTCGTACAATCTTTGGCTTGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGAATAAAGCTCTCTGATTTCAGAGGGCTTTTTTATTGAG # Right flank : CTCAAATAGTATCAGCTAATTACACCATAAAGGTGCGCATCTACTCGGCTTGAAAAGTCGAGTAGCTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATAGAAGTAGTCACCGAATTTCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTGACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAAT # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.16, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 192-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATS01000001.1 Streptococcus sp. CM6 ctg7180000005573, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 191 36 100.0 30 .................................... CAGAGGTCGGGGAGTTGGAGGGGACACCCT 125 36 100.0 29 .................................... ATAAGATGAATACAAAAATGAATTTAGAA 60 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTTACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAGTATGAAATGAAAACAAAATTTCGTAGTGAATCAGTCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTAGAATTTAAGAATTTATAATATTTTTGAGGGGAGCAAAAATCAAAATTGACGAATTTGAG # Right flank : CCTACTAAGTACATTGCTAAAATGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 205228-204871 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATS01000006.1 Streptococcus sp. CM6 ctg7180000005584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 205227 36 100.0 22 .................................... GCCAATGATATTGATGTCGGAG Deletion [205170] 205169 36 100.0 30 .................................... AACTCGACAAGTGTTGTTCTGGCCGCTTCT 205103 36 100.0 29 .................................... GTATTCGCACTCGCTCGTTTACTGGGAGA 205038 36 100.0 30 .................................... CTTGATAAGCAACCGTATATCTGGCAACTT 204972 36 100.0 30 .................................... ATCTTGGACATCGCAAGTTCCTGCGCTTAT 204906 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 28 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : CTTGATAAGCACATATCCGTTA # Right flank : ACCTCATGCTTGAAGATGGCCGATTGGCTGAAAAAGAAAGTTTCAACATCGAGCCTGACGGATTGATCACTACAAAATAATTTTTTAAAAATAGAAAGGAAATTTTCTAAAATATTGTTCGAATTGTAACCGCAGGCTCAGGCTTGCGGGCTTTTTTGTTTGCAATAATAAAAGCAGTGACGGAAATCACTGCTTATCAGCTGTAGCAAATTCATAAAGTTTTTCTGCTGTGAGAAGTGCCATTTTGTCCATGCTTGTTTTTCCTTTTCTGAGGTCAGAAACGGTAGTCCATGGCACACCGGCACCTTGTGAAATAGCAGATGTAGAAATAGAACTATTAAGTAATTCTTGAATAATTTTTCTCATATTTTTCTTTACCTCAATTTTTATCTTAATCATATTATATAACGGAGAACCGAGATGTCAAGTGTTTTGATAAATTATTTCTAATTCTAAGATGAAATAGATAAAACCCGCTCAGTTGAGCGGGTTTCGTCTAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //