Array 1 1160694-1159403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040500.1 Lactobacillus paragasseri JV-V03 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1160693 36 100.0 30 .................................... TAATGCTTCGAAATGTTACTATTCAGGTAA 1160627 36 100.0 30 .................................... TAATTGATGAAAGGTACCATACAAACCAAT 1160561 36 100.0 30 .................................... ATAGAAAATTAAAATACGAGAAGAATCACG 1160495 36 100.0 30 .................................... CCATAAACGGATTAGCCATAAAGACTGCTT 1160429 36 100.0 30 .................................... TTATTAAGCATATAACTAATCGGCCGTTTG 1160363 36 100.0 30 .................................... CTACTCTTGCAAAGCATGATGCAGTCTTAC 1160297 36 100.0 30 .................................... ATTGTTCTGGATTGGTTAAGTATGCCTTAG 1160231 36 100.0 30 .................................... GTGGCACCTTGCCAAATTAACCCACCCATA 1160165 36 100.0 30 .................................... GAAAATTGATACTGAGGCTACCCGTGCTAA 1160099 36 100.0 30 .................................... GATCTTTTTTGCTCTGTACTTGATGCGCTC 1160033 36 100.0 30 .................................... CAAGAGTAGATAAGCTAGATGGAGGCGCTG 1159967 36 100.0 30 .................................... CAAGAGTAGATAAGCTAGATGGAGGCGCTG 1159901 36 100.0 30 .................................... CTTACAACATTAAGACAAGCTTACATGGCG 1159835 36 100.0 30 .................................... GGAGAATTAGCAATGGCGGGGTATCGTCCT 1159769 36 100.0 30 .................................... ACATATTTAAAACCTTGTGTATTAACATCT 1159703 36 100.0 30 .................................... AAAGAAGCTGGATTAATCAAATGAGGCTAA 1159637 36 100.0 30 .................................... AAAAGCCTAAAGTGGAAAAGCCAATACAGG 1159571 36 100.0 30 .................................... AATTTTAGAAATAAGCCAGTTCGAAGGGCT 1159505 36 100.0 30 .................................... GAAGAAAAGAAAAAATCAGTTGCTGAATCT 1159439 35 94.4 0 ..........................A......-.. | TA [1159409] ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : AATCAAAATATTTTTGACAAGTATATGCCCGTAATTATAAAAGAATACATTGAAGGGCTTAATGAAGCGGATCGTAATGAAATATTAAAAATGTACCATAAACTAGAAGGGATAATTCAAGATTCGTTGCTACTTGAAGATCTACCATTAGAACTTGAATTTAATGAAGACTTGAAGAAATTTTTAAAGTTAGAAAATCTACATTTAGATACTAAGTTTTTAGAAGAACCATATGCTATAATTGAATCGATCTTAAAAATACATCAAAATTATAATCTCCATTCTATACCTGTTGCTTGTAATATAGCTCATTACTTAAATTTAGCTCAGGTAGGGATGTTAAATGATCTGTTAAAAGAAATGAAGTTGAAATTAATTTTAATAGAATTCACATCTGCGGATTTTCTGGTTTTTCCAAAAGATGTTGATTATTTCTACATTGATCAAGATCTTGTTGATTGGTACTAACTGTCCGATTAAAAACTGATTATAAAATTTCG # Right flank : GTAATTACACTACTGGTCCATTGCTTTTGCAATGGGCCTTTTTATTATCTTCCAAACCGTTTTTCACCCTACAGTGCAAAAGTCTATTTTAAATGTAAGTGCCTATTTTATACCATATAAGTGTCAAGAAAAATAATATTAATGAATAATTTAAAAACGACTAAGAATGTTTTATTAGTATGTGGTTTAAGTGCATCATCAGGTTTTATGGCTGCTAACATGAGAAAAGCATCAAAGAAAGTTGGTTTAGATTATAAAATTCAAGTTCGCAGCGAAGCAGAATTAGGTGACTATGCAGATCAAATTGCCGCCTTAATGTTGGTTTTCTTACTTAAAGACGGAGTTGGTACGATTAAATTACAAGTACTTGACAAGGTAAAGTAATTTTAATGAAACTAGATTACTATTCAATTTCCATTTGATTTTATGGATTACATGAAATTAGACAGGCAAAGAATCATTGCGGATCTTTTCCTCAGGGCGCGGTATTTATAATGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //