Array 1 80878-82251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACYA010000002.1 Persephonella atlantica strain MO1340 Psp_MO1340_000000000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 80878 30 100.0 37 .............................. AATTCCAGCTGTTTATTTTCTTTATCAAAAATAATTA 80945 30 100.0 37 .............................. TAAATCTTTTTAAATGATTGTTTGATGTGAAAAAGTT 81012 30 100.0 37 .............................. CATTTTCTGTCCCAGATAAACCTGTATTTGTTAATGC 81079 30 100.0 35 .............................. AGACAATTAAAAGAAAATATTAAAGATGTAGATGC 81144 30 100.0 41 .............................. TAACTATCATTCAAACTCTGATGACGCTATACATTTATATG 81215 30 100.0 37 .............................. ACAGTGTAAGAAAAATTAAGGGGATACCAAAAAACTC 81282 30 100.0 36 .............................. CCTCCATTCTCCGTATTCTTTCAATAACTTTATTAC 81348 30 100.0 36 .............................. ACAGAAGATGAGTTTGTTCCAGTTATAAGACCAGCT 81414 30 100.0 36 .............................. AAAATATTAAAGTAATAGATTGTATAATACATAACT 81480 30 100.0 38 .............................. TCGTGGAATAGTCCACGACAGACAGTATTTTCTACTAC 81548 30 100.0 36 .............................. AATAAACAGATTTGGGATAAATGAAGAGTTTGAGCC 81614 30 100.0 40 .............................. AAAATGGCTCTGTTTTGTTTCCTTCTCCTTCTTTTTCTAT 81684 30 100.0 36 .............................. CTGGGGAGAGGTTGCACTCTCCCCAAATGGGAGACC 81750 30 100.0 38 .............................. TAAAGGAGGGGGAGGAGACAGTCGTCACTATAAACCTC 81818 30 100.0 39 .............................. TAACTACAAGACAATACTGTTAGCTATAGCTCGTGTTGA 81887 30 100.0 37 .............................. GGTTTACAGGCAATTGAGTCCGAATTTGCAAGAGCTG 81954 30 100.0 40 .............................. GCTTATCCCTCCAGAATGGTGAAATGTCTAATGATTTTAG 82024 30 100.0 36 .............................. TTTGCTCATAAATGTATGACATTTCCTACCTATTGT 82090 30 100.0 37 .............................. AAGTCTCGTAGATGTGGTTCTATGTTTTCCTGAAACC 82157 30 100.0 35 .............................. TAGGGAACTGAGGCATTTTTGGAAACCTGAATTTT 82222 30 90.0 0 ..........................GG.T | ========== ====== ====== ====== ============================== ========================================= ================== 21 30 99.5 37 GTTTTTAGCGTGCCTATGAGGAATTGAAAC # Left flank : CCTTCTTTCAGACCCAGATAAAAAGGTTTTAGAAGCATATGACGCATATGGTGAAAAAAAGATGTATGGCAAAGTAACAAAAGGAGTTATCAGGTCAACATACATTATATCTCCAGATGGAACTATTGTAAAAAAATGGAAGAATGTTAAGGCAAAAGGACACGTGGCCAAAGTTGTTGAAGAGTTAGAGAAACTGACACAAAGTTAACTCAGATTCAGTCTTAACTTTGAATTTTTTCTTTGGTAGATTAGAATTATCAGGGGTTTGTCAACCCCTGAAATTTGGTAATTTTTGAGACTCAGTTTCACAGGCCAAAACAGCAAAAATTTGACTTTCAGCTTAGTGTATCAACGATTTGTCAATCTCCAGGGATTTTTACAGGATTGGAGGTTGACAGAAAATTAACTTCATTTGACAGCTATATGGTTTTTTTGTATATTTAAACTCAGCAAGTAATAACAACGGTTTCTTGACAACAGAATAGGAAGCGGTTTTAAGG # Right flank : TATGTCTGTTAAATTAAGGTAAACCAAAATGTATACAGTGGAACAATTAAAAAAGCTTGTGAAAAATTACGGGATAGGTTTAAACTACTTTGATGAAGATGACCCAGAAGCCGATTTGTTGTATATATACAGGAAAGAATTAGAAGAAAATAAAGCCTTATTATCCCCTGAAGATTTAGACCTCCTATGTCAGTATGACCTTAAGGCCGTAGAACTTTATGAAAAATATAAAAACTATGACACAGAAGCAGTAGACTGGCTAAAAGATACAGTCCAGATAGCAAAAGCAAATCTAAAAAACAAATCAAATTACAGAAAGTATCCTTAATCTACTTATAATCTCCTCTGAGTTATTCTATGAGAGTTCAATGTTATCTCTTCCTATCTGTCCCAAAGCACCTTAAATTAATTACAAATTACAAAAATAGGAAAGTTTAATGTTTTTCCTGAGCAAGAATGGTTATTTTAAAGTCAAAAAAGAAGAAGTTTCAGAGGATTTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTGCCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 195800-197168 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACYA010000002.1 Persephonella atlantica strain MO1340 Psp_MO1340_000000000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 195800 35 100.0 39 ................................... ACGAGACGAGGCAGGTTTCTTCCGAAAGAGAACTTTATT 195874 35 100.0 40 ................................... TTTATTTTCTCCAAGATTCTCTCTACTTCATTTTTTGTTC 195949 35 100.0 41 ................................... GCGAGGATTTCTCCAGATTTTGAGATCCCAAAGCTAAAAAA 196025 35 100.0 36 ................................... ATACGCATAATCATAGCAGTGAATTACCCAAGTCTT 196096 35 100.0 37 ................................... TCAACAACATTATCAGAAATAGATTTAGCTTCTTTAA 196168 35 100.0 40 ................................... TGCCGAGGAGTTCTATTTCTTGCTTCCGAAGGTCTATCCT 196243 35 100.0 40 ................................... CTCTCGCAGGTCTACTTTGAACAGGTAGACCTTATTAGCC 196318 35 100.0 34 ................................... TCGTAAAATCCATTGTTTCCAAGAAAATCAATAA 196387 35 100.0 43 ................................... TCTAATTCAAATCCAACGCTTTTTATAGCGTTGGATTTTCTTT 196465 35 100.0 34 ................................... CAGACACCCCGAAGCTGTTATCCTCTTCTTCTAC 196534 35 100.0 40 ................................... GGTGTATTACCTCCTCTCTCTTCAATACTTTCATACCTAC 196609 35 100.0 39 ................................... GTCCACTGGACCGACACCCCGTAGTCTTCCTGCTCCTCC 196683 35 100.0 43 ................................... AATACGGGGGTTTGGTCTTTTTCTAAGATTGCAATGGTGTACT 196761 35 97.1 37 ...................T............... AGATTTTCCTTCTGTCGTCTGTCGCTCACAAGTTATC 196833 35 97.1 37 ...................T............... TCTGCAAATCTTAATAAATGATTATTAGATGTAAAAA 196905 35 97.1 45 ...................T............... TCTGCTATTATTAGGTTTCCTATTGATATAAATGGAAACTCAATT 196985 35 100.0 41 ................................... CATATACTTTTTCTTATTAGGAACAGAACTTGACTTAAATT 197061 35 97.1 38 ...................T............... TTTTCCATCGGACTCCCATATTCCTTCTGCAATTTGGT 197134 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ============================================= ================== 19 35 99.2 39 GTTGCACTAACCCGATTTACTGAGGGTATTGCGAC # Left flank : TAAAAAAACTAAATAATGATTTTTTTTCATATGATAAAAAATTAGAAGTTTTAATTAATAAGGAGCTGACAGATTTAAAGGATAAACTTTCCAGCCTTGAAAGTAAAACATACCAAGTTTTAAATACAATAATTCACAACAAAGCTTTTAATGAAATTGACCAGAGAAATTTTCTTGCCCATGCAGGTCTGGAATATAACAGTATTGAGGTAAAGAAAGAAGATGAAGACATTTTGATTAAATACAGAGAAAATCTATTAAATACAGTTGTTCAGTTTTGTCAGACAGGCTTGATTTAAAACCCTGTACAAAAATCCAATATGATATAAATCATAAAACTGTCGGAAAACCGCATAAAATCTAAACTTTGTAATTGAGATAGTATTGAGATGAGGATATTGACAAAATTCAGAAAAATCAGTATTTTAATGGTAGGTCTGTACAGAATTAAGGCTATCTGGAAAATGAATACGTTGATACTCAACGATTAGCGGGGGACT # Right flank : TATTAATGCATAAAAGTCTCCCTAAGAGTATGTAATTTTAAGCCGTATTACACTCACCCGACTTAACAAAGGTGTTAGGAATAATTAAAACATATCAATTTTTTAGGCTGTTCTGATACTTTCACACTACACATCTTTCTAAGGATAAAAGTTTTGCTTTATGGTAAAATTTCCCATAAGGCACATCTTTATTAAGAGATAAAAATTTGTATAGTAGCTTATGGAGAGCTGTTATGAAAGTCATAGTAGAAGTTCCTGATGAGCTAAAATTAAATGAAAAAGAAGTAAAAACGGCAGCTTTAGTTAAATTATATGAACTTGGGAAAATATCCTCTGGCAAAGCTGCAAAACTTTTGGGTATTTCCCGTATTGAGTTTTTAAATTTGCTTGGTAAATATAAGGTTCAGATGGAACCAGGTACAGAAAAAGAACTCTTAGAAGATATAGAGAATGCCTAAAGTTGTATCAAATACAACTCCAATCTTATCCTTTATTAAATT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTAACCCGATTTACTGAGGGTATTGCGAC # Alternate repeat : GTTGCACTAACCCGATTTATTGAGGGTATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 201824-202460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACYA010000002.1 Persephonella atlantica strain MO1340 Psp_MO1340_000000000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 201824 35 100.0 40 ................................... GTCAGCAGGCTTTTCTTCTCTAAGTTTCCAACTAAAGCCT 201899 35 100.0 40 ................................... GTAAAACCTATAGCATATTCAACTTTATCATTAAAATAAG 201974 35 100.0 43 ................................... GATATGGCTCATCATTTTTTGGAATTTCCTCATACACCCATAA 202052 35 100.0 40 ................................... ATGAGATAGGAATTCTAATTCAAAGCCAATTGTCTGGAGC 202127 35 100.0 40 ................................... GTCCTGAGAAAGGAACCTTTCCCTTTCCTCGCCAAGGATG 202202 35 100.0 43 ................................... TTAAAATATGGACTGTGTAGATTTGCATTTACATAACTATAAA 202280 35 100.0 38 ................................... TCGTCAGCTGACCATTACAGCCAGCTGAGTGTTGGTTT 202353 35 100.0 38 ................................... ATTCGTTACCATCTCATATGTAACGCTTGAGTCCCATT 202426 34 80.0 0 ....C............A.-.A........A.TG. | T [202456] ========== ====== ====== ====== =================================== =========================================== ================== 9 35 97.8 40 GTTGTACTAACCCGATTTACTGAGGGTATTGCGAC # Left flank : GTAATATAACATCTTGTGGTTTTCCTTGTCTGTCTAAATATACAACATTAACAGAGTTTTTTGACAGCAGTGATTTTATCCATATAGGAAGATAAAAGATGGTAAATACATTTTCTATTTCATCTAAATTTAAATTTTTGATGTTGTACTCTGTTCCCAGTATTATGTGGCTGTCTTCTATCAGAAAGACATCTGGATAATCTTTTATTATAAATAGATTCTTTTTGGTTAAGTAACTTCTCAAAGCCAACCCCATAACTGTCTTTTTATACTTATAAACTGAATTTTTCAAAACTTCTGACTCCTGTCAAAAATCCAATATGATATAAATCATAAAAACTCGGGAAAACCGCATAAAATCTAAATTCTATAATTGAGACAGTGTTGAGATGAGGATATTGACAAAATTCAGAAAAATCAGTATTTTAATGGTAAGTCTGTACAGAATTAAGGCTATCTGGAAAATGAATACGTTGATACTCAACGATTAGCGGGGGACT # Right flank : CGTTAATGTTATAATTTTTTGTATGAAAGAGCTGTTAAGGGAGCTTTATTTGAGCTCTGATTTTCATTCTTTCAAAGAGGGGAATTTTTTAGTTATTCGGGTCATTGACTTTTATAAAAAGTCAGGTTTTGTCTTAACTTCAAGAATCAAAAATGCTTCTCAAAACAAATCAAGACCAATCATCATAACCGAAGTTACCGATGAAAAAATAAGATTCGTAGCAACGACAAAGAGCCCAAAACAACACGCACCTAAAATAAATGTAGAAAAATGTGTTATAGAGAAAGTTCCTGAAGAATGTTTCGGCTTACCTCTAAACAGGAAATACTCGTGGCTTTTTGTCAAGAAAACACAGAAAACAAAAAGATGGAGAGTTTATTACACAGTTGACGTATACACACTAAAACAGATGTTTGCAGAAGGAACACTAAAAAAATGTGGAAACTGCCCACAGTCTGTAATTTTTGAGATAGAGATAAAGATAAACGACATGGGAGAGG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACTAACCCGATTTACTGAGGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 626740-624918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACYA010000002.1 Persephonella atlantica strain MO1340 Psp_MO1340_000000000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 626739 29 100.0 37 ............................. CTTACATTTAGAGCAGGTGAAGAACTGAACACATACA 626673 29 100.0 38 ............................. TTATTTATAATTCTTTTCTTAAATTCATAAGGAATTCC 626606 29 100.0 35 ............................. TCGATAGTAAATTCTGAATATGAAAAATCATCATA 626542 29 100.0 40 ............................. ATGGAGAAGTTATATAACTATAACCAAAATAGATAGAAAA 626473 29 100.0 37 ............................. AAAGAAGGCTCAAGTTTTATCTGTGCTTGATGTTGCT 626407 29 100.0 40 ............................. TTTGTAAGGTTGATAAAAGACTTAAGGGATAAAAAGATAC 626338 29 100.0 37 ............................. TCAGAAAAATGATTTCTTACGCGAAGATGTTAGACTT 626272 29 100.0 38 ............................. TTTGCAAACTTCAAAACTCTTGCGTCATCTTTTTCTCT 626205 29 100.0 36 ............................. TTTTGTCAAATTGTCAATACTTTTTGTTAAAAAAAT 626140 29 100.0 37 ............................. AACCTCCAGGAGGAGGAACTCCTCCCCCTGGAAGTTT 626074 29 100.0 38 ............................. AAGCTGTGGCTGAAGTCTGTGATGTCAGATTTTAAATG 626007 29 100.0 38 ............................. CGAATGTATGATATTCGTGACTATGATTTTGTCTTACT 625940 29 100.0 36 ............................. CCTTCAAAGTTTATTGTTACTCATAAATTTATGACA 625875 29 100.0 37 ............................. GGGCATTGATACTCAATGCCCAGAGAAGGGTTCAGGA 625809 29 100.0 37 ............................. TACGATAAGGGCTTATCTGCCTAAGCAGGTTAGAGAG 625743 29 100.0 38 ............................. GAAGGACTACCTCTTGCTCCCTTAGGTCTATCCTGAAT 625676 29 100.0 36 ............................. TTTTGAATAACTGCAATTTTTTTATTTTCTGTAAAA 625611 29 100.0 38 ............................. AGAACTCTCCAAACTCCAGCCCCAGTCTTCACATAAAG 625544 29 100.0 37 ............................. CCTGAACAATTCAAAAGCTATCATAATTCTATGGCAT 625478 29 100.0 36 ............................. CTTTGTCTTGTTTTGAGTATCACGTTTCTGTTGTGT 625413 29 100.0 39 ............................. TGAGGTGAGGAGTATAAAAAACGGTAAAAAGCTGAGGGA 625345 29 100.0 37 ............................. GTTATATTTGACTTAAATACATCAGGAGGTGATGAAA 625279 29 96.6 38 .......G..................... GATAAAAAAATACTAATCGTAAGCTTTGCTAATTCTCT 625212 29 96.6 36 .......G..................... AAATCTATAAGATTCATTTATTCTTGTTTCACCTGT 625147 29 96.6 41 .......G..................... TTCAAAATAATTGTTTCTTTCTTAAAGTCTGAGTTCTCAGA 625077 29 96.6 36 .......G..................... CTCTTTTTTTCTACATAACAACACTGTAAAAACCTT 625012 29 93.1 37 .......G....................C AGATACTACGCAAGTAAAGAAATAGATAAAGCTGTTG 624946 29 82.8 0 ...............T...G...G...GA | ========== ====== ====== ====== ============================= ========================================= ================== 28 29 98.7 37 GTTTTGTCTGAACATAGTGAGATATAAAG # Left flank : CAGATGACAGAAGATTAAATAAAGTTAGAAAAGTGTTAAAGAGATATCTTTACTGGAGTCAGCTTTCCTGCTTTGAGGGGATTATAACTGAAGGAAAACTTGCCCAGTGTATGGCAGAAATAGATAAAATAATAGATAAAAAAGAAGACAGCATTTATGTTTATCAGGTAAAAAATCCAAAGAACATAAAGAAAAAAGTTTTAGGAATAGAAAAAAGTTATATAGATAATTTTTTATAATTGATAGCAGGTATTATTCAGTTTTGTTCTCTTAAGGTTACCAATTTGCTTCACAAAAGTGCATTTTCAACAGAAAATATATTTCTGTGTAAGATGGCTGAAATTAATTACTTTAGAAGATATAATAGAAAATATATTTGCATTAATAAAGGTTTACTGCAATTCGCATTGCTTAGAGAAGGGTTATAAAATTATTAAAAACCAATCAGAGCATTGATATTACTTGGCAACAGAATAAGGTTTATTTTTAATAATAGCCGG # Right flank : AGATTAGATAAAGGTTATTTATGGGATAATAACTTTATCTTACAGGTGAAAGTCTTAGGCTGATAATTTTTTCATTCTGTATGATACTTTTACAGCTTCTATGAAAGATGAAGGGTCTGCTTTATTTTTCCCTGCTATATCAAATCCTGTTCCGTGGTCTGGAGACGTTCTGATAAAAGGCAGACCAAGTGTTATGTTAACGGCTTTTTTGAAGCACAGCATCTTCAGAGGTATCAGTCCCTGGTCGTGATACATGGCAAAGTATGCATCATATTTTTTGTAATCTACAAATGCAGTGTCAGGGGACAAACAGCCGTAGAGGTTAAACCCTTCTCTTTTTAATGTATCTACAGCAGGTTGAATAAACTCTATCTCTTCCCTTCCGATATTTCCTCCGTCTCCGCTGTGGGGATTAAGACCTAAAACGGCGATTTTTGGATTTTTTATTTTGAACTTTTCTTCTAACTCCTTTGTTAACAGTTTTATCTGCTTTTTAATGT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTCTGAACATAGTGAGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 518306-517620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACYA010000001.1 Persephonella atlantica strain MO1340 Psp_MO1340_000000000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================================================================================================================================================== ================== 518305 30 86.7 230 A..........G.........G.......G ATTTCTATAGGATTAGAAAGGAAGAAATCTCAATTAAATTCAAAAACCAATATAAAAAAGTCTTATAGAAAAGAAATATCAATGATTTGTCGATGTCCTGGGTTTTTTGCAGGATTGGAGGTTGACAGAAAATTAACTTCATTTGACAGGATTTATAGTTTTTTGTATATTTAAAATCAGCTAAGTTTTACAACGGTTTCTTGACAACAGAATAGGAAGTTAATTTTATG 518045 30 96.7 35 ...........G.................. CACGACAAAGCACCGATAGTTATTATGGTTAAAGC 517980 30 100.0 37 .............................. TTTCCGTGGGGCTTGCGAATATACACGGAAAGCACCC 517913 30 100.0 36 .............................. GATACATTCTCTCCAGAAGGGTAGATAACAACCTCT 517847 30 100.0 35 .............................. ATGCTATTTATATCCTGTATTTGAGCCTGTTCAAA 517782 30 100.0 37 .............................. TGTAAAAAGTGTTTTTTGCCTTCTTATGTTTTCATAG 517715 30 96.7 36 .................A............ TACAAAGACATGAGGTCTCGCAGAGTTGCAAAAATG 517649 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================================================================================================================================================================================================================== ================== 8 30 97.5 64 GTTTTTAGCGTACCTATGAGGAATTGAAAC # Left flank : AAAATGAAGTTTTAGAGCTTATAAATCAGTATTTTAAAGCACTGTTAGAGAGAAAATCTATGGCAGAAAGCTATAAACTCCTTGAATATTTGTACTCTTTAAAATTTTCTGGAGAAAGAGAACCAGGACAGATTTTATCTATAGCTGACTTTAAACTAATAGAAGAAGAAGCTAATAAAACTGATGTTTTTATCCAGATAGATAAAGAAGCGATTGAAGTGTGGGAAGAGTTTAAGAAAATTATGCAGATAAAAGATATATTTGATAGAAAAAAGGCTTTTGACAACATGAAATCTCAGTTTTACAGCTATATAATCTCTGTTCCTATTAAAGACAATACTCCACCTGTAGAAAACGGCTTTTATTACGTTCCAATTGAGAATTTAGAAGATTATTATGATTTGGAAACAGGGTTTAAAGTAAAAAGTGAGTTTTTTATGTTTTAAACAGGGGAAGATTATCTTCCCATTAGCAGGATTAATAGGATAAGAAGGTTAGTA # Right flank : TATACAAAAAAGCCTCACCGACACCGAGGGCAGGTCACTGCAAGCGAAAAACTTGCAAATCGGCGTCAGAAGGCCTATAATTATAATCATATATAGGAAACCAAAAGATAGTCCCTTTGGGCGGAAGGAACTATCTCTGGCTGAGTCCCCTTAATTGCCTACTGAAATTTTTAGGGTCACTCTTAGAGTGACCCCTTTCCATTTCAGGAAGGCTTTCAGGGATATGCTCATTTCAGCACCCTCCATAGACTGAGTTTTTAGCGTGCCTATGAGGAATTGAAATTGGTATATAATCATTTGCCATGAGAATTTTTAAAACTTTTTTAGCTTTAGGACTGTCTTTATTGTTTACTCCTCTGTTTTTGTTTAGTGTTGGGGTTGTTTTGGTTTTAATCTGGTATGCTGTTAGCGTTATTTTACCTTTTGTTATTTCTTTTTTACTTCTTGGATTTTGGTTTTTAATTTTCACTGGATTTGTTCTTACCGTTAACGAAAATCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 534569-536868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACYA010000001.1 Persephonella atlantica strain MO1340 Psp_MO1340_000000000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 534569 30 100.0 38 .............................. GGAATAGATGCAAAGTCTGTTGTAAATCCTTTAGGAAC 534637 30 100.0 37 .............................. CTATAACTGACTTAACAGGGGCTGGTCTGCCAGCCCC 534704 30 100.0 36 .............................. TCCTGCCATTGTGGGTCATCTGTAAGCTGGTTAGCA 534770 30 100.0 35 .............................. TATTTCCATTACCATCATCAAAAGCAGTATAATTA 534835 30 100.0 35 .............................. TTCTTCTTTTCCTGAGTTCAACAGCTCTTTTTGAT 534900 30 100.0 40 .............................. TGTTTACGATAGTGTCATACCTGTCAAGCTCTATGTCTCC 534970 30 100.0 36 .............................. ACTTCTGCTGGCAATGGAACTGATGACCAGACAAGA 535036 30 100.0 39 .............................. TCTCTAACTTATCCCTTTGGGAACACTCGCTACACATTA 535105 30 100.0 37 .............................. TAGTCGTTAAATTTAATGCTAAAAACGAAGTAGAAAA 535172 30 100.0 37 .............................. ACTGTTCCTGAAAATGTGATAGAAGTTTCTTTTGCCT 535239 30 100.0 38 .............................. AATTCTCTTGTAGGGACATCAAGGTCTCTTTTACATGA 535307 30 100.0 36 .............................. TTTTTGATTTTCTCATTTTTCCACCTCCAATAATTT 535373 30 100.0 36 .............................. GAATAGATTAGAAGAACTCCAGACACATTCAAGAAG 535439 30 100.0 35 .............................. TGTAATTTTTCTCAATATCCAACACTGTTTTCTTA 535504 30 100.0 38 .............................. ATGTAAAATAATCATATACATCAATATAAATATTATCT 535572 30 100.0 36 .............................. AAAAAATAAATAAATATACCATCAGATTTTGAAAGT 535638 30 100.0 38 .............................. CTGTGCTTTCTTGAAATGTATCAAACGCTTGTATTCCT 535706 30 100.0 36 .............................. GAATAGATTAGAAGAACTCCAGACACATTCAAGAAG 535772 30 100.0 37 .............................. CTTTTGGGCTCTGGCACCGATAAGGTGCCATCGCCCC 535839 30 100.0 35 .............................. TTTTTTCCGGGTCAGCGTCAGTTTTGTATTTTTCA 535904 30 100.0 38 .............................. CTGTGCTTTCTTGAAATGTATCAAACGCTTGTATTCCT 535972 30 100.0 38 .............................. TGAGAGGAGTAACATTGAGGTTGAGGATTGGAAATACC 536040 30 100.0 35 .............................. AAATATATTTTGCTATAGCGTATGCAACTGAACTA 536105 30 100.0 37 .............................. TGTTCTTATGAGCCTTGCCATTTCTATCTCATAGCCG 536172 30 100.0 36 .............................. TGGAAACATTCCATCAGGCAACAGAAGACAGATTGG 536238 30 100.0 35 .............................. GGTCTTGACTTGAATCAGGCAGTTCAAGAATCACG 536303 30 100.0 39 .............................. GAAATTTAGCTATACCTGTAGATAAAGAAAGTTTTAAAA 536372 30 100.0 38 .............................. GGACTTCAGCAGGTAGCTCAGTCTCGAGATATAGCCAC 536440 30 96.7 38 .................G............ ACCTTTAAGCCTTTTTCGTGAATGTATCTGAATACAAC 536508 30 96.7 36 .................G............ ATATTCCATTTGTTGCCGGAGGGTCAATTACTATAA 536574 30 93.3 37 ...........G.....G............ ATGAGATATTTAAATCTCACCCAAGGCTTAAAAGACT 536641 30 96.7 36 .................G............ CTCCTCCTTAAAAGTATTTGATTCAATTTCTTTCTT 536707 30 96.7 35 .................G............ AATTTTTTGATGCTTTTGTAATTGATTTATTGCAA 536772 30 100.0 37 .............................. TGTTTTTCTCTTTTTTTAAAAGTTCGCTTATTTTGTC 536839 30 86.7 0 .................G.........GGA | ========== ====== ====== ====== ============================== ======================================== ================== 35 30 99.1 37 GTTTTTAGCGTACCTATAAGGAATTGAAAC # Left flank : GTTGTAAAAGAATCCTATATCGTGCAGAAATTTGGATAAATAAGGTGGGAGGCTTTTGTAAAGCATACCTTGAACTGTTGGTGAATGGTGCAAAGGTAAGGATATATACTCCCTTTCAGAAGAAAGTTTTATTGACAGTCTCATTTTCCCCCTCGCTGAATTTATCATAATAAATATAAATGCGTGATGTCAAATATTTTGTAATTGAGACAAAATAGAAGAATTAAGTGTACCTTTCCATAAAAAAACATTGATTGTCAATGGTTTGTCGATGTCTAAAAAACAGCTCTTTTTGAGACTCATTTTCACAGGTTAAAACGGCAAAAATTAGGATTTTAGCCTTATATATCAACGATTTGTCAATCTCCAGGGTTTTTTGCAGGATTGTGGGTTGACAGAAAATTAACTTCATTTGACAGGATTTATAGTTTTTTGTATATTTAAAATCAGCTAAGTTTTACAACGGTTTCTTGACAACAGAATAGGAAGTTAATTTTATG # Right flank : AATGGAATTATCCTTACTTATTAATCTTCTAATATTTCTGGGAGTGATTTTAAAGTTTCTGTGTCTAACTTTTTCCGTATTTCTCCAAACTCTATGATTATCTGTATGTTTTCTTTTTTCAAGCAGTCTTCTGATGTCTCTTCTTTTAGATACTCTTCATACAAAAAGAAGTCTCCTACTTTGAGTGATAGAAGAGATATAATCATATTTGCATCTTTACACTGTGACAGCTGAAGCCATTTTACTGCTTCTGTGTAATGTCTTTCTGTAATGTGTTTGAGTGCTATAAAGAAATTTTTCAGGTCAGTGTCTTCTGTCTGGTCTATGATTTGCTGTATATCTGCAGTTTTTAGAATTTTTCCGTTTTTTTGCAGAAATATTTTGAGTTTTTTCAGTTTTTCTGGCTGTATCATTTCTTTTTTTCAGATAGATTTTTTAAAAAATTAATCTGATGAAATGTATGGGGTTCAAATCCTTTTGCCATTACTCTGTTTAGAGCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 751617-750530 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACYA010000001.1 Persephonella atlantica strain MO1340 Psp_MO1340_000000000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 751616 35 100.0 43 ................................... ACAAAATGTCTGATACTTGTTTTAGCTGGTTTTTCAATGTTGA 751538 35 100.0 39 ................................... TGGGATGAGGATTGCCCTCCCAGTGGGGGGCTCATCTAT 751464 35 100.0 39 ................................... CCCCCTGGAAGTTTATATTAAACCCTTCTGGGAGGTGCT 751390 35 100.0 41 ................................... AGGATTTCTACGCTCCCCTCATCCACAGGGATTAGTATCGC 751314 35 100.0 42 ................................... GTGGGGGGCTCATCTATTGCCCCCCACGGTACTTCCCAAACC 751237 35 100.0 38 ................................... ATCCGTGGTAAACGGAACTGTAAGGTAATTCGTAAGAT 751164 35 100.0 46 ................................... CAGAACATGATACTTCTGTCCCCTTCAAGCTCCCTAAGGAGCTGAA 751083 35 100.0 39 ................................... GTCCACTGGACCGACACCCCATGGTCCTCCTTTTCCTCA 751009 35 100.0 39 ................................... TGAGGTTGGAGTATGCATCTCTTGCTACTTCTCTTGCTA 750935 35 100.0 35 ................................... AGGAAAGTCTTTCTCGTTGATAATAAGAACAAGCT 750865 35 100.0 38 ................................... CCTGTGAATTCAATCCATCTTACTTTAAACTTCCTCAT 750792 35 100.0 37 ................................... ATCTTACTTACCTCCTTTTGGTTTTTGTTTTTACTTG 750720 35 100.0 40 ................................... TCGTATATATACTTAGTGTAATCGACTGGGGTTAATTTCC 750645 35 100.0 46 ................................... TTTTCTAACAAATATATAGCTTCATCGTAAGAGATTCCCTTGTCAT 750564 34 91.4 0 .........................A...-....T | A [750532] ========== ====== ====== ====== =================================== ============================================== ================== 15 35 99.4 40 GTTGCACTAACCCGATTTACTGAGGGTATTGCGAC # Left flank : TACCATATTTATCGCATACCTTTTTAATCACCGTAGCTTCCTGATACATCTGTCTGGAGTTTTTGTTTTTTGCTCTGTACTGGATGACAGTTGCACCTCCTGATATTGCCTGTTCAACTGCTTCAGCAAGATTTTCAGGTTTTATTAAGTTCTCATCTGTAATGGCATACAAAGATAAATCTATCTGCTTCATAATTTCGCAAAAATATCAGATTTTTATACAAATATACAGCAGGTTCAAAACGAAATCAAAAGACCTGCCAGTAAGATGCACAAAAATAAAACCTTTCGTACTGCTGAATTCTGTACAAAAATCCAATATGATATAAATCATAAAAACCTGGGAAAACCGCATAAAATCTAAATTCTATAATTGAGACAGTGTTGAGACAGAGGTGTTGACAAAATTCAGAAAAATCAGTATTTTAATGGTAGGTCTGTACAGAATTAAGGCTATCTGGAAAATGAATATGTTGATACTCAACGATTAGCGGGGAACT # Right flank : TCTATCTAACTTATCCAAAACAAATCTATGTGCCATCATCAAACTATTTCAATCAGTATATAGCTTCACAGTAATTGATTTTGAAAAAATTATCAGTTATTCTTATAAAACGGTGTTTGAAAACTGTCTGAGGTGGAGATATGACTGGATATTTTGCTCTGCTGATATTTGGAATTACAGCGTTTATTGTTGGCGCAGCACTTCTTATAATTAACAGACTTGTAGCACCTAAAATTCCTGACCCAATGGAAGGATATACATACGAGTGTGGTGTTCCCCTTTACGATAAGACTTCTCACCTGTCTTTAGAGCAGAAGTACTATCTCCTTGGACTGCTTCTTGTTCTGTTTGACCTTGAGGCAGCATTTGTTCTTCCGTGGGGTGCAATATTTAAAGAAGTTGCCCAGATTAATCCTGCTTTTATCTTTACTGAGATGTTTATATTCCTGTTTATTCTTATACTTGGATACATATATGCATGGAAGAAAGGAGCGCTGAGA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTAACCCGATTTACTGAGGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //