Array 1 327949-328458 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOH01000001.1 Zymomonas mobilis strain DSM 12495 Ga0314523_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 327949 28 100.0 32 ............................ ACCGCTTAAACTCCCTTGGATAATCGTCTGAA 328009 28 100.0 32 ............................ AAAACGGGGTAGTTTTACCCCGCTCCTTAAAA 328069 28 100.0 32 ............................ GTAAAAGTCTGGTCACCAACATGGTCAACCGT 328129 28 100.0 32 ............................ GCATCGAGATCATGTAACCGGTCAGCCAAATC 328189 28 100.0 33 ............................ CTGAAGGGATGGTCGGCGACAGTGGCGCGACGA 328250 28 100.0 33 ............................ ATAACAGAAAATGCAGATACGACCCCATCGCTT 328311 28 100.0 33 ............................ CCCATGATGAGATTGCGCTTAAGCAAAATAGCT 328372 28 100.0 32 ............................ ATATCCCAGCCTGATCCGGCTCCATCATTCCC 328432 27 78.6 0 .............T...T..A..-.T.C | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGATGCAGCCGGACAGGGCGGCCCTGACTATCGCATACAGCGTGAAGCTTTGAGTTCAGTCCGCCTTTCGTGCGTCCGATATGGCGGGGAAAAGCCCCTTTTTGAGCAGGGAGGCCGCTGTCCGGTGTGCTTTCAGATGTGTTGCATCGATCATCAGACGCTTCGAACGGCCTGCCTGCTCCGTCAGGGCGACGAAGATCCGGTCAAAGACACCCAGGCGGCTCCACCGGATAAACCGGTTGTATAAAGTCTTGTGCGGGCCATACGCTTTCGGGGCGTCTTTCCACTGAAGGCCGTTGCGGATCACGTAAACGATCCCGCTCAGGACACGACGGTCATCGACACGCGGCACACCATGCGCCAGTGGAAAAAACGGCTTAATCCGTTCCATCTGGTGCTCAGACAGCAAAAACACGTCACTCACAGCTTCACCTCCATCGGTAAACCTGTGAATCACAACAGCCCGCTCAACTCAAGAAATTAACAGGTCCTGAGCCTA # Right flank : CTTATTTAAGTGTTGTTCTGTTTCATGGTTGGGGGCTGTTTTATCGGAGGCTATTCTGTTCTCAAAATATGTCGCCGGTACTTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAAGATTATTTGTGGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGGGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2016800-2017193 **** Predicted by CRISPRDetect 2.4 *** >NZ_VFOH01000001.1 Zymomonas mobilis strain DSM 12495 Ga0314523_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2016800 28 100.0 32 ............................ TATTTCAGGTGTCGCAGAACGTCCGGCAGTCG 2016860 28 100.0 32 ............................ ATATTGTTCGCTTCAAATAAGCGGATAGGTAA 2016920 28 100.0 33 ............................ ATTTTACAGATTGATGTGAAGTTAAACTTGCAA 2016981 28 100.0 33 ............................ TTTAATCCTATGCCGACCGGTCCTACACCAAGA 2017042 28 100.0 32 ............................ AGCGACAGGCTACCGGCCACCAGCGACAGGCT 2017102 28 100.0 33 ............................ TGACCACGGAAGACTTGGCGCGTGGATAAATCT 2017163 28 89.3 0 ............G.............TT | GTT [2017182] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGGATTAGACACCGCCGTATATTTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCGGCATGGCTGCCTTTGTAAGCTGTTTTAACCGCGGATAATGCGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCCCATCGCTGAAGATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGATTCTTGCGGGATCAAATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : TTTATTGCATTGGGGTGGTTTTAAAGAGGGCATAACGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTATCTTTTATTGGGGTTTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTGCGGCGTTTTTCGCCGAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACAATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGAGTGACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGAGCCGTTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATAGGCATGGCGACATAATAGGCCATAGAGGCACCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //