Array 1 59006-57041 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDHS01000005.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 59005 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 58944 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58883 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 58822 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 58761 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 58700 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 58639 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 58577 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 58516 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 58455 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 58394 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 58333 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 58272 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 58211 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 58150 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 58089 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 58028 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 57967 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 57906 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 57845 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 57784 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 57722 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 57619 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 57558 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 57497 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 57436 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 57375 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 57314 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57253 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57192 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57131 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57070 29 96.6 0 A............................ | A [57043] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8758-7265 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDHS01000098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8757 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8696 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8635 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8574 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 8513 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 8452 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8391 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8330 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8269 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8208 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8147 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8086 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8025 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 7964 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 7903 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 7842 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 7780 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 7719 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 7658 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 7597 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 7536 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7475 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7414 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7353 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7292 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //