Array 1 204581-206818 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235944.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig7.11, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 204581 36 100.0 41 .................................... TCCGCCGTTGGGCACTGGCGGAATGGGAGAAGACCCAGAAA 204658 36 100.0 49 .................................... CAGGGAAGTGGGGTCTCCCCATTACTAAATTTATCCAGGTAACTGGAAG 204743 36 100.0 40 .................................... CTCTGTAGCCCTGTCTCGCTAACCCCATACCCAACCTCTC 204819 36 100.0 36 .................................... TCTTAAAGAAGTCAAGAAAAACCAGGAGCTGATTAA 204891 36 100.0 39 .................................... AAACCGTGAGGGGCTTTCTCAAGCCATGGAGGTCTTGAG 204966 36 100.0 38 .................................... AACTGTTCTCAGGATTCCTCCTCGACGAGGAAAACGAG 205040 36 100.0 40 .................................... GGACCTTTACAGGCGAGAAGAAATCTCGCCTCCAAACTTT 205116 36 100.0 37 .................................... GAAGGGTACGAGTTCCGGGATCTCATCGGAACTGGGG 205189 36 100.0 36 .................................... CAGAGATGCACTTTGTGTACTCTTTCCTCAACGCTT 205261 36 100.0 38 .................................... CTGTTATCAGGATCAATACTGATAACGTTTCCCCCAAG 205335 36 100.0 40 .................................... AGGCTCACGGGTATGTGGCTTACATCGCGCCAGGTCGTAA 205411 36 100.0 41 .................................... AAATATGGGATGGCCTTGATAGCTCTAGAATGCCCCCAGAT 205488 36 100.0 43 .................................... CTCCCGTGAGTCCAATAAATCCTGGGTTGCCCAGGGTGACGGT 205567 36 100.0 41 .................................... GAACCCCTAGCTGCATACCCATCAGTAGGGGTGGCTCGGAT 205644 36 100.0 38 .................................... TGCACTTGGCACTATCTTCAGGAAGCTGAATGCGAGAA 205718 36 100.0 43 .................................... TAGACGAACTAGTGGATGCCGAGATCCTCTCCGTTAAGAGTCC 205797 36 100.0 41 .................................... ACCCTCAATGAGTATGGGCTACCAGAAGCCCGTCTCAACTT 205874 36 100.0 39 .................................... CTTATCATCTCCTTCCTGGTTAGAGGTCTCTGACGGTAG 205949 36 100.0 41 .................................... AAGGCTATCATTCATCTTGATGCCTCGCCAGCTCCCAAACC 206026 36 100.0 40 .................................... CCGTAAACCAGTTCGGCTTGGTTGAGGCCCATCTCAACTT 206102 36 100.0 40 .................................... TGCACTTGGCACTTCCTAAAGACTTCTGAAGGTGAGAACT 206178 36 100.0 39 .................................... TTAGGTACGTTTCAAAATGAATCAGAAGGAGGAGGGGAA 206253 36 100.0 43 .................................... GTCGGTACGCCTCACACGTGGACATCCTGGAGCGCCACAGCAG 206332 36 100.0 37 .................................... ACCGATCCCTGGGCTAAGAAGCTCCAGGGCAAAACTT 206405 36 100.0 41 .................................... AATCATTTAGAGTATTTAGAGTTTATTCAGCGAAAATAGGG 206482 36 100.0 43 .................................... ATAAACCTTCGCGCAGAGCAAGGATGCAAAAACTTGGTGATTG 206561 36 100.0 38 .................................... TTAAATCAGATTGCATGTCGACATATATAGTATATGCG 206635 36 100.0 37 .................................... GGGCAAGTAGCTAAACTGCCTATGTTTGCAAGAAACA 206708 36 100.0 39 .................................... TAGACTTGACCAAAACTCACTATAATCCTAGTGAGGAGA 206783 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 30 36 100.0 40 GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Left flank : GGAACCGGACCCGTTAATTGGAAAGTAGTTAAGCATATATACTTGGCAGAAATTGTCATACCCATCACCAAACCCTTGTGATCCTCAAGGAGGGCAAATTTCAGTCGATCGTTGCCCCAAAAACCATGGTGACAAAACCATGACAATGAAACCATAGCCCTAAAACTATGGCGACCGCCAGTCCAGATCCTGATTATGATGCCCTGGTCTTCAGCCATCAGGGGTTTGTGGAGACGGCGATCGTGGGCCTGGAGCAGGACAGCCCCGCTGCCAATGATGCCCTAATCTTTGAGATGACCACTGGTACAGTCCAGCGTTGCGTAAAGCTCATGAATCTGCTGGGATCGATCCGGGTTGATGGGGACTGCGATTAAGTCCCGCACTGTGAGACCAGCGGCGATCGTTGGTCAGATTTAATACATAGGTACTATCCCAGGGCCAAAAAAATAGCCCCAAGCTGACCTGGGACTGGGGGGGACAGGGGCGATCGCGGGCTTCAT # Right flank : TACCTGCCATCTTAAACCCAGACAGGGCGCGGTGTCTAGGGGCCGTTTGCGAACCCTCCGGTAAAGTGGGACAATACACAACATTTCCGAGACTCCAAAAACGCTGAAACCCTTACCCAGTAAGGCTGCGAACCCTCCGACGCAATTACGTTGTTTGAGGCCGATCGCCCGACCCCTCGCAACTGTCACAAGGGCCGGGGTCTGGGGATGGCAATATTCCCAGTAGGGTGACCTTTTCATCTGGGGCATTGGGCCGCGATCGGGTGCGGGGGAGTGAGTCATGGGGGAATGTTCTAGGGGAAGGGTGGGGGGCGATCGCTGCAAGACTGCTGTGGCTCACGGTAGGGAAAAACATTATGCCCCGGATCTGGTCTTAAGAGCTAGGGAACAGGCTCACTCTCTAACGGTTTAGTTGAGCGGTAACAGATAAACTAGAGATCAACGCAAAATATCTATCGACTATCCGCTCCAACGCAGTGTTAGATAGATTGTCCTGAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 184947-190598 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235933.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig5.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 184947 36 100.0 38 .................................... CCGGTCAGGGTAGAGCCTGGTACGCCTACAACGTCAGT 185021 36 100.0 39 .................................... AGGTTATAAAGTCCTTACAGGTTACTAGCTTCAGAGTCT 185096 36 100.0 35 .................................... AACAAAACGTTTTTCTATCAACTTCGAGACGCGAA 185167 36 100.0 38 .................................... CTAGATCCAGATGAAGTCACTCCTGACTTCGTTTGGGG 185241 36 100.0 41 .................................... CATTGGCCGCTATTTGAACGTTACAGCGGCGATCCTTAACG 185318 36 100.0 35 .................................... AGGTTCAAGTTGTTTCCAAGATGTCTGACCTCTGG 185389 36 100.0 40 .................................... CTTTAAAGTCGAGTTAGTATGCGATCGCCCGTGCCAGGGT 185465 36 100.0 38 .................................... TTTACAGCAACTTTCAGAACTAGAGACCGCTGCACTCG 185539 36 100.0 37 .................................... CTCTTGGCAAGGATATCTACTGGGCATTGAGTGTTTA 185612 36 100.0 45 .................................... TGCAGATGCCTACAGCAGAACGTGAGCAATACTACAGCCAGCTAG 185693 36 100.0 40 .................................... ACTTTGTGCCCATCGTTTCTGTAGAGCATACTGACATCAA 185769 36 100.0 37 .................................... CCCAAATCAAAGAGTTAGTCCTGCCCCATGGTCGGGA 185842 36 100.0 42 .................................... GCCACAGCCCACGACTTGGATGTGCGCCTGGTGGGAGACCAC 185920 36 100.0 35 .................................... AAAAAGCAAGCCGCTGAAGCCCGCGCCTATTCCAA 185991 36 100.0 36 .................................... CTAGGACTATTTAACGTCAACCAAGGAATAGCATGA 186063 36 100.0 36 .................................... TGGATGTCACTAGCGGCTTCTGGGAGGGGCACCAAG 186135 36 100.0 36 .................................... GCTCCAACTTAGTTGATAGGTTAGCTACATCAGTAT 186207 36 100.0 37 .................................... GCAAGACTATCAAAACGTTGGTATCTAAGTATTTTGA 186280 36 100.0 41 .................................... CGTCCTGTGTGGTTGTCTCCTACTACCCCCACCCTGAAATT 186357 36 100.0 40 .................................... TAGACCCTAATGGACGGGTTGCCTTATGCCTGGATAGCTT 186433 36 100.0 39 .................................... CCTTGACCACGGCATCCCCGTTACGGGGTTGACGAAGAA 186508 36 100.0 41 .................................... GTATTACCGCCCATGTGCATACCCCAGAAGATCCCAAGTAC 186585 36 100.0 36 .................................... AAGGAAGAAGACTACTATGAAACGCTCTTAGCCTCC 186657 36 100.0 38 .................................... GAGGACGGCAAGCGAGCTTCCCTGGCCGAGGAGATCGA 186731 36 100.0 39 .................................... ACAACGGCCACTGGATGTTAATTGCCCGCCCCGAATATG 186806 36 100.0 46 .................................... CCGAAACGGCTGCTTGGTAACCGCTGCCGTAGCAGGCAGTGCCACT 186888 36 100.0 39 .................................... TAATTGCTGAAATCATTTCTTCCTGCTCTGTCACCCTCT 186963 36 100.0 39 .................................... GGGATGCCGGGTGACCTTCGCTGACCGACGCGCCTTTGT 187038 36 100.0 36 .................................... AAAATAAGAAGAAACGGGCAAAATACAACGTCAAAA 187110 36 100.0 40 .................................... TTTCAAATAAAAATTGGGTGCTTACCTTCACGGAGAAGGG 187186 36 100.0 38 .................................... TTAGTATCTTTTCCCTTTAAGAGAGACAAAGATTAAAA 187260 36 100.0 36 .................................... TTGAAGAAATTCGCCACCGGGCTCTTGCTGTTCGTA 187332 36 100.0 35 .................................... TTAGATAATAACTTGGATACCCTAATGTCTTTGCA 187403 36 100.0 39 .................................... ATTGTGAAGCCTTCGCAAAAGAAGTGGTCGCCAACATTG 187478 36 97.2 37 ...................................A TAGGTTCGAATCCTTCAATGAGTATTGCCCTTCCTTC 187551 36 100.0 37 .................................... TAATTTGCAGTTATTTCTACGCAAATGACGAAAAAGA 187624 36 100.0 42 .................................... TTGTACTGTTCCCAAAGGGGAGTACATTCTAGAGGTCCACGG 187702 36 100.0 41 .................................... GGTATGACGCGTTTGAGGTAGGGGGCTGGGCTCCTGAAGCC 187779 36 100.0 40 .................................... TTAAAGTCACACTTCGGTGTGACCATCCTATAGAATAAAT 187855 36 100.0 40 .................................... GGAGTATCTCTCCAAGGCAGACGTGACCACTAACATTCAG 187931 36 100.0 39 .................................... CTTCAAAGCAGTTCCTCTTGAAGCAAAACCCTCACAAGG 188006 36 100.0 42 .................................... TTAAGTTCTTTCTATTTGGTCGAGCAATCGACAAAATTACAA 188084 36 100.0 39 .................................... TAGAAGTTACGACTACCAAGATTCCGAAATCTTTGGTAG 188159 36 100.0 36 .................................... TTCTTAGCTGAAGAGCTAGGAGATAACCTGTACGAC 188231 36 100.0 41 .................................... ACATTGCCCTACCAACACCATTACATTGATGTTACTGGTCT 188308 36 100.0 38 .................................... ACTTTAACGTAGCTAGTTACAACAATGTCATTCATATT 188382 36 100.0 42 .................................... TGTTTTACGTTTCAGTAGGTTCGATTCCTACCTGCGCTTTTA 188460 36 100.0 36 .................................... TTCTTTTTTGTCATTGGTGGCTGTTACAGCCACCAA 188532 36 100.0 39 .................................... TAAATCCATGGCTACTTCTACTGCGAAACACACTTATTT 188607 36 100.0 39 .................................... GACTGCTCAGGCTTTCGGGCTTGAAGCAGGCGACTTCCT 188682 36 100.0 37 .................................... TCTTTTATTATCTTATCTATTCTTCCACAGGCTTAGT 188755 36 100.0 38 .................................... AGACAGTTCAGTGGTTGCATGAAACACCCCCACCATCA 188829 36 100.0 42 .................................... AGGAATAATTTTCATTTGTTGTAAATAAAAGAGGGGCCTTCC 188907 36 100.0 37 .................................... TAAGCGCTTTCAAGCCGAGACAGTTCTTCCCGATGTT 188980 36 100.0 37 .................................... ATGTTCGTGAGATTACATCTTGCCATCAGTTCGGGAC 189053 36 100.0 49 .................................... CCCACGCATGGGCTTCCTCCATTGCGCTGTTGCGCAAAGAAGAAACAAC 189138 36 100.0 38 .................................... CATTGCAATTGCAATATTTGCGCTATTAGTTAGGGTAA 189212 36 100.0 39 .................................... AATCAATCGATTGACTGGGATGCAATCTAATACCTAATC 189287 36 100.0 39 .................................... ACAAAGGAGGGGGTAGCTGCTATCTCCATGCCGGAGTTC 189362 36 100.0 37 .................................... TGTCACTTCACCGACTCCTTTCTCTACAGCTTCTTCG 189435 36 100.0 39 .................................... TGTAGCAGTGTAGCCGTTGCTGCAATAGTATGTCTTTAA 189510 36 100.0 37 .................................... ATGTCTAGCTTAGGCATTGATACACTTAACCCGTTAA 189583 36 100.0 36 .................................... GCCAGTATACAATCTAAACCATTAGAAAGTTTACGA 189655 36 100.0 43 .................................... CTATAGTCATTGGAGAAGAAGAATTTGAGTTAACTTATAGTGG 189734 36 100.0 40 .................................... CAACAACAACCAGATCCACCCCGCCGCGATCGCACACTCA 189810 36 100.0 45 .................................... TGACCTTCTCCTGGTATAATTCTCTTCCATACTAGTGGATATCCA 189891 36 100.0 40 .................................... AGAAATTTCTGCTGTTGGCAACAGTTTGCCAAACTGAGAG 189967 36 100.0 37 .................................... TACTCACGGGCTAGCTGACTGATACGGGACTGGGAGA 190040 36 100.0 40 .................................... CGCTAGAGATAGACCTTAGAATAGAGGGACACAACAACGG 190116 36 100.0 39 .................................... CAATAAAAGCGTTAATTAAAAAAACTAAAGCTCTACCAG 190191 36 100.0 40 .................................... AAATCTTGTCTTGCATGGCAGAGGAACTTACCCCTGTGGA 190267 36 100.0 38 .................................... TACTGTTAAGAGATTTTGATAAACTAGATAATTTAGGG 190341 36 100.0 39 .................................... ACAAGATATTTATAACAGAGGACGTAGAGATCTTGATAA 190416 36 100.0 36 .................................... GTGGTGACTCTACCATCCGCGTCAAATACAATCCGG 190488 36 100.0 39 .................................... TCATGATACTGCGAAAGAGGCTGTCTGCTTAAGTCGGGA 190563 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 76 36 100.0 39 GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Left flank : GTTCTCGGTAAGACATCCGCCAACCCGTCAAGCAATCGGTATGTATCTCCTGTACTTGGTGGACACCCCCGATCGTCTCACTGCCAACAAGAACTGAAAACCGCCAGCGATCGCCAAACGTCCCCAGTCCCCCGCCCCCTGCCTCGTCCCCTTCTTCAACCCAGGACGTGAGGTTTGCCTCCTGTTGAGCGATCGCCCACGGCTCACGGGACGTTAACCACCGGGGGAATGGGTGTTGAGGTTGGCGCGGTCGGGCGGTGCCCTGGAAGATGTAATCTAGGTCATGGCAGACCCCTTGGGAGTCCAGATAGTAGTTAATCGAGGGGCATTCGGGCAGTTGGGCGATCGCGGGCGTAGGGGTTAGGGCGATCGCTGCCATGCCCATCAGTAATGTTTTCATAGATCTCCTAGGGGTACTGCATCCTCTCCATTTTATCCATGGCCAAGGGAAGAATCCTGCAACCACTGGTTAAAACTCCCAGGGCCAAATTCCATCTCAA # Right flank : TACCTCCCATCTTAAACCCAGACAGGGCGCGCTGTCTAGGGGCTATTTGCGACCCCCCCCCAAAGATCGGGACAATACACAACAAAATCACCTGTGGAAAACGGCTGAAACCCTTACCCAGCAAGGCTGCGAACCCTCCGACGCAAAATCGTTGTTTGAGGCCGATCGCCCCACCCCTCGCAACCGTCACAACCAACCCAGAAATCCCCATCGATCCACCCCTCAAATAATCACCGAACCCGGCACCTCCGTCAGCGGAACCCCCCCCCATACCACCACCTGCCCCAACGTATGGCCCGATAGGGGATAAAACCGCACCGCATCCTCCTCCCCCTTGAGCCGTGGCCGCAAGCGCCTTTGTAGCTCCTCATACTTCTTCACCGTCAGCAAACACTCAAACACACTGTATTGTACCCGCCGACCATACCCCTCCAGCAAATCCGACACCGCCTTGCGGCGCTTATCACTGGGAATATCATAGGTCACCACATAGAGCAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 590677-591841 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235933.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig5.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 590677 36 100.0 40 .................................... GGTACGAAACAACATCGGGGACCATCTTGGCCCAGAAATG 590753 36 100.0 35 .................................... TTGAGAAGTATGAGGGTGGGATGTATGAGGCAATG 590824 36 100.0 38 .................................... ACCTACTACACAACCTGATGATGAGCCTAAGATCAGAA 590898 36 100.0 37 .................................... ACAATGCCCCATCCGCCCAATCCGCGATCGACCGGCT 590971 36 100.0 38 .................................... CAACTCCCCCCTGGGTGAATGGCGGGTGCGTGATTTCT 591045 36 100.0 42 .................................... CCGAAGGTGAGAACTATCGTGCTCTGGTAGAACGTTGGGCGT 591123 36 100.0 42 .................................... CCCCCAGTCTCCGGGAATGGGCAGGTCTTCATCTGGAAGATT 591201 36 100.0 43 .................................... TCGGGGGGATAGGTGCCCTGATCTATCAGGGTTAGCAGGTTCA 591280 36 100.0 38 .................................... AAGGTTGCTTTGGCCGCAGCTCAAGAAGCTAAGAAAAA 591354 36 100.0 37 .................................... GTGGTTACAAACAGTGGATTTGGGGAAACATTTTATG 591427 36 100.0 43 .................................... CCCCACGCTCCAGTGGGCTGAGGCCATCGCTTTTATAGAAGAA 591506 36 100.0 38 .................................... CACTACATAGCGGAGGCACAGGTTAGGATTAGACCTTG 591580 36 100.0 39 .................................... CTATTAGGGGGACGATTGAAAATCTGAAACAAGGGGACA 591655 36 100.0 38 .................................... AATGAAGTCTCCATCCAAATGGAAGGACCTTTAAACTC 591729 36 97.2 41 ...................................A TTTTTATCGACCTAGGTAAGTCGTTAAACTGCCTATGTTTG 591806 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 16 36 99.8 39 GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Left flank : CCAAGCTACCCAACGGCGACAAGCCTATCAAGTCAGTTTCCGCAGCGAAGATAACCAAGCTCAGTTTGCCGTTCATCCTGCCAACATCCCCCCCACCCGTTGGGAAAATCTGAATGATCAGGTTGCCCTGGATATGGGCGTAACCTTTGGCGATCGCATCACCGCCAGTCCAGATCCTGATTATGATGCCCTGGTCTTCAGCCATCAGGGGTTTGTGGAGACGGCGATCGTGGGCCTGGAGCAGGACAGCCCCGCTGCCAATGCTGCCCTGGTCTTTGAGATGACCACTGGCACAGTTCAGCGTTGCGTTAAGCTCATGAATCTGCTGGGATCGATCCGGGTTGATGGGGACTGCGATTAAGCCCCTCACTCTGGGACCGGCGGCGATCGGTGGTCAGATTTAATACATAGGTACTATCCTAGGGCCAAAAAAATAGCCCCAAGCTGACCTGGGACTGGGGGAATTTTGCCGGGGCTAGATGTCTCTAACCCCGATCTAA # Right flank : TACCTGCCATCTTAAACCCAGACAGGGCGCGGTGTCTAGGGGCCGTTTGCGAACCCTCCGGTAAAGTGGGACAATACACAACATTTCCGAGACTCCAAAAACGCTGAAACCCTTACCCAGTAAGGCTGCGAACCCTCCGACGCAATTACGTTGTTTGAGGCCGATCGCCCGACCCCTCGCAACTGTCACAAGGGCCGGGGTCTGGGGATGGCAATATTCCCAGCAGGGTAACCTTTGCGCCGGGAGCATTGGGCCGCGATCGGGTGCGGGGGAGTGGGTCATGGGGGAATGTTCTAGGGGACGGGGGACTCACTTTTGATTAACGCTATAGTCAGGCTCAAGAATTCGTACTTGATAGTTGCTAACCTCAACTTCAGCAATGGGAACTGTGCAAGTGTTTCGCAGTGTTTTCCATAGAACAGCATCTTGATACTGTTCATGGTCTGGGGGAATGTAGTTCAAGAGACTATCAGAGCAAATGACAAATAATCGCTCTTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1354190-1353118 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235933.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig5.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 1354189 36 100.0 37 .................................... TCAGTCTCTATCTTGCGTTCTTTATAGAATGCAATTC 1354116 36 100.0 36 .................................... ATCCGACTGATCGCCGGATCATCGATCGCATAATTG 1354044 36 100.0 42 .................................... CAGCCACTGAATAAAGCTGGCATCCGTAGCTATGGCTGGTGG 1353966 36 100.0 39 .................................... GGCTCGGTGTTAACCTTGCCTTGTCTCTCTCTCCCTTTG 1353891 36 100.0 39 .................................... TCAGTTCCTCTTTCTTAGGTGCTGTGGGTGTAGGTAGGC 1353816 36 100.0 35 .................................... AAGCTAGAAGTTATCTTCAGGAAAAGAAGTAATCA 1353745 36 100.0 34 .................................... CACAGCTTGGATCCTGCTACTTTGTAAGTCTTGT 1353675 36 100.0 36 .................................... GGTGTTAACCTTGCCATGTCTCTCTCCTCTTGATGC 1353603 36 100.0 36 .................................... TAAAGCCCGAACCTCGACCTTCCTTTACATCGTCAG 1353531 36 100.0 39 .................................... TAGGTATAAACTTTGTCTGAGCCTGTGGACTTTTGACCA 1353456 36 100.0 39 .................................... TGGTAACAGTGATGTTCTTCACGATGGATCCTCATTCTA 1353381 36 100.0 41 .................................... AGTTCCACCTTGTAGAACTGTTCAGGCTTAAGTCCTAGCTC 1353304 36 100.0 37 .................................... GGGGTAGTAGATACTTAATGCCCAATAGACATTTTCG 1353231 36 100.0 42 .................................... TTAATTCACTTTGGGAGTATCCAAACAGGGTGATAGCTTCCA 1353153 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 100.0 38 ATCCCCACTCGCTGGGGATCCTAATTGAATGGAAAC # Left flank : TCGTTCTGCCGGTAGGAACGAGGGTGATCAAATACAACGACCCCGAACTTGTCGGTATCATCGTTGGGGTCAATATTCCCTGCAACTTTGAGATCGAGGACTTCATTTATGATGGACAAGTCTATGCCAGTTACAAGGTACTAGGGGAGTTTGATGCTGAGTGGTATCGGGGGCATGAGGTGACGCAAGTTTAGAACGGAGTCCCAAATAACTCTGCAAGATGTCGATCATTTTGTGACAGTATTGGCGTACCAAATAACTCTGCAAGATGTAGGTCGTTTTGTGACGGCATGGGAGTCCCAAATATTTTAGGTAACTCAGAGTTACCTATTGCGGCGCGGGCAACAGTGCCAAATGCTCCAGAGGGAATATTTAGCGGCGCTCCACTGGAATCGTATAAGGTTGGCTCAGGAATATTTAGCCAAGGATCCGAAGAAGTTTTCATGACCCTGGAGCGAGATTGACGAGCAAATGGGAGATTTTCTTTGGGCATAAAAAGA # Right flank : ATGAAGCCCGAGATCGCCCCTGTCCCCCAGTCCCAAGACATCTTGGGGCTATTTTTTGGCCCTAAAGTAGTACCTATGTATTAAAACTGGCCACCGATCGCCGCTGGTCTCACAGTGCGGGGCTTAATCGCAGTCCCCATCAACCCGGATCGATCCCAGCAGATTCATGAGCTTTACGCAACGCTGGACTGTGCCAGTGGTCATCTCAAAGACCAGGGCATCATTGGCAGCGGGGCTGTCCTGCTCCAGGCCCACGATCGCGGTCTCCACAAACCCCTGATGGCTGAAGACCAGGGCATCATCATCAGGATCTGGACTGGCAGTGATGCGATCGCCACAGGTTGCGCCCATCTCCAGGGCCATCGGATCATCGCCAAGTCATCGTTCCCACACCCCAGGGGCATAGGAACGATCGCGCCGCAGAAGCCAGGGCAACCCACAGCCCCCTAAACGGGGACCGCTTCCAGGAGTTCCGTGACGTTTTTGCCCGTTTCAAAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGCTGGGGATCCTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 4 1354900-1355687 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235933.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig5.9, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 1354900 36 100.0 36 .................................... CCCCTGGTGTCAGCCCCCCGTTCCCGAAGCCCCAGC 1354972 36 100.0 36 .................................... GATCGATCCCGGCAGCCACCTCCGGGTTGGGAAAAT 1355044 36 100.0 44 .................................... ACAGCCTATTGGGCTACACACCGTCCCTTGGGAAGTAGCAGTTT 1355124 36 100.0 36 .................................... GGCTTCCGGTTCCAAGTGGAGGGCACCACCCTTCAC 1355196 36 100.0 43 .................................... ACTTATTCCTCGGCTACATCGCCTGGGAACTTATGTGCCATGA 1355275 36 100.0 36 .................................... ACGGCATTCAAGGAGAGAAGCTACTCTTTATCCCTT 1355347 36 100.0 40 .................................... TCAGGCCATCGACCCCCTACGCGGTGCGGTCTCTCCCCTC 1355423 36 100.0 37 .................................... GACGAGATTCTCGCCGATCTTGAGCTGGATTTCTCCT 1355496 36 100.0 44 .................................... CGCTTCTCATTCCGGCCCCATCCCCTCGGATGCCGGGTGACCTT 1355576 36 100.0 40 .................................... CTTGATGATGCCAGGGCTACCTTGGACATCCAGTCCCATT 1355652 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 11 36 100.0 39 GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Left flank : GCCGTCACAAAACGACCTACATCTTGCAGAGTTATTTGGTACGCCAATACTGTCACAAAATGATCGACATCTTGCAGAGTTATTTGGGACTCCGTTCTAAACTTGCGTCACCTCATGCCCCCGATACCACTCAGCATCAAACTCCCCTAGTACCTTGTAACTGGCATAGACTTGTCCATCATAAATGAAGTCCTCGATCTCAAAGTTGCAGGGAATATTGACCCCAACGATGATACCGACAAGTTCGGGGTCGTTGTATTTGATCACCCTCGTTCCTACCGGCAGAACGATCGACATGTCAAAGCTAACTTCCTTGGCTAAGTCTTCGTAAGTTGGAATAGTCATGGCGTTGTATCCTACAGATAGTGAAGAGGCTAGCCCCCAGGCGTAGGGGGCTTTTCCTGTTTGTGGGTCGTGGTCTGGGTCAAATCCGCTTCAAGGCATTCCAGGGAGTAACGCCGCACTCCATCAGGGTTGTGAGCCGCACTTGAACCCCCTGG # Right flank : TACCTGCCATCTTAAACCCAGACAGGGCGCGGTGTCTAGGGTCCATTTGCGAACCCTCCGGTAAAGGGGGACAATACACAACATTTCCGAGACTCCAAAAACGCTGAAACCCTTACCCAGTAAGGCTGCGAACCCTCCGACGCAATTACGTTGTTTGAGGCCGATCGCCCGACCCCTCGCAACTGTCACAAGGGCCGGGGTCTGGGGATGGCAATATTCCCAGTAGGGTAACCTTTGCGCCGGGAGCATTGGGCCGCGATCGGGTGGGGGGCAGTGGGTCATGGGGGAATGTTCTAGGGGACGGATGGGGGGGTGGGGAAACCTGTGACGGGTAGAGTTCGATCGAGTCAAATTTAATACATATATACTACTTTAGGGCCAAAAAATAGCCCCAAGATGTCTTGGGACTGGGGGACAGGGGCGATCGCGGGCTTCATGTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGATAACGCCAGCCTCACCCCCGTTCTCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 1356124-1357059 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235933.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig5.9, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 1356124 36 100.0 38 .................................... AACGCCAGCCTCACCCCCGTTCTCGTTCTCGAACCCGG 1356198 36 100.0 40 .................................... AGGCTCACGGGTATGTGGCTTACATCGCGCCAGGTCGTAA 1356274 36 100.0 41 .................................... AAATATGGGATGGCCTTGATAGCTCTAGAATGCCCCCAGAT 1356351 36 100.0 43 .................................... CTCCCGTGAGTCCAATAAATCCTGGGTTGCCCAGGGTGACGGT 1356430 36 100.0 41 .................................... GAACCCCTAGCTGCATACCCATCAGTAGGGGTGGCTCGGAT 1356507 36 100.0 38 .................................... GACTTAAGCGGGAAATTGGCGAGATGGTTCGTCAGATA 1356581 36 100.0 39 .................................... ATTCGCTGACCGACGCGCATTCCTCGCCTGGGCAACAGG 1356656 36 100.0 37 .................................... CCTCTGGATTCGCTAAGTTAGCGGTCGAGGAGATTCC 1356729 36 100.0 40 .................................... TGGGCTGAGGCCATCGCTTTTATAGAAGAAGTGCCAAAGG 1356805 36 100.0 37 .................................... GAGTCTACAAAAAGGACAGTTATTCCCCGTATCCAGG 1356878 36 100.0 36 .................................... AGCAGGATTTTAGCTCCGAACTATGGCAAGAGTTCA 1356950 36 100.0 38 .................................... ACAAGAAGGACACCTATCAGCCCTACGAAGGGCAGAAC 1357024 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 13 36 100.0 39 GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Left flank : AGGGCTACCTTGGACATCCAGTCCCATTGTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGATACCTGCCATCTTAAACCCAGACAGGGCGCGGTGTCTAGGGTCCATTTGCGAACCCTCCGGTAAAGGGGGACAATACACAACATTTCCGAGACTCCAAAAACGCTGAAACCCTTACCCAGTAAGGCTGCGAACCCTCCGACGCAATTACGTTGTTTGAGGCCGATCGCCCGACCCCTCGCAACTGTCACAAGGGCCGGGGTCTGGGGATGGCAATATTCCCAGTAGGGTAACCTTTGCGCCGGGAGCATTGGGCCGCGATCGGGTGGGGGGCAGTGGGTCATGGGGGAATGTTCTAGGGGACGGATGGGGGGGTGGGGAAACCTGTGACGGGTAGAGTTCGATCGAGTCAAATTTAATACATATATACTACTTTAGGGCCAAAAAATAGCCCCAAGATGTCTTGGGACTGGGGGACAGGGGCGATCGCGGGCTTCAT # Right flank : TACCTGCCATCTTAAACCCAGACAGGGCGCGGTGTCTAGGGTCGGTTTGCGAACCCCCCCCAAAGATCGGGACAATACACAACAAAATCACCTGTGGAAAACCTCTGAAACCCTTGCACAGTAAGGCTGCGAACCCTCCGACGCAATTCCGTTGTTTGAGGCCGATCGCCCGACCCCTCGCAACTGTCACAACCTACCCAGGGATCCCCCCCTGCAACTTCTCCCAAATCCGAGTCACGATCGCCATAGAGCAATCATCAGCGCAGAAACCTGGTGTTTTGGAGGGTTTCGACTTTCTGCGGTTGCTTTTGGTGGATTTGCTGGGCATGGCTAAGGGTGAGAGTGGAATGAGTGGAATTAGAGATCTAGTTTGTCGGGGTTCTTGCTGGACTTCTTCTGTTCAGAGACCAAACGTCGTTCCACCTTCTTGACATCTTCCGCCGGAGGCAGTGACTCAGGTCGAATGCCCCGCTCTAGCAGCGTTTGTCGTACCGCATCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGGATCCCCAGCGAGTGGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 6 1499736-1494605 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235933.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig5.9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1499735 36 100.0 41 .................................... CCGGTATGAGGGCCAGTCTGCGGGCAACCAGTAAGCGCTTT 1499658 36 100.0 38 .................................... TTCGCGATCCTGCAAATGGACCGGATCCATGTACCGCT 1499584 36 100.0 41 .................................... ATTCACTCTAACTTCCTCCTTTTTGGAAAAGGGAGTTGTAA 1499507 36 100.0 40 .................................... ATTTCGGATCAATACAAACGGGCTGGTGTTTCCGTTTTCC 1499431 36 100.0 38 .................................... CCTTTAACCTTAAAACTGTTTACTACTTAAATATAGCA 1499357 36 100.0 38 .................................... CTCATTACATTCTTCTTGACCGCAGTCTTCTTCTCAAG 1499283 36 100.0 45 .................................... CGGAAGAATGAGGGTGTTCGGGCATTGGCGCTACTGCGTGGCCAA 1499202 36 100.0 41 .................................... TTGTAGAACAGCTTGGCAACTCCAATAGGCTCTAACAAAGA 1499125 36 100.0 39 .................................... TCTTACGCTTTGTTGCAAGCGGCGTTATCCGTAACAACC 1499050 36 100.0 38 .................................... AGAATTAAGTCATCTAGGTTTAATGTACTTTTAAGCGC 1498976 36 100.0 40 .................................... TCAACACCATCAAACAGACAGCCGAACGTGATAATTCCCC 1498900 36 100.0 38 .................................... TTATCCCCAATACCCAGGAACCGTCGCTGCACCTGGCC 1498826 36 100.0 35 .................................... GTGGTTCACTCCGAAGGGTGTGGACTTGATGTACA 1498755 36 100.0 36 .................................... TGAACGTACCGCCCGTTGACGGCGTGGAAGTCCACA 1498683 36 100.0 37 .................................... TCAAACTCTTCTTTGCTATTGAATTTCATAACAATCA 1498610 36 100.0 36 .................................... CTCGTTGTAGGCTTCCCAGCCGCCCTCCGATTCTTC 1498538 36 100.0 36 .................................... GAGATCTTCTCGGCCTCTCCGTGTAAGTAAAACCAG 1498466 36 100.0 38 .................................... ATAACTGCCCACATCGGTATGGGTAATACCCTTCTGTG 1498392 36 100.0 43 .................................... GGGATTGAGGGGGTTGTTAGTCATTGAAATGTCCTCCTGGACT 1498313 36 100.0 38 .................................... CCGTTAGCTCCCCGGATATAGCTGGCCTTAGTCGATAT 1498239 36 100.0 40 .................................... CGTAGTCTTCGAGGCATTCGAGGTCTTCCATCATTGTCGT 1498163 36 100.0 41 .................................... AATACCCACTGCGGTAGTGTTCAGTGGCTCCAAGTCATTGC 1498086 36 100.0 37 .................................... AGCCAGATCCGCAGTTTGGTAGACGGCTTGTACTTGG 1498013 36 100.0 35 .................................... AGGTCTCTGGGAGATTGTCGATAGCGGCCTCTAGT 1497942 36 100.0 40 .................................... TCTGGTTCAACAACCTCAGGGGAAACACCCGTAGCCCCAG 1497866 36 100.0 38 .................................... CAAGATTTGTCTGTATTAGAGGCAGAATTTGATTTACT 1497792 36 100.0 40 .................................... CTTCGCCCATGGACAAATCCGGGTATTGGTCAGTAAAGCC 1497716 36 100.0 38 .................................... ACGCGGACACCGCTGTAGATAGCTTCTATAGCGGCTTT 1497642 36 100.0 39 .................................... CTCACGTTTATTACCACAGAACTTGAAGCCTTTATAGTA 1497567 36 100.0 41 .................................... TTCATAGTTTGTGATATTGATGCCGGTGACTACATCAGACT 1497490 36 100.0 37 .................................... TCGCCGACAATGCAGCGAATCTCAGCACCTGCCTGGG 1497417 36 100.0 39 .................................... AAATTCGCGGTTAAAGTACTTAACCATCGATTTAACTCC 1497342 36 100.0 40 .................................... ACGCGGGCTTCTGCCCGAAGATCACTCGGAACCCCTCTGT 1497266 36 100.0 38 .................................... CATGATGCCGGTGTTAGAGTTGATGCCGACCAAGAAAT 1497192 36 100.0 38 .................................... AATACCCCAGTCCAGGGCACTGAAGCAGATATCGTTAA 1497118 36 100.0 40 .................................... TAGATATCAATCCGGTATGGGGGACTCCCATACGTGTAAA 1497042 36 100.0 41 .................................... CTGATAATCCCCCGTGAACTCGCTTGTGGACCAATTCGCAG 1496965 36 100.0 37 .................................... TCCCGTAGAACCCGCCGCAGTTTTAGGGTGGCTATCA 1496892 36 100.0 35 .................................... GTGTTGCCCGTTGTGGCTGCGATCAGCAAAGACCC 1496821 36 100.0 37 .................................... TCTAGGCGCTTCTGGATGGGAGGCAGTTGCTCAACAC 1496748 36 100.0 43 .................................... TTTAAAGGAATTTGAGATTTTTGAGATTTCTGAAAAACTCAAA 1496669 36 100.0 40 .................................... TTGATTTGCAATCTAACTTGTCTTTCAAGTTAGAGCTATA 1496593 36 100.0 39 .................................... TAACCAACATTCCCGCCCCCATCGCCTTGAGATTGTGAT 1496518 36 100.0 39 .................................... TCACTGGAACAGCAAAAGACACTCCCTGGGTAAGGAGTG 1496443 36 100.0 39 .................................... CCGTTATAAAAAGGAACGTGACCCCAGATATTTCCTGTT 1496368 36 100.0 39 .................................... TTTTGGATCTACGTTTATGATTCCTGTAAATCCTTTGTA 1496293 36 100.0 39 .................................... AAAAGAGCCTTGAACCACGCCCTTTATTATCTGTGTACC 1496218 36 100.0 40 .................................... ACATTAATCTGTCGGTGTATCTTCAGGGTCTCTTCGACAT 1496142 36 97.2 38 T................................... AACTTCAAGTAATCACTTTCGGAAATCTGGGGGCAATC 1496068 36 100.0 36 .................................... CCGGAAGCTGAAGCGCTTGGCGGCGAATCCCATGGG 1495996 36 100.0 38 .................................... GTCAAAGTGTGCCCGTAGTCGGGGCTGTTTAAATGCAA 1495922 36 97.2 36 T................................... ATCCGTGGAATCCGCCATAAAACTCGTCAAAAATAA 1495850 36 100.0 39 .................................... AGGCTTAAAATTTGACAGCCTATCCACTCCGTATAAGCC 1495775 36 100.0 38 .................................... ATTCAAAATCCAAAAATCAGCAAAGCTAACCTAGACAA 1495701 36 100.0 39 .................................... GCCTGTTGGGTATCCGAATTTTGTAATCATCATTCTCCT 1495626 36 97.2 43 .......T............................ GGACTACGACTGTTACCACTTGGGCTGGATAACTATGGCAATT 1495547 36 100.0 41 .................................... AAACTCTCTTTTCTTACGGCGATCCCCAATTACTTTCTTAG 1495470 36 100.0 40 .................................... TATGTTTTATACTCTTCATAAACTTGAATAATACTCATGT 1495394 36 100.0 41 .................................... TAACATGATTTTACCTCGAGGGTACGCAATTAAAAATGCGG 1495317 36 100.0 40 .................................... CCTCTAGTTCTTCTGTGGTCATATTCTTGGTCACAGCTAT 1495241 36 100.0 37 .................................... AATATTTGGACAAGAGTAGCAGGTACTTTTAGATCTT 1495168 36 100.0 39 .................................... CATTAGAAGATAATTATACTAATGCAATTTGTAAGTCTC 1495093 36 100.0 44 .................................... CTCGTTGGGCACCAAGATCCCTGTCTCGAATTGCTGACTGCTGC 1495013 36 100.0 41 .................................... CGGCTGACTTCCAGGCGTAGGGACAACTGAGAAATGGGGTC 1494936 36 100.0 39 .................................... CTTTTCGTCCCCTGTCCACACTGGTGGACGCGGCTAGTG 1494861 36 100.0 38 .................................... CATGACTTCTCCCTCTCCCCCAGGGGTGCTCCCGGCTC 1494787 36 100.0 38 .................................... AGCTGTAGACTGGCTGTGCCTTGGCTGTAATCTCTACC 1494713 36 100.0 37 .................................... AGGATTAGCCCGAACGGGAAATCCTCTTTAGTATTGG 1494640 36 97.2 0 .......................A............ | ========== ====== ====== ====== ==================================== ============================================= ================== 69 36 99.8 39 ATCCCCACTCGCTGGGGATCCTAGTTGAATGGAAAC # Left flank : CTTTGCGGCAAATCATGAAACAGGTTACTCCGTTGCCTGACTGTAACCCCTTCGATCGCTTAAACCAGGACATTTTGGATTCTTTGAAGACCTAATCAAGTATATCCCCATTCTGAGCTAAGGGCCATAGCCAGAGATCAACTGATCTTGTGTCACTTTGGCTTGGGCATAGAAGTCCGCAATAGCCTGAAGCTGTGGGAACCGGGTAACCCGATCGTGGCTAACAGCGGCATCTTGCATCCTGATGATTGCGACCTGGAGATCGGGTCGCGGATTTGGGAGAAGTTGCAGGGGGGGATCCCTGGGTAGATTGTGACAGTTGCGAGGGGTCGGGCGATCGGCCTCAAACAACGTAATTGCGTCGGAGGGTTCGCAGCCTTACTGGGTAAGGGTTTCAGCGTTTTTGGAGTCTGGAAAATGTTGTGTATTGTCCCCCTTTACCGGAGGGTTCGCAAACGGCCCCTAGACACCGCTCCCTGTCTGGGTTTAAGATCGCAGGT # Right flank : CTGAAGCCCGCGATCGCCCCTGTCCCCCCCAGTCCCAAGGCATCTTGGGGCTATTTTTTGGCCCTAAAGTAGTACCTATGCATTAAATCTGACTCGATCGAACTCTACCCGTTACAGGTTTCCCCCTCCAGCACCCGTCCCCTAGAACATTCCCCCATGACTCACTGCCCCCCACCCGATCGCGGCCCAATGCTCCCGGCGCAAAGGTTACCCTGCTCCCTGTCTGGATTTAAGATGGCAGGTATAACCGACCTAGTGTCTGCTCCAACCCATGGGGTACCCTAGCCCTAACCCCTCACCGGGGTGATCACCCCCTCACTACCACCACCATGATCGATCCCCAATGCCCCCCGCCCCACCCCCTCCACAGCCCCGATCGCCGGGAAGCCCTAGCCTGGGTTATCCGCGATATTCACCAGAAAGGCTGGGCCACAGGCACCGGGGGGAACTTTAGCGCTGTTTTGCAGCCGGACCCCCTCAGCCTGCTCATGGCCCCCAGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCACTCGCTGGGGATCCTAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 1073532-1075144 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235941.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1073532 37 100.0 38 ..................................... GGATGGCTGTAATGCCCGCCCGACAGTCATCCGACAGT 1073607 37 100.0 35 ..................................... TTTTGGTTTGGCCTGGGCGCTGCCGTTCCCAGGGT 1073679 37 100.0 35 ..................................... TTAGGCTGGTGACAAATGGAGGGAGTCTTAGCTAA 1073751 37 100.0 35 ..................................... TTAACCCAGTCTCACCATGAGACACACGCGACCCA 1073823 37 100.0 33 ..................................... GCCGCGATCTAGGCGATCCATATCGAAAAATAC 1073893 37 100.0 34 ..................................... CTCTTAATAAAGTCAGTCAGTAGCGCAGATACCA 1073964 37 100.0 34 ..................................... TTAAAGTCTATAGCCCGCTATCTAAGTAAATACA 1074035 37 100.0 35 ..................................... ATTTTGAGGATTACGAGCTAGGTGCCTATGACGCG 1074107 37 100.0 35 ..................................... GTGGCTGTTGCAGGGGTGTTGTGGGGTGTTGCAGG 1074179 37 97.3 33 ............T........................ CTTGAAGCTTGATCTCAAGGTACTCCAGAAGGA 1074249 37 100.0 36 ..................................... CTGCATGGTGTGGGCACTTCTCCAGATCCTTGACCC 1074322 37 100.0 36 ..................................... GTGGCTATGGGTGCCTCTGCTTATGGTGGCTATTTG 1074395 37 100.0 34 ..................................... AATTTGGATTTTCTCAGTCCTTGGTTTCAATGAT 1074466 37 100.0 34 ..................................... ACGACAGAAGTTAGGGATCCAACGGTGCGATCGG 1074537 37 100.0 33 ..................................... TGCTGATGAGAACGCAGTTGCGGGCGTGGATTT 1074607 37 100.0 34 ..................................... TCTATGGGGTGGCCGGTTGGACAGCTTGGGCTAA 1074678 37 100.0 35 ..................................... CAGATTGTTGTTGCGGTTTGCGACGGCGTTTCGGT 1074750 37 100.0 31 ..................................... TTGAGTTTTAGAAGTTGTCTGCTAGCAGTCG 1074818 37 100.0 40 ..................................... TGGTCAATCCTAGCCCCCGGTGGCTTTGAAACCCGCTCAG 1074895 37 100.0 35 ..................................... AAAAGATCTGGTCGGTCAATGTGGGCATTTCGATG 1074967 37 100.0 33 ..................................... TCGGTTGATCCGGCGTGCTTTGCTTTAATTTTA 1075037 37 100.0 34 ..................................... CCGTTGGGTCTGGTCGTATCCTTGAAGCTGATGC 1075108 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 23 37 99.9 35 GCGAAAACCCACCAAAACCCCTCTTAGGGATTGAAAC # Left flank : GGGGGCGCGGGTCAATTCCTGCAATCAGTTTGTGGGCTGTGTCGGTCAGGTGCGCTATCAGGTGCTGGGTCCCCAGGATCCGGAGGTGGTGAAGCAGTTGAATACCCTGGCAGATTTCGCCATGTTTGGGGGGGTGGGCCGAAAAACCACGATGGGCATGGGTATTGTTCGGCGTTTGTAGTGTTCTGACCTAAATAACTTAATTCCAAGCAATTTATGATCAATCAAAGCCCGTTTCGATTTTTCTGGTGTAAGGGGGAGGCGCAGATGGGGGGGTGTTCGATAGGGGCGGGGGGCTGGATCGGGGGTGGGGGCTGGGTTTGGGGGCTAAATCGGGGGCTGGAGGTTCGCGCAATGGCTGAAACCCTTGCCATTACTGGGTTTCGGATTTCGAGGTTATGTTCAGGTATTGTTTTAGGAAGGCTATGATGCTATCATTTCTAACATCCGCGAATTTGAACCTTGAAAACCTTATACAATCAGGCTTCCAGACCCGCGCC # Right flank : CAGGAGATCCTGTTTCTGGGGAAGACATTACCCCCACGAAAACCCACCACAACAGAATGCGCCAGAGTTAGGGACTAGCCGAGGCAGTCTTTAACGATCGCCTGCACCACCTTACCATCAGCCTGACCCTTCAGTTGCGCCATAGCCGGACCCATCACCTTACCCATATCCTTAGGAGAGCTAGCTCCCACCTGGGCAATAATAGCCTCAATAATGGCCCGCACCTCCGCTTCCGGCAACTGCTGGGGTAGATATTCCTCCAAAATGACCAATTCTTGAGCCTCCTTCTCCGCCAGTTCAGGGCGATCGGCCTTTTGGTATTGATCGATCGAATCCCGCCGCTGTTTCGCCAGTTGAGTCAAAATCCCCAGTTCCTCCTCCGGATTGAGACTATCCCGCCCCATAGGCCGAATCTCGGTTTCCTTCTCCAAAATCAATTTTTTGATACCCCGCACCGTTTCCAGGCGGATCTTATCCTTCGCCTTCATAGCGGTTTTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAAAACCCACCAAAACCCCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 1335011-1338350 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB235941.1 Prochlorothrix hollandica PCC 9006 = CALU 1027 strain PCC 9006 Pro9006DRAFT_Contig10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 1335011 37 100.0 38 ..................................... TGTAACTTGAGTCACTACAACCCCTACACAATCCCCGG 1335086 37 100.0 36 ..................................... CCGGCATAGCCACGCCTCCCATTCCCTCGATCGGGG 1335159 37 100.0 38 ..................................... CAGAATGTCTAGCCAGCCGCCATAGGCGAGGGTATCAA 1335234 37 100.0 37 ..................................... TTATTGCTCAATGGAACATCAAGACCCTTATGGGTAC 1335308 37 100.0 36 ..................................... AAATCGATTAAATCACGGTGATCCGATCCGTTTTGT 1335381 37 100.0 37 ..................................... TCCACGTCCAGCGCCAATCATCGGGGGGACTGCCCTT 1335455 37 100.0 41 ..................................... ATCACGCCGACGATCGCAACGGTACCCCCAGGCTATCAAAG 1335533 37 100.0 38 ..................................... TCCTAAAGTGATGGGGCAATCCTAGGACTGCCCCAAAG 1335608 37 100.0 40 ..................................... TGGAGACTCTGGACGAGATCAAGATCGCCAAGGGGCGGGC 1335685 37 100.0 36 ..................................... TACAACTATGTTGGTACCGCTGGCACAACTCCCATG 1335758 37 100.0 33 ..................................... GCGACATTCGCCGCGTGTCCTTGGACCATGGCG 1335828 37 100.0 35 ..................................... TTCTGTCTAAAAAGCCCCTCAGGATTAATCCGAAG 1335900 37 100.0 36 ..................................... AACATCATTTGCCCCCCTCAGTCCTTAACTCTGGAT 1335973 37 100.0 36 ..................................... ACATGGGGATGGACTGGAGGGAAGCCGAAAAGAGCC 1336046 37 100.0 34 ..................................... CGGCCAAAGTCCTCGGCGGCGGTGCCCATGTGGG 1336117 37 100.0 40 ..................................... GGCTTAAGTTACGCCAACGGATTTAAGATCACGCAAGGGG 1336194 37 97.3 36 ...........T......................... TAATTGCTCGGCTATTGCTCTGGTAATAAGTCTCAG 1336267 37 100.0 37 ..................................... GTATTCCCGCTGTAGTTCCTTGGCTTCTGCCTTTGCC 1336341 37 100.0 36 ..................................... AAGTAATTGGCTGGGATCGTGCTGACCTACAAGAAG 1336414 37 100.0 35 ..................................... AAGGATATAGCGGGACTGCTGACTGAATGGATGGC 1336486 37 100.0 37 ..................................... ACCCAGGGGATTCCTGTCCCGCTGGGTATCTCTATTT 1336560 37 100.0 37 ..................................... CTGTAAATACTTCCCATAGACCTACACCCGATCCCAG 1336634 37 100.0 37 ..................................... ATTCGAGATCGCCTTTTTGAGACAAACCCTTGGCGCG 1336708 37 100.0 36 ..................................... TTAACCGGGATGCACTTGGCTATTTCTGGCGGGTTC 1336781 37 100.0 35 ..................................... TGGTTTGTAGCCCATTCATTTCCCCACGGGCGATC 1336853 37 100.0 36 ..................................... CCTGTGTGGTGCAGTGTGCCGCCAAAAAAAGAACTG 1336926 37 100.0 35 ..................................... GTCCAGGGGTTCTCCACACCGCCAGAACCCCGTCC 1336998 37 100.0 33 ..................................... TGGGATATAGTCTGGGCTTGGGGGGTAGGTTGA 1337068 37 100.0 36 ..................................... TCGCCTATTCAACTCATCCGCCCTGTAATTAATTCA 1337141 37 100.0 36 ..................................... AAATTTTAAGCCTTTGTTCCCAATAGACAGCAATTC 1337214 37 100.0 35 ..................................... TTGAGGACATCCCCCAGAGCTAACCCAGCCGCTAG 1337286 37 100.0 40 ..................................... AAAGCCTGCTTCGGCACGACTGATTTGCTCGGCCCGGTGG 1337363 37 100.0 37 ..................................... TATCGGCTCATTCAGGACTACCGCCCAACTCTAGTAG 1337437 37 100.0 36 ..................................... ACTTGTCCCGGCTTGTGTATGGGGGTGTAGTTCATG 1337510 37 100.0 34 ..................................... CCCGGCGGCTTCTGATGCCCTAGCAATGCCCTCT 1337581 37 100.0 35 ..................................... AGCAGACGCGGGCCTTATCCAGACTGCCCTGATAG 1337653 37 100.0 36 ..................................... ATTGCCGCTGCCATGGAATCGACCTGCCTTTACCAG 1337726 37 100.0 36 ..................................... TCCGAGAACCGTGGTGGGGTGGAAGAAGCAACTGCC 1337799 37 100.0 35 ..................................... ACCGCTATGCCGGGGGTAAGACCACAGTTTATAAG 1337871 37 97.3 39 ............T........................ TTCGCAGCCCAAGCACTTGTTTATAAGTTGAAGACTCAG 1337947 37 100.0 36 ..................................... AGTGGAACTGAGACGGTGGATCGAGGCATAATGAAG 1338020 37 100.0 40 ..................................... TCCCCAACATGGCACCGCCCCCCATCGGTACCAGCTACAG 1338097 37 100.0 36 ..................................... ATCGCCCCCGATCGCACTCCAACAAAGATGGCTCGG 1338170 37 100.0 35 ..................................... GATGCTGATCTATCTGCGATCGAGGCCGAACTAGC 1338242 37 100.0 35 ..................................... CACTTTGGGAGAGGTCAAGGCACGGGTCAAGGTTT 1338314 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 46 37 99.9 36 GCGAAAACCCACCAAAACCCCTCTTAGGGATTGAAAC # Left flank : GACGTTTTTCGCGGATATCCCTGTGACCAATGTGGTGGAGTTACACATGGAGTTGATGGATGAGTTTTCCAAGCAGCTCAAAATGGAGGGACGCAGCGAAGAGGTTTTATTGGATTACCGGCTAACCCTTATTGATATCATTGCCCATCTCTGCGAAATGTATCGCCGCTCTATTCCTCGGGAAGATTAGGCTGGGGCGAGTCTCTGGGGATTGTGAGGGTCACGGGGGACTGATGGGGGGCTGTCGGTGTGGGGGGGTGTGCGCGGATGGGGGGGTGTTCGGCGGGGGCAGGGGGCTGGATCGCAGGAGGGGGCTGGGTTTGGGGGCTAAATCGGGGGGATGGGGTTCGCGCAATGGCTGAAAGCTTTGCGGTGACTGGGTTTTGGGGTTTGGGCTTGTGTGCAGGTATTGTTTTGGAAACGCTATGATGCTATTATTTCTGATATCCGCGAATTTGAACCTTGAAAACCTTATACCATCAGGCTTCCAGGCCCGCGCC # Right flank : CTTGTTCTGCTTGACTGACAGATCTCCTGAAACCGTTGGAATTTTGTTACGAGTTTGCGTCGCTTCAGGGATCTGTATCAGTCATTCGGGAGCAAAGGGCTTAAGCCCCTTGTCTAGTCGGGGACTTGTGTTAGTCATTCGGGAGCAAAGGGCTTAAGCCCCTTGTCTAGTCGGGGACCTGTGTTAGTCATTCGGGAGCAAAGGGCTTAAGCCCCTTGTCTAGTCGGGGACTTGTGTTAGTCATTCGGGAGCAAAGGGCTTAAGCCCCTTGTCTAGTCGGGGACTTGTGTTAGTCAGTCAGGATTTTGTCTTTGCTGAGATAGGGGTGTGAGGCCAGGGGCTTCCTTAAGACTTCTTTTAAAAAACAGGATGTCCCCCGCTTCGGGGAAGCTTACCCCTTATGTTGAAAGAGGTCTATTCTCCTGCGTCCCCTATCCATGATGATTGATTTGTTATGAGTTCCTTGAAAAAGACCTATGTTTTGAAGCTCTATGTGGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGAAAACCCACCAAAACCCCTCTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //