Array 1 24273-26461 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOY01000264.1 Vibrio cholerae strain A12JL36W49 NODE_354_length_71228_cov_16.966475, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24273 28 100.0 32 ............................ AAACACGCACCACAGCCTTGAACGCGATCAAG 24333 28 100.0 32 ............................ TTCAGCCCAACTCGCGGTCAATGATGGCTCTT 24393 28 100.0 32 ............................ AACATGGTTATTGTTGCTTGTGACTCTGTATT 24453 28 100.0 32 ............................ GCAAGCGTTTCAACATGCAAGATTGGTAAAAG 24513 28 100.0 32 ............................ AGAAAGCCGATTCAGCATTTCGCAGCTCGCCC 24573 28 100.0 32 ............................ AAGCCTTTGATCTGAAATCCCCATTTTTGAGC 24633 28 100.0 32 ............................ AATGTCCGGCGATGTGGTTGCTCATATGTCAC 24693 28 100.0 32 ............................ ATAACGGTTCCTTAAATCAGTTCGCGGTTTTG 24753 28 100.0 32 ............................ GTTCCTGATACCTCTTTATTGATGAGGGCGCC 24813 28 100.0 32 ............................ AGCGCAAGTCAGGAGGTCAAAGTCAACACCCA 24873 28 100.0 32 ............................ CGTTTTTCGGTGCGGCGCAAAGGTTGGCTTCG 24933 28 100.0 32 ............................ AAAAGAGTTTGATGAGTTTGATGAAATCCCAG 24993 28 100.0 32 ............................ GACATGGTCATCATCCCGGCGAACGACGACAC 25053 28 100.0 32 ............................ TGCTGCATGTACATTCGGCACAACGGAAATGT 25113 28 100.0 32 ............................ ATATCCACCTCGAAACCGTTAAAGGTCATTCC 25173 28 100.0 32 ............................ TATCAAGAGTTTATCGATCGCGGTTACTTCAC 25233 28 100.0 32 ............................ TTTTCAAGAAACGATTCGGCATACTCTCCGAA 25293 28 100.0 32 ............................ ATAAAACACCCAGCGCCAAAACCAATTCAATT 25353 28 100.0 33 ............................ AAGACGTCAAAGCTTGAAGACTTGCCGGAAGAT 25414 28 100.0 32 ............................ TTCAGAATCGAAGATCGCAATTTCTCGAATGG 25474 28 100.0 32 ............................ TAACTCGACAAAGCAGCTGGTCGTTAAGTCAT 25534 28 100.0 32 ............................ GTAACGCCGGATTTCGTGTGAATCTCAGCTCT 25594 28 100.0 32 ............................ AATCGCCGACCGCAGAGCAGCGCGCACTAGGC 25654 28 100.0 32 ............................ TTGATGCGTTGTTCCCGCCTTTGTGTGCTGGG 25714 28 100.0 32 ............................ GTAATCGGTTTAAGGGGCTTGACTGGTCTTAA 25774 28 100.0 32 ............................ TTGCCGCGAACCTACGCCCTGACATCATCATC 25834 28 100.0 32 ............................ ACCACTTACCGCCGTTCATTGTTTTAACGCGC 25894 28 100.0 32 ............................ TGCAGTCGTTTGATGTTGGCTTCTGAGACCAA 25954 28 100.0 32 ............................ GATCTCGATGTGAATCAATCAACCAGCTTTAC 26014 28 100.0 32 ............................ TAATGATCCTACTAGCCCACTACCCCCAATTG 26074 28 96.4 32 ...........T................ GAGAGCGCAGCGAGAGCAATCGACAATGCGAT 26134 28 96.4 32 ...........T................ ATAAAACGTGTCACCAAACTCATTCATCTGCT 26194 28 96.4 32 ...........T................ AACACTAGGATAGTTATGAGCAGCATCTTGCT 26254 28 96.4 32 ...........T................ AGCCTTACCTTGCACAACTAAGGTATCAATTG 26314 28 96.4 32 ...........T................ AATTGTCACGCAATACGCGGGCAACGAGAAAA 26374 28 100.0 32 ............................ TACAACGAAGCAATTTTCGGTTAATAAGGGAA 26434 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCAGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10126-9737 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOY01000024.1 Vibrio cholerae strain A12JL36W49 NODE_24_length_25621_cov_16.416767, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10125 28 100.0 32 ............................ CAAATAGTTCGACTCTTCACACTCACCAAAGG 10065 28 100.0 33 ............................ CTCAAGCAAGTGCGCAGCGAACGAGTCTAAAGC 10004 28 100.0 32 ............................ TCTTTATGGTGACGACGCTTTAACTTCTTTAA 9944 28 100.0 32 ............................ TCATTGAGCTTTAGACCATTGACGGCCAGTGA 9884 28 100.0 32 ............................ AGACGAGAAAGCCTGTCTATCTGTTCAATGAT 9824 28 100.0 32 ............................ ATGAAAGCCCCACGGACAGCCAAGCCGCTCCG 9764 28 96.4 0 ...........................T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 32 GTGTTCTGCCGAATAGGCAGCCAAGAAA # Left flank : TCATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTGAGGTTTGTTCGTAATCAAACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATCAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTATTCAACAATCATTACCAGTAACGAATGAAGACCGTGTCATCGATAGTTTTCATCAGATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACCAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGACGAAGACTCTTTTTAGTTCATTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAATGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : AGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCCATTTAAGAACTGCAACGCACTTTTGCCCCTTTCCTGCTTAGTGCGATGACTCAGCAATAGATTACTCTGCTGAGTTTGCTATACGTGAGGTTATGGCAGATACCAGAACGCTGTTACATGGAATCTCCCATTTTCGAACATCACACCGTCTATGCTTAGTAGCCTTACTTTTGCATAACAATTCGCTTAGCTAATCACCTACTCTAAAAGAAGTGGTTCAGACAAAGCCTTTCATAGAAATTGTTCTTCAGCTTATGTGCTTTTATCTAAATTTGCTTGGCACTGTAAGTGTTTAATAAACATCGGAATCTTTTTCGCCAAGTGCTTTCTGGAAGAATAAAAAGCATACAGTACTAAATCATCAGGCTCATACT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //