Array 1 106430-104752 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJA01000004.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2038 NODE_4_length_269952_cov_4.55264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106429 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 106368 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 106306 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 106245 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 106184 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 106123 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 106062 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 106001 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 105940 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 105879 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 105818 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 105757 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 105696 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 105635 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 105574 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 105513 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 105452 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 105391 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 105330 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 105269 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 105208 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 105147 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 105086 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 105025 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 104964 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 104903 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 104842 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 104781 29 93.1 0 A...........T................ | A [104754] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123891-123070 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJA01000004.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2038 NODE_4_length_269952_cov_4.55264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123890 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 123829 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 123768 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 123707 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 123646 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 123585 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 123524 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 123463 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 123402 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 123341 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 123280 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 123219 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 123158 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 123097 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //