Array 1 49140-48383 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793779.1 Porphyromonas sp. HMSC065F10 Scaffold618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 49139 33 93.9 32 N...............................A AATCCTTAGGGAGATGGGGGTGACGGTAGTGT 49074 33 97.0 33 ................................A CCCTACGAGCTGGGAGGGATGCCCGACCGGTTG 49008 33 100.0 33 ................................. GAGACGATGGGGACGCAAATGGGACGAGACACT 48942 33 100.0 31 ................................. GCGAGATGCCACGGGTAACCGTCGCTTCTGG 48878 33 97.0 33 ................................G CCTTGAGCCGTGGCAAGAGTTTTTGATCGCCTG 48812 33 97.0 33 ................................G TCTCACACGCCAGATAGTCCCTCTTGACCTCAG 48746 33 100.0 33 ................................. CTTGGTAGGTCAGTTGCTCCTCGATCAGCTTGT 48680 33 100.0 33 ................................. ACACGATACTCAAGTTTGACCCTAAGCTCCTGA 48614 33 100.0 33 ................................. TCTGGATAGGGTTAATCCTATGCGAGTACTCTA 48548 33 84.8 35 ..............A...........CA...TA GGTCAACAGCCTTCTAAGCTGTGGGTCTTGGGTTT 48480 32 78.8 33 ...T.......TT.....-.....GA......A GCCGTCGGTTTTGTCGCTCAGCCGACTCCTTTT 48415 33 72.7 0 .......T...T.A.....TA..G....C..GG | ========== ====== ====== ====== ================================= =================================== ================== 12 33 93.4 33 GTCGCACCCCTCGCGGGTGCGTGAATTGAAACT # Left flank : CTCGGTCTTTGAGTGTCTGGTAGACCCGGCTCAGAAAGTTCTCCTGATAGAGAGGTTAGTCAGTATCATCGATGAGACACGGGATAGCCTGCGGATCTATCATCTCGGAAAGGACTACAAGGCCCACATAGAGAGCTATGGGAGGAAGACAAGTTACGAGGCGGAGGGAGAGCTGATCATCTGACAGGAGGGCTGATCGTAGCCTGCGAGGGGGAAGTGATCAACCATCAGCGAGACACTCGCAAGCGCTCATAGACATACGATTACATAAATTTAGGTGCCAAAAGAACCGAGCAGAAGGGATAATTTGAGTACCTTCGCAAAAGCAGGTCTGTAGAGGTAGCCCCACAGCCGCCTCCCCACACCTGCAGTCGCACCCCTCGCGGGTGCGTGAATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAAGCTTTGAAGGGCGGACAAAATGGGCAAGGAATTCGGTGGGGGCCTTGCCTCTTTTGGGAGGAAATTCACCTGCATTCCCCGAGATGAGTAACACCATTTCTCATATGAAATACTCAGTAAACTGTGTGCGCAAAACGGATTCTCCAGAGAGTCTCTGAGGGTTTGAAACCCTCTTCCTACCCCACTCTATGCATCTGTCATAAGAGGGAGCAGTGAAGGGTCATAAGGTCAGTGGTAGTCCCCTGCGTACTCAATCGGGGGTGGAAATCTGCTGACAATTGAGGGAGGGATTGGGTACCTTTGCTGCCACAATGCAAGGATCACGAACTCTCATGACGACTGACGAACTACTGGAGTGGGACCAAACCCATCTCTGGCACCCCTACACCTCCACCACTCATCCCCAGCAGACCTACCCTGTCGCCTCAGCCAAGGGCTGTGTCATCACCCTTGAGGATGGCAGGGAGCTTATCGATGGGATGAGCTCTTGGTGGTGT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGTGCGTGAATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.60,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13426-12872 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793797.1 Porphyromonas sp. HMSC065F10 Scaffold853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13425 37 100.0 37 ..................................... CCAATCGATCTTGTTACAACGCATAATTCGATGCGAA 13351 37 100.0 37 ..................................... CGGACGGCTGTTTGTCTACCGAGTGGTGAGCCAAACG 13277 37 100.0 34 ..................................... AGCTCTTTAGGTAACACTTCATCTTTGAAGATTG 13206 37 100.0 41 ..................................... CTACCACCTTCCAGTGATAGAGCGTGACCACCTCCTCACGG 13128 37 100.0 35 ..................................... AGGAAATTGTATCCAGTAGTTCCTCCAATGGAATG 13056 37 100.0 35 ..................................... GGTAGAGTGGTAGAACCTTCGGGTAATCTACCTCC 12984 37 97.3 39 .................................G... TCACCTCTGCTTCTTCCTGATATTCGTTTAGCTCGCAGA 12908 37 86.5 0 .............C..................TC.GG | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 98.0 37 CTCGCAGACCATATTCCATTAAAACAAGGATTAAGAC # Left flank : AAGCGCAATACGCTCTTCTACTGATGCTTACAGGCAGTTCTCCAAGGAAAACGAGGAAGAAAAATGACCAAAAACCCAAAAATTGTAAGGTAGAGATTGCACGTTGTACAATCAATTCAAAAAACCTTTGTATATTTGCACTCAGAGGTACATGTTTTCCCTCAAAATTTTAGGGTTCTGCGGTTTTTTTGGTCGTAAAGGGCTCACATACAGATCTTCACAGATTTGACCCTCGCAGACCATATTCCATTAAAACAAGGATTAAGACCAATCCAGGAGTGTTACATCCCAGATGTCTATTATCTCGCAGACCATATTCCATTAAAACAAGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATATTCCATTAAAACAAGGATTAAGACCCGACAGGATGGGTTCGTTAGAGAGCGTCTGTGAGA # Right flank : GGCAGGTCGTCCGACCCGTCCGACTCGTCCCGCAAAAACAGGGCGTCACCTAATACCGGTAAAAAGAATTCTCTAATACCGATATTAGTGATCTCTAATACCGATATTAGAGAAATCTAATATCGGTATTAGATTTCGCCCCTATCCGCCAAGGGCAAAAGCCCTCAGCGAGAGCCTTCTGCGGGAGAGCGCTTCGAGGGGGACTATTAGACCGGAGTTGCACCCCTTGCGGGTGCCCGCTTCTTAGTCACAGGTCGAGGGGCGTCGCCCCGATGACCCGTGGAGAGGGCATCGTATACGACCTCGACCCTGCCAGGGTGTCGCACTATCAAGCCTCTCCGGGGAGTGTGACACCCTGGCGGGGTCTGTCTGGAAAGGGAATATCTGCTCGGCGACCCGCAAGGGGTCGAGGAGGAGGGGCGGGTCTTGGCACATCGGTCACTCCTTCGCGGATGACCGATGCCTATGGAGCGAGCACCCTTCGGGAGACCTTTGCATAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGACCATATTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 27929-27520 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793797.1 Porphyromonas sp. HMSC065F10 Scaffold853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 27928 37 100.0 37 ..................................... AGAGTAACTCCAAGTTCATCAGCAAGCTGTTGGATCT 27854 37 100.0 35 ..................................... CACCTGAAATAGCACCCTTAATAAGAGCAACTACA 27782 37 100.0 36 ..................................... CAGGCTCCCAATTCATCGTAGGTCTTCTTCAGACCT 27709 37 100.0 38 ..................................... TTCCAGCCTCTCCTCCAGCACAGCCATTTTCAGGATGG 27634 37 94.6 41 .....................GG.............. TAGGTCTTCACCAGCCAAGATGGCCAGAAGGCCCTCTCAAC 27556 37 83.8 0 .............C....C.............TG.GA | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 96.4 38 CTCGCAGACCATATTCCATTAAAACAAGGATTAAGAC # Left flank : GCCTGCGCTGCGCTCATCGGCTCAGGGCGTCTTCCTGATGATGACGAATGGGCTCGGCTCCACGATCGGTGCCTATGCGGCGGGCTTTGTGGTCGACCGGGTCGGCTTCCCGGAGAGCTGGTTTATCTTCGCCGGCTATGCGCTCGTCGCCGGGATCCTCTTCTGGCTCCTTTTCCACGACCGCTCGGCCGAGTGACGACACCCGGTCGAGTTCACCCTCCCACTCTGTGATCTCTATCCTCTTGATAAAGAGGGAGATCACAGGGAAAGTGGGAAAATTGTAAGGTAGAGATAGCACGTTACACAATCAATTCAAAAAACCTTTGTATATTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATATTCCATTAAAACAAGGATTAAGACCAAAGTGGCATTTATTGAATCTACTTTGATATCCTT # Right flank : ACGGGGGCAGGTTGTCCGACTTGTCCGACTTGTCCGACTTGTCCGACCTATCCCCGCAGAGCAAGATGTCACCTAATACCGAGATTAGCATTCTTTATATCAGAAAAAAGTGATATCTTAGTCGCAAGAAGAAACCGGTGGGGTGTCATCCCCACTCGGAGAAGAAACCCAAATCTATCGCCACAAGCTCCGGCAACGATCCTGATATGGACGAGGTGAATACACTACTCATGCGACTGGACACCCCTATCGAGAGATGGGAGATGCCTCTGCTCCGTGGGGCGGTCAACAGCCTGCTCTCTTGCCGGAGTACCCTCTTCCACAACCACACGACCGAGGGGCTTCGCTACAGCTATCCGCTGGTGCAGTACAAGCGTGTCGGAGGTAAGGCGGCCCTCCTCTGCATCGGACAGGGGGTGGACGCCCTCGGGGATCTCCTCAGCGTAGAGTCCCTCGACACCCACATCGGTCAGCGGCATGTGGTCCTCAGGATCGAGTCG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGACCATATTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 52579-52813 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793811.1 Porphyromonas sp. HMSC065F10 Scaffold1049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 52579 37 100.0 29 ..................................... TTGTAGACGTTGTAGAGCCGCTCCGTCTC 52645 37 100.0 29 ..................................... CTACGGCTCGCTCCTGTGCATTAACTCCT 52711 37 100.0 29 ..................................... TTTCCCTCTTTGGTATACCAAAGGTACTA 52777 37 97.3 0 C.................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GGTTGTCTCTTATTCCCTAAACTGATCAATCCACAAC # Left flank : NNNNNNNNNGAGCGCCCCGTCTCCGGCAAGCTACCCGTCGACCTCCCGCCTCTCTACAAGCAGGGCGACGGACTGACGCTCGGCAAGTAATCCTCCATATACACAAGGAGCGCCCCTGATGATCGGCCGATCATCAGGGGCGCTTCTCTATTTGTCTGATAAACGCACCATAGGACCAAAGACGTCCACACTTCCAAAGTACATCAGGCACAGGATGTAACACATCCGATGCCTGCCGTCATTCCCCGAGGTGGAGCAATGTCTTAGCAATGTCACTCACATTATCAATGACAAGCGAATTACGATGCGCTCAGTGTTGTCTCTTATTCCCTAAACTGATCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTCCCTAAACTGATCAATCCACAACATTAGGGTGTTCCACACAGAAGTATTCCG # Right flank : CGTAGTCGGTGGTGAGAAAAGGCTCCCCGCCGTTGTCTCTTATTCCCTAAACTGATCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTATTCCCTAAACTGATCAATCCACAACAATACGGGTGTAGATCGCCTCCTCCGCTCCGTTGTCTCTTATTCCCTAAACTGATCAATCCACAACATTAGCTCCGTGAGCTTGTAGCTGTCGTCAGTTGTCTCTTATTCCCTAAACTGATCAATCCACAACGGCTGCTACTCTCCTTGTCTTTGCCATAATGTTGTCTCTTATTCCCTAAACTGATCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCCCTAAACT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGTCTCTTATTCCCTAAACTGATCAATCCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 53297-53525 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793811.1 Porphyromonas sp. HMSC065F10 Scaffold1049, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 53297 31 100.0 35 ............................... AGCTCGCCCGCCACGTAGCCCCCGACATCGTTGTC 53363 31 100.0 35 ............................... ACAACGGATTTACTCATGTTCCGCAACGGGTTGTC 53429 31 100.0 35 ............................... GCCACGGACGAGAAGAGCCAACAGATGGCGTTGCC 53495 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 35 TCTTATTCCCTAAACTGATCAATCCACAACC # Left flank : ACTGATCAATCCACAACGTAGTCGGTGGTGAGAAAAGGCTCCCCGCCGTTGTCTCTTATTCCCTAAACTGATCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTATTCCCTAAACTGATCAATCCACAACAATACGGGTGTAGATCGCCTCCTCCGCTCCGTTGTCTCTTATTCCCTAAACTGATCAATCCACAACATTAGCTCCGTGAGCTTGTAGCTGTCGTCAGTTGTCTCTTATTCCCTAAACTGATCAATCCACAACGGCTGCTACTCTCCTTGTCTTTGCCATAATGTTGTCTCTTATTCCCTAAACTGATCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTATTCCCTAAACTGATCAATCCACAACCCTTTGTCCACTGCTTCTTCAGCCACAGAGGTTGTCTCTTATTCCCTAAACTGATCAATCCACAACCCCCAGCAGCATGTCACATGCTTCCTCTCGGTTGTCTCTTATTCCCTAAACTGATCAATCCACAACTTCGCGTCGCCCGCTGTCGAGCGATCGATGTTGTCTCTTATTCCCTAAACTGATCAATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAGCACTTCTCTTATTGATAAGCTCAAATGCGTAGCCCCTGGCGGATTAAGTCTTTTGTGGGTCAAGGCGACAAAA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTATTCCCTAAACTGATCAATCCACAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 70678-70977 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV793811.1 Porphyromonas sp. HMSC065F10 Scaffold1049, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 70678 36 100.0 30 .................................... GCGGGCTACAGGCGGTCAACCCCTTTACCT 70744 36 100.0 30 .................................... GATACCCTCATCTCAGTGTATGGTATGTAT 70810 36 100.0 30 .................................... AAGAGCTTATCATCATCACAAGTTCTTTAA 70876 36 100.0 30 .................................... GAGTACCAAAGCTATAAGAATAGGTCGTAA 70942 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTGGATTGATCAGTTTAGGGAATAAGAGACAAC # Left flank : GCTCGTACTCTTTGATCTGCCGGTGATGACGAAGAAGGAGCGTAAGGTGGCAACGCAATTTCGCAATCAATTGATATCAGAGGGGTATATCATGATCCAGTACTCCTGCTATCTACGCTATTGCCCGACGAGAGCTCTCCGAGATAAGTTTGAGAGCCGCCTCTCCAAGATCATCCCCGAGGAGGGCTTTGTTGTAGCCTTTACTCTTACGGATGCTCAGTATGCCGATGCTGCGTGGTACTATGGGACTACCCCGGTAAAGTCTCAGCAGATCCCGGGGCTCTTTGATGAGCTATAGCATTGTCTTGAGTCCTCTGTCATCCTTTGCAGTGACGCGTAAGGCACTGTAGGGTCTTGCATTGACTTGAGAAAGAAGTACCTTTGTGGTGGCGAGGATAAAAGATCCTCATCATCTACTACCCTTGTACTGTTCTTTTCATAGATTTATTTCCTTTGAGTAGGCTCAGATGCCACTTGTAATCGTGCTTTTGGGGAGATAG # Right flank : GATGCGCCAAGCAGCGAAGCGGCTCTACTAGTTGTGGATTGATCAGTTTAGGGAATAAGAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGATTGATCAGTTTAGGGAATAAGAGACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //