Array 1 172756-173450 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RHON01000003.1 Companilactobacillus mishanensis strain 256-3 contig3, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    172756	    36	 100.0	    30	....................................	GAGAAATCAGCCACTAATAATGTCACTAAA	
    172822	    36	 100.0	    30	....................................	CATGTAAACTATCGTGACGTCTAATTCTTC	
    172888	    36	 100.0	    30	....................................	AGTGTGAGCCGTTCATCGTCGCTGTGACAA	
    172954	    36	 100.0	    30	....................................	AACATTAGACGCCCCAGGTCAATACACTAA	
    173020	    36	 100.0	    30	....................................	GAACTTGTCTATGTCCCGACTCCACAAATG	
    173086	    36	 100.0	    30	....................................	TGAAGGTAATTATACTCAATCAAACGTAAA	
    173152	    36	 100.0	    30	....................................	TGCCTTCAAATTGGAATCTTGTAGTAAAGC	
    173218	    36	 100.0	    30	....................................	GGTTGAATCTTCAATAGCACAAATCTGACG	
    173284	    36	 100.0	    30	....................................	CAGGCAACATACACATGTCTAAGACAGTGG	
    173350	    36	 100.0	    30	....................................	TAAATACAATGAGTCTATTTTGACTGACAA	
    173416	    35	  80.6	     0	.......T............-..CC..C.T.....T	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.2	    30	GTTTTAGATTTAAGTCATCTCAATTACTTAAGAACC	                              	       

# Left flank :   TCTTCAAACTTACAATATAAACTCCATGCCAAACTTGAAACTTGTTTACGATCACATTGATAAAAATTCAAAAGTCGAATATAAAGACGAGTTTGAAAAAATAAACCTGAAGTTAAATGAGTTGGTTTTTGACTCTAGTTGCCCCTTTGATGGACCATTTGATTTTGATAATATGTCGACATTTGAAAGTATGTTGAAATTCAAATTATTAAAGTTTGATGTGGGTAATTGGCAAAACTACTATGATAAAATGTTATCAGTAATCAGTTTTTACAAGGACTTTACAGATAAGAAATTACTAATTTTTCATGATTTACACAAACTACTAAATCTAGAACAGGTGAATGAAATGAACAATTATCTTAAAACCACCGAATTATCTATTGTTAGTTTCGAATCATTTGATATGTCTACTAAAATTGAAGGTCTTAATTGCAAGGTTTTCTCAATTGATAGTGATCATGTCAGATTCGATTATTAGCAAAATTTAATTTAGGACG
# Right flank :  TACATTCAGCAAAAAAGGATCCGCCCCAAAACAGGCGAATCCTTTTTAAAATTCTAAACATCTAGTCAACCAATCGATCTGGCATCTTGCCTTCCAAGAAGCTCCAAGTACCATTTGATATCATCAAGACATCTTGGTCAACTCGTGACAAGCTCTTATTGATCAAGTCTTCATGGCCTGTCATCACTTTTTCTGTCCAATGTGGATCGAGTAACAATGAACGTCCAACTCCAACTAAATCGGTATTTTCCAATACTTCTTCAGCATCAGCTTTTGTTCTGACATCCCCAATTCCAATAATTGGCATACGTCCGGCAACTTGATCCTTAATATAAGCAAGAATTGGCTTGTCTTTGTAATCATCACTTACTGAAACTCGCTTATAGTCGCCCATTGAAATGTGTAGATAATCTAATGGCTTGTCTGTCAATTTATCGACTAAATACATTGTGTCCGACATGCGAATTCCAGGATTTTCATATTCCTCTGGTGACAATCGG

# Questionable array : NO	 Score: 3.17
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATTTAAGTCATCTCAATTACTTAAGAACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-1.40,-1.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.41,0.37   Confidence: LOW] 

# Array family : NA
//