Array 1 76523-74608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUB010000013.1 Clostridium jeddahense strain 1001270B_150601_B3 NODE_13_length_109968_cov_18.8712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 76522 33 100.0 33 ................................. CGATTATCATTGGGCATCTTGACACCTGCAGAG 76456 33 100.0 33 ................................. CTCTCAATTAAATATTTGCAAAAGAACTCAGCA 76390 33 100.0 34 ................................. AGCACTGAAAACTCCGTACACGGCGGCGCAGCCA 76323 33 100.0 33 ................................. CCTGTTAATGGTAGTCTACCATAAGTAGAAAAG 76257 33 100.0 35 ................................. AAATGACAAACAGCCCTCTGCGCTTGCAGGGGGCT 76189 33 100.0 34 ................................. GGATGTGGAAATCAGCGGGTATCTGGCGCCGATG 76122 33 100.0 36 ................................. CTCCCAAAGGAATATAGATTTGTTGGCCGGCCGCGA 76053 33 100.0 34 ................................. CTGCCATTCCAAAGCGGCGAGATTCGCTTTTCGC 75986 33 100.0 34 ................................. AATGGATGAACAGCAATGCCGCGGCGGGAAGCTG 75919 33 100.0 33 ................................. AACGAAATGGAATCCTTTATCCGTACTCTGGTT 75853 33 100.0 35 ................................. CGAAAGACCCGCCTGCCGAAATTGGTAAGATAACC 75785 33 100.0 33 ................................. GGCGCACTGGTGGGCGGCGTATCGCCCGAATAT 75719 33 100.0 35 ................................. TTCCTCTGGTAAACAACAAAAAGCAGCACATTACC 75651 33 100.0 34 ................................. AATATGTCACAAGTAACACCTCAGGTATTTATAC 75584 33 100.0 34 ................................. CTCCGTTGCATGTGTTTTGCCGATCAACTACAGC 75517 33 100.0 35 ................................. CGCAACCGCAGGTTGTGGTACGATTTGGGTTGACG 75449 33 100.0 35 ................................. TGGGTCAAGCAGGATGTCACCAATCACGGCCTGCT 75381 33 100.0 34 ................................. TTTCAGGCGTAAAACTTCCTCCGGCAGGAGGTCG 75314 33 100.0 33 ................................. GCCCTTTGCATGGTCACGTGGCGCGTCCAGACC 75248 33 100.0 35 ................................. GACCAATAGCTCGTCCATACTCCGTCGTTGCCCCC 75180 33 100.0 35 ................................. GCCCTTTGCATGGTCACGTGGCGCGTCCAGACCGG 75112 33 100.0 36 ................................. TATTTTTCCTACACGTTTCGTGTAGGATTATGCAAA 75043 33 100.0 34 ................................. AATAAAATTTGTTTTAAGATTTTGCCACTGTGCC 74976 33 100.0 34 ................................. TTAAAGGGCAATCCCAAGCCCCTGAAAAAGCGCA 74909 33 100.0 34 ................................. TCGCGCTGGGCATCCGCGGAGGACATTTTCCCCA 74842 33 100.0 34 ................................. CAGCATCAACCGCGAACTGGATGAAATGCTGGAA 74775 33 100.0 33 ................................. TCCCGAACAAGCTTGTCAACTACTCTTCCGGGG 74709 33 93.9 36 .........G...........A........... AGCGTGCCATCGGAGTTGACGCTGCGGGCGTTGTTG 74640 33 78.8 0 ....C.....G.AT.....G...A....A.... | ========== ====== ====== ====== ================================= ==================================== ================== 29 33 99.1 34 GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Left flank : TATTCGCGGTGATATTGACGAGTACCCACCGTTTGTCTGGAGGTAGACAATGCTGGTCCTGATTACCTACGATGTGAATACCGAGGATGCCAAAGGCAGCAAGCGGCTTCGCAAGGTTGCGAAAATTTGCGTAAATTACGGGCAGCGCGTGCAAAACTCCGTGTTTGAATGTCTCCTGTCCCCCGCGGAATTATGTATTATGAAAAGCCAGCTGCTTACTGTTATGGACGAAAAGAAAGACAGCCTGCGTATTTATCATCTGGGAAACAATTATAAAAACCGTATTGAACATTACGGAGCGAAACAAACATACAGTCCGGAAGATCTTATGGCATTTTAATGCGAACCGCAAGCGTACATCAAATCCGCGGGGGATTCGCGCATGAAATTGGATCGATTTATAGTGAGAAGCTTTGCTAACCTGCGATTTATTTTCTTTTTAATGTGAATGATTACTAAGCTTTAATCAAGATTGTTCCGTTGAACTTGTTTGTTTTGCA # Right flank : TTGACCAGTCTGACAAATGATACTTTTGATGTTTTCCCGCCCGCATATTAAGTTTTTACACTGTGCTTCCTCTGGCCGATTCAAGTAAATATTTTTAAAGTCGATGGAATGCCCCGGTTTACTCTGCGTTTACATTGTTGGTATACTATAAGCAATAGAAAGCTGGAGAGGAGGCGCATTCATGGCCGCCATTTTAGTCATTGATGATGATCCATATATACGGGAGCTCGTGAGCACCTTACTGCATAATGAAGGCTTCTCGGTACAGGAAGCCCGGAATGGGCGGGAAGCGCTGCAAAAGCTGAGTGAAACAAAAATCGACCTTTGCGTGCTGGATTTGATGATGCCCGAAATGGACGGTTTCGAGTTTTGCGGTTATGCGCGCCGGTACTATGAGGATTTGCCGATTCTGATGCTGACGGCGAAGGGCGAGATCAGCCAGAAGGTGAAAGGGTTCGAGCTTGGAACAGACGATTACCTGACAAAACCATTTGAAGGCG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCTCATGCGAGGGACGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 167802-167431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUB010000004.1 Clostridium jeddahense strain 1001270B_150601_B3 NODE_4_length_251785_cov_19.7877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 167801 33 54.5 28 AATTTG....CCGT.T...T....TGC...... CAGCGTTATCGGCTTGGCTCTGGGCGGG 167740 33 78.8 36 .C....C....A..A..GGA............. CACTGTTGTAAGGCTTGGCTCGAGCCCTCGGGCAAT A [167729] 167670 33 78.8 38 A...T.C..T.C.....G........G...... CGCAAGGGCAGGCCGATCGTCGTTCAGGGTCATTTGGA 167599 33 100.0 34 ................................. CCAAGGCATCACGTTGGCGGGGGTTCTGCTTGAT 167532 33 100.0 36 ................................. AACTCGGAAATTCAGAACGAGCCGATCGATCCGGCG 167463 33 75.8 0 .CT...CC..A...A.A...T............ | ========== ====== ====== ====== ================================= ====================================== ================== 6 33 81.3 35 GTCGCTTTCCGTACGGGAAGCGTGGATTGAAAT # Left flank : AAAGATATCCTGACAAACGCGTATGATGGCGCGGCCAAGATTCTTTCCGATCATATGGATAAGCTGCACGAGGTTGCAAAGTATCTGTATCAGAATGAAAAGATGAGCGGCGAGGACTTCCAGAAACTGATGAGCGGCGCCGCATTGCCGGCTGCTGCAGGGCAGATACCGCCTCTGCCGAAGCTGGATACGGAGCTCCCGCAAGTGGAGCTTCCATCGGCGGACGAAACAGCTGAATGATGAGTTTGGAAAAGGGGAAATGTTGCATTTCCCCCTTTCCTTGTCTCGGCGGACCATCGAAAAATGGCACGTGGTTTTGCTCTTACTGTGTTGCTGTATACCAGCAGGGAGAAGGCGTCTAGGGACGCGCTTGTGCTGCAGTGGTTGCCGCCTTGACGAGATTTTCGGCGGCAATCTGTTTTCGATACGGTTTCTTCGGGGGTACGCTCTGTTTCGACAGAAAACAGCGGCGCGTTTGCTTATCATCAAAAGCGGGAAGC # Right flank : ACGTTTCGCACCTGATAGGAGTTCGGCGCGTTTGGCGGTTTGACCAAACAAAACAGGAATGGTATCACCCCGGGAATGGCCCGGGCAGAATTCGAAATGCCAAAGCCCCGGTGATGGGGCGAGCGGCAGGAGGGAAGCTATGGCAAAAAAGACGGCATATGGAAACGATAGTATCTCGTCGCTCAAGGGCGCAGACCGTGTGCGCCGACGCCCGGCGGTTATTTTCGGCTCGGACGGCATCGAGGGCTGCGAGCATTCCATTTTTGAAATATTGTCCAACTCCATCGATGAAGCCAGAGAGGGCTTCGGACGGGAAATCACGATCACCTGCTTCCGTGACCATTCGGTAGAGGTGGAGGATCACGGGCGCGGCATTCCCGTGGACTATAACCCGACGGAAGAACGCTTCAATTGGGAGCTGGTATTCTGTGAGCTGTACGCGGGCGGCAAATACAATAACGATTCCGATGAAAGCTACGAGTATTCACTGGGCCTGAACG # Questionable array : NO Score: 8.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.06, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTTCCGTACGGGAAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.38%AT] # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32276-33435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMUB010000012.1 Clostridium jeddahense strain 1001270B_150601_B3 NODE_12_length_117980_cov_16.0319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 32276 32 100.0 36 ................................ AATCAAGTGAGAACACAGTATGCCAAGTCAGGCGGG 32344 32 100.0 34 ................................ GAGATACTTGATGAGTCTCATAATTTCGCTGGCT 32410 32 100.0 34 ................................ CATTCAGCAAAGGCAAGCTATAGTTACACTCCAC 32476 32 96.9 35 ...........A.................... GTAGTAAAACATAATTCAAATAAAAAAATTCCCGC 32543 32 100.0 35 ................................ ACAGTGGACTGATGTTGGAAAATTACAAGGCCCGC 32610 32 100.0 35 ................................ ACTCACGCTGGACGGCTTAAAAAAGGCAGTAGCTC 32677 32 100.0 33 ................................ TTCCATAACCAAATGCAACATCACCGTGCTGTC 32742 32 100.0 35 ................................ GTAACCATCTTGTGGTCTTTATTTGGTACCAGGGC 32809 32 100.0 33 ................................ GGGCAACCAACCAAACTCAAAACCCATTTTTAA 32874 32 100.0 35 ................................ CCCGGTAATGGTACTGGACGAGAGCAATAAAAATG 32941 32 100.0 34 ................................ GGTTTCCGGCGCAAATGCGCGCAAAGGGCGCGCG 33007 32 100.0 33 ................................ TGGCCCGTCTGCGGGCCCTGCGGCCCTCATCCG 33072 32 100.0 36 ................................ GGTGGTTCATGGGTATCCAGGTTCTCGACCTTGGCT 33140 32 100.0 34 ................................ GTTTAAGGCATGGAAAAGTTGTTCGCTTGTGTCG 33206 32 100.0 33 ................................ AGACTGTTACTTTATAGATAAGGTAATTTTTCA 33271 32 100.0 35 ................................ GACCAATAGCTCGTCCATACTCCGTCGTTGCCCCC 33338 32 100.0 34 ................................ GGCGGCGTAAGTGCCGCCAGTAAATGCCCATATT 33404 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 99.8 34 GTCGCTCCCCGTGTGGGAGCGTGGATTGAAAT # Left flank : AAAATAATTAAAATTCTGGAATTCGGTGGGGCAGTGGACTTCGGATTCCCCATACAGGTCATGAATGTCTGCCGCAACGAGTTTTCAGTGATTTTTGTTAAGGCAGCAATGAAAGGGGAACGATGTGTCGATGTCTTTGAGCAGCTCCAAAAACATTCAGCAGCGCGCCTTTTTGATTCTGCACTGCTGGCTTTCGTCAAACAAAAATGAGAAGAGATGATAGATAAGGGCCGGCTTGCGGTTTTATCATCTTGAAAAGAATGATCGGTCTAAAGTAGAACACATAGGAGCAAAACCCGGTTGTTCTGTAAAACCGGATTTGATTATGCAGTGCGAACCATCAGCGAACAGAAAATAGCAGGGGTATTCGCGCTGATTTTTGGTAATTTAATTATTTTTCAGAATAATCATTGCATGATTAGCAGATACGAGATTGATGTCTGAATAAAAGTTTGTGTAAAGACTCTTATTCTATCTGTTCGGTTTTGTCTATTTTTGCA # Right flank : TTACATGCAGTCTTGGTTCGTGTAGCAGCAGAATTGCATCCTTCCATAAAATTTTTGGGCAATCAGCCGCGAAAATCCGGTATGGGATTCTCTGGCGGCTGATTGTCCCACCTTGTCCTTTCTACATATAATGAAGCACCTATCAAAAAGGAGGGTTTGATATGTGGGCTTGGTATCATTGCCATTGGTGGTTCTGCTATAACGGCCACTGTATCCCGTGGTATGATTAAGAAACGAGTGCGGCAATCGAGTCTGATTTAAAGATCGATTGTGTGCAGGACTGTATGAACACATGGATTTTCCATACACTATCCCCGAGGTGATTTTGTATGGATTATTCCGACTTTTCTTTTCCTCAGGCTCTGTCTGAAGATCGCAAGCTGAAAGAGTTTTTTGATTCTCTTCCGGAGCAGGATCAGCTGCGGCTGATGCAGGGCTGCAGCTCCTACGGCGAATTTTACGACAGGGTCGTACAGGCAATCCCAAAATGCTGAAAAAGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //