Array 1 103679-99087 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKY01000039.1 Streptococcus suis 22083 Contig00040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 103678 36 100.0 30 .................................... AAAAGTTACCAATAATACCAGCGATACCTG 103612 36 100.0 30 .................................... ATGTTTTTCATAATCTACCACAAATTCCCT 103546 36 100.0 30 .................................... GGTTGCTTGGCCGTAAATTTCTACGAACAT 103480 36 100.0 30 .................................... GCTACGGACTTAGCGGATATTGATATTGAT 103414 36 100.0 30 .................................... CAAGGGAAGATTACTCCATGTGGAAGAGAA 103348 36 100.0 30 .................................... ATAGAAATGGGGCGGTTATGGTATCGGGAC 103282 36 100.0 30 .................................... ACCAGCTAAGCAATCTGAAAAGGCAGAAGC 103216 36 100.0 30 .................................... TTACGATGAAGACGGTGGTACCGATAAGGA 103150 36 100.0 30 .................................... AATTAGAACCACTTATGAGGACGATGGTTA 103084 36 100.0 30 .................................... GATAGAATTAACAGGATATCTACCATGATA 103018 36 100.0 30 .................................... CAACAGCGGACAGACCGAGAACGACCTAGC 102952 36 100.0 30 .................................... TCAACGGCAAGCCCGTCTAGTTGGTTGGTT 102886 36 100.0 30 .................................... ACAGTCAAAAACCTATCGAGTTACTAATAC 102820 36 100.0 30 .................................... AAAAAGCCCCCTGCTTATGTGGAAGTGAGC 102754 36 100.0 30 .................................... AGTTACGCAAGTCGATTCTAATACTCTTAT 102688 36 100.0 30 .................................... TGATTGTCCAGGAATTTTTTTGGAAGGTCT 102622 36 100.0 30 .................................... TAAAAAACTTGACAAAATTGCAAATCTATT 102556 36 100.0 30 .................................... GGATTTGAAGACTGACACTTCTACTAGTAT 102490 36 100.0 30 .................................... TAGATTTCCTCATAGCTATCATTTAGGCTT 102424 36 100.0 30 .................................... TAGAATGACTTTGTATGTGCCAAACTATGT 102358 36 100.0 30 .................................... TATTACACGCCTGGAGAAAGTATTAGACTA 102292 36 100.0 30 .................................... ATTAGAGAAGATTTTTTCAGAAACTACCGT 102226 36 100.0 30 .................................... TAAGAATGACAAAAATATTGCTAAACTGAA 102160 36 100.0 30 .................................... GGAAGAATTGAACACAACCTAACAACTGTT 102094 36 100.0 30 .................................... TAAACCTTGCTGACATTGAAGAAGAGGGAG 102028 36 100.0 30 .................................... TAGAAAAGTATTCATTATCATCAATCACAC 101962 36 100.0 30 .................................... AAAAGTTGATGGATACATCTGCATTGACAA 101896 36 100.0 30 .................................... AGCGACAAGTACAGCACTATCTTTTAATAA 101830 36 100.0 30 .................................... AAAAAGAGTGGAGAAAACTCGGACCCCCCT 101764 36 100.0 30 .................................... CAATCTTTTTAAACAAAGAGGAATGGACAT 101698 36 100.0 30 .................................... CGAAGAAGGAATTAATATTCTGCTACATAC 101632 36 100.0 30 .................................... AGCAACAATATCTGAGTTCCTTGGACTGAT 101566 36 100.0 30 .................................... GTCATCGTTGATGTAACGAGCTAAGAGTTC 101500 36 100.0 30 .................................... GCTACAAACCAAACTTTATTAAACGTGAAC 101434 36 100.0 30 .................................... ATGAGTAATCTGTACGGGTACAGATTTTTG 101368 36 100.0 30 .................................... TGTCTATCCATGAAGGTCTTGACCGTTATA 101302 36 100.0 30 .................................... TCATAAGGTTCAGAAGATGTTATTCTTGTA 101236 36 100.0 30 .................................... ATAAGATATGTTACTTTCAACAGGTGTTTC 101170 36 100.0 30 .................................... TCTATTCTATAAAGAGACATTTAATAGTAG 101104 36 100.0 30 .................................... GCACTCATCGACGCTTTAGTTGACAGAATA 101038 36 100.0 30 .................................... TCGAGGAATCGGACGTGTGGACGTTATCTG 100972 36 100.0 30 .................................... ATGTTGAAACACTAGAATTTCAGACACAAC 100906 36 100.0 30 .................................... TGCGGTTAGCGCAATGTCTATGCTCGTCGC 100840 36 100.0 30 .................................... TAGTGTTAAACTAGCGACAACACATACTTA 100774 36 100.0 30 .................................... TAATCTGCTGGAGATACTCACGCCAAAACC 100708 36 100.0 30 .................................... TGGGTCAAAATCAAAAGTGTTTAGGATGAC 100642 36 100.0 30 .................................... AGCCCTTGCCTTTGTTCGCTTCAAAATCAT 100576 36 100.0 30 .................................... GGTAGATAACTTTGAGCAATTCACAGGTGC 100510 36 100.0 30 .................................... GTCCCGTCAGAATTTTAAAGATTTTATTAA 100444 36 100.0 30 .................................... GCAAGGTTGGAATAGAAACAGAATGGTTAG 100378 36 100.0 30 .................................... GATAGTAGTTGCCGAAGCTATTTCAAACAA 100312 36 100.0 30 .................................... TGCTCGGACCAGCAACAAGGTCGAGTACCT 100246 36 100.0 30 .................................... AAAAACGGTCAAGGAATATCTCTTGCGTAA 100180 36 100.0 31 .................................... TCAGCGACAACGTTACTCCAGCAAACACAAA 100113 36 100.0 30 .................................... AGAGACTGTCGAGTCTGCCGTGACTGAGTC 100047 36 100.0 30 .................................... TGACGTATAAGGATTGGTATGCGAAGTACG 99981 36 100.0 30 .................................... TGGACCGATATCTCCATCCTCATTCAAGAA 99915 36 100.0 30 .................................... TTTTCGATATGCAAGCTGTCCCAATCGGGT 99849 36 100.0 30 .................................... CCCTACAAGCGCCGGTAATAAGAACTATCT 99783 36 100.0 30 .................................... TTATTACCAACCGATTTACTACAAATGTTA 99717 36 100.0 30 .................................... TTAAATTTGACCCGACCATGAACGACTTAA 99651 36 100.0 30 .................................... TGATAAGATACTGGGGACGGTAACACGCCA 99585 36 100.0 30 .................................... TTGGTCTTCTTCCGTTTCAAACGGGTTATT 99519 36 100.0 31 .................................... GAAACCAAGGTAAAATCGGGAACTAATAGAG 99452 36 100.0 30 .................................... AGATGCTGAGTATACACTTACTTATCCTAA 99386 36 100.0 30 .................................... TGTCCAACAAACCATTGATAATATGGTCAA 99320 36 100.0 30 .................................... TGTAATGTTTAATAAGTCAGCCAACTCTTT 99254 36 100.0 30 .................................... GACAAATCTACTGGAACATGACGGCATCAG 99188 36 100.0 30 .................................... ATGACCATCATCTGCTTATTGACGTTGACT 99122 35 88.9 0 .........................A..A-.....G | T [99089] ========== ====== ====== ====== ==================================== =============================== ================== 70 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCCTATTTGACAATGGATGAAATTCAGAAAACTAAGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAATAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGAAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : CAGTAAGTTTATAAAGGAAGGAGGGGAGTATTTGGATGTCAAAACTGTTATTTTTTAATACTCCTATTTCTAACAGTAGCAGTGAATATTGTAATTTAATTATCAAAAAAATTACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGACAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAACCTGCATTTATATCATTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAGGGCTTGCAGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //