Array 1 4789-8891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEQ010000006.1 Clostridium perfringens strain QHY-3 NODE_6_length_150343_cov_175.273761, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4789 30 100.0 35 .............................. CCTGAATTTATTTTGTCTACTATTCTAGAATTCAA 4854 30 100.0 35 .............................. AGGCAGGTGGAATATATGACCAAAATAGGAATAAC 4919 30 100.0 35 .............................. ATTAACTGGCTTAATGGACACACTAAGCTTAAAAA 4984 30 100.0 35 .............................. GAAAAAGGATTAATAAAAAAATCTTTTACAACAAA 5049 30 100.0 35 .............................. CAGCTAATGGTTGTGTTATTTTTCTTAGTTTTTCT 5114 30 100.0 34 .............................. CAAAAAGTGTATGTCATTCATTTTCAGCACTTGA 5178 30 100.0 36 .............................. GCTTAGAAAAGAAAATGAAACACTAATAAAAAATTA 5244 30 100.0 36 .............................. GTCACCTCCCTCACTTAGATATTTGCAACAAAAATG 5310 30 100.0 35 .............................. TACCAGTTCGAGTTTGATTTTAAAACTTCTTTCGT 5375 30 100.0 36 .............................. TCAAGTTCTTTAGTCTGTAAATCAATAATTTTCAAT 5441 30 100.0 36 .............................. TGCAACATCAATTAGTAGAAATTCTTTTTCTGTATC 5507 30 100.0 35 .............................. ACTACTCATTATTATACCTCCTATATTGTTTCACG 5572 30 100.0 37 .............................. AGTATTTAGATAAAAGTTTATTACTAGCTTTATTATT 5639 30 100.0 35 .............................. TATGCATTAATTGACGGAAAAAGAGATATTGATAT 5704 30 100.0 34 .............................. CTTCATCAATATTTGTTTTTGATATTCTTTCAAG 5768 30 100.0 36 .............................. AAATGATTTAAAAACTATAAAAAATTCTATTAATAC 5834 30 100.0 36 .............................. AATCAACCAGGATATCAACTCGATTCCAGTTAGAAT 5900 30 100.0 36 .............................. ATTTCTACAAGTTGCCAACCATCTTGGGCAACTACT 5966 30 100.0 35 .............................. ACAAGAAGATAAAATTAGTATTTTAAGTAGTGGAG 6031 30 100.0 36 .............................. CTGGTTAATTGAAAGACAAAAAGGTATTGGTGGTTC 6097 30 100.0 37 .............................. ATATTATTGTTGTACATGTTGGAAACCAAGTGAACAA 6164 30 100.0 36 .............................. TGAATATGGTTTAGCAAATTTAGTCAACAAATTACT 6230 30 100.0 36 .............................. AGTTCTAATTTAACTATGCCTTCACAATTAACAAAT 6296 30 100.0 35 .............................. TACTAAAGAATTAGCATCAGAAATTAAAAAAGCTA 6361 30 100.0 36 .............................. CCAACGCTTATAGAATCAATTAAACTCATAACCTGT 6427 30 100.0 37 .............................. ATTTTTTTCTAATTGGATAGCACCACAACCAATTAAT 6494 30 100.0 35 .............................. ATTATCAAGTTCAAAACACTCAAACTCATCTTTAT 6559 30 100.0 36 .............................. CTACTCATTATTATACCTCCTTTAAATTGTTTCACG 6625 30 100.0 37 .............................. GGTTCGACGCATTAAAAACCCAGGCGCCATATTTACT 6692 30 100.0 36 .............................. CAAGGTTTACGCAATGTATGTTGACAATAGAATAAT 6758 30 100.0 36 .............................. CCTTTTTGCCCTTACTGGGGATGAAAAATTATCCTT 6824 30 100.0 36 .............................. TTTTTCCCGCTATTACCAGGTTGTTTTTTCCATGTC 6890 30 100.0 36 .............................. GAACATTAAATATATTAAGAAGTGTTTCTTAAATGG 6956 30 100.0 37 .............................. ATTTTGTTGTATGCTATCTCCAAAACCTAACATACCG 7023 30 100.0 37 .............................. AAAGATCCTAATCCGTTTAATACATATTCACTCATTG 7090 30 100.0 37 .............................. GGGTATGCAATGGGAAAGAATATACTACACCTGAACA 7157 30 100.0 36 .............................. AGGAGAACGTAGAAGATAAGATAACTACAATGTTAG 7223 30 100.0 36 .............................. ACTGCTTCAACATTTTTGGGACTAATTACAAGACCT 7289 30 100.0 35 .............................. CTACCGATAATACTTCAATTAATAGGCTTATCAGA 7354 30 100.0 36 .............................. TTATACTCATGCATTCTCTTACTATCTATTTTTAAT 7420 30 100.0 34 .............................. CACCTAAAGCCCCAGTTAAAGCTAATCCAAAAAT 7484 30 100.0 36 .............................. CTCTAAGAAAACAATTAGGAGCTAAAAAAGATAAAA 7550 30 100.0 36 .............................. AACAGGACATTCTTTAGTTATGCAAATAGAATTAAG 7616 30 100.0 35 .............................. CCATAGATACAATGTGTTACTGAAACTTTAGTATC 7681 30 100.0 36 .............................. ACAACTCTCAGATTCTATTTAACTAATTTAAGTTTA 7747 30 100.0 36 .............................. AATGGTATTTTATAAAAATAATAGGAGGTAAAAAAA 7813 30 100.0 37 .............................. AGCATTGGCAAGTTCTACTGTATCTCTGCTATGATCC 7880 30 100.0 36 .............................. TTTTAGAGTAATTTCATCTTTAAGTAAATTAATTTC 7946 30 100.0 35 .............................. TTATTTTTTTCTTGTGCAAGTTTAATTGGATCTGC 8011 30 100.0 36 .............................. TGTATATCAGAAAACATTATTTTTTTCATTTCTGCA 8077 30 100.0 35 .............................. AAATCATTTAATTGGTGCATTTTAACTCCAAAAAC 8142 30 100.0 36 .............................. AGGTCATTTTTTATTTATTTTATATTATTTATTATT 8208 30 100.0 36 .............................. AATTCAACAATATTTTTAGCATATTCCAAACATTGT 8274 30 100.0 35 .............................. TATATTTTTGTGCAGTATAATAAATTCTCTTTCCG 8339 30 100.0 36 .............................. AAAAAAAATAGCACTTGCCGAAGTGCTAAAAATGTA 8405 30 100.0 37 .............................. ATCACGGAGCCGACGGTGGGAATAGTGATAAAAGATT 8472 30 100.0 34 .............................. CAGTAGTAAATAGTAGGTATATAACACATCCTGG 8536 30 100.0 35 .............................. GAAGAATATGATTCCGACCCACCATTTTAAAATTA 8601 30 100.0 34 .............................. TCAAAGCAACTCCTAAAGTATCTGCTATTTTTTG 8665 30 100.0 36 .............................. GAAGTTATTACTTTCTAAAAAGATTAAGAATTTAAG 8731 30 100.0 36 .............................. TGTATATACATTTTGTATATACATTATAAAATTCTT 8797 30 100.0 35 .............................. TTTTATAAATCCACTCAATAATAGCCCAAGCTAAC 8862 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 63 30 100.0 36 ATTTAAATACATATCATGTTAAGGTTCAAT # Left flank : TTATATTTTTCAAATTATATTACTTTTGATTATATTACTAGCTTTTAACTCTATCATAATTCTTTATTATATAGATAATTAATAAAATAATAGAGTAAAATACTGAAATATTTTGAAATATGTAAAATGTACTTCCTTTTACCTTGTCCTTTTCATCAAATAAATATTAAACAGGCCAAAAAGAAATGAAACATAGAACTCCATAAATACTTATAAATGATCTTAATATAATATTCCAATTTTCTCCACACATCCATGCTAAGAGACAAAAACTTAAAAATAAAGCCATTCCAAGATTCATAACCCTTATAAAAATATTAGACTTTTCTATATCTTGCCACCACCAGAATTTCAAAATATTTTTTATAATAAAAGATAGTTTTTTCATATTATACCCCTACTTAATTATAAAACTTTATATAGAAAGACATTAAGTAATTATATTATACTGAAAAACAATATAAATTAGTTACTTAATTTTTAGTGAATTCAGTATTAAT # Right flank : TGCTTGTAAAATAGCCATTTTTAAATTTAATAAATATATCTTAATCTAGTTATTTCAATACTTATACTATAATTTTACCAGTGTTTTATTAAGAGTTAAAGAGGATATCGAAAATCAGTCTAAAACTTAGTTGTTTCAAGGGTTTCGCAAACTTTTTCCCACTTAAATCACTGGTAAAATTATATGTTATTTTGAATTAATTATTAAAGTATCAGTGTTTCCCCATTAATTACTTCTTGAATTCCTAGCACTTCTTCTCCAAATACATTTCCGTTTAATAATTTAACAATACATATGAAGTCTTCATCTTTTTCTATTACTTTATTTAAATCCTTTCTTAAGTTCATAAGATTAGCAGGGGTTATTTCTCCCCTAAAAACTGATTTTTGAAAATGAGATAAATACTTCTTACAAACTTTAAACACCCTATTTACCCTCTTTTCATTTACATCATAAAATACAAAAGCATAATTATAATTCATTTTACTTTTCATATCTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATATCATGTTAAGGTTCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 21269-19064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEQ010000006.1 Clostridium perfringens strain QHY-3 NODE_6_length_150343_cov_175.273761, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 21268 30 100.0 35 .............................. ATTAACTTCTGAGGAAAGAAGTTACTATAAAGCTG 21203 30 100.0 35 .............................. TTTAAAATTAAATCTGTGCTATGTCCAGTCCATTT 21138 30 100.0 37 .............................. GTAAAACCTGTCCCCATAAAAATAAATTCTTCTCCAA 21071 30 100.0 36 .............................. TGTTTATGAGGTGATTAAAATGTTTGTAAAAAATAT 21005 30 100.0 36 .............................. TGTTTATGGTCATTTCTATTTGTGACATCAGATACG 20939 30 100.0 37 .............................. AGAAAAGTGGCGAGAACATGGAGCCAGTAGGTGACGG 20872 30 100.0 37 .............................. TATGGTAAATATCTGTTTATAGAACACGCAGAAAATT 20805 30 100.0 35 .............................. TAATTATAATTTAGGAACTCGACCCCCTCTCTGTC 20740 30 100.0 36 .............................. GCGAGGAATTTGACGATAAGAACCCACCTACACCGG 20674 30 100.0 36 .............................. TGCGGATTATAAGAACCAGGTCGACGATAAAATAAA 20608 30 100.0 36 .............................. TTTGAGTTGATGGAATACGTACTACCACAGAGTAGG 20542 30 100.0 36 .............................. TTATTGAAGAGTTTTAACTTAGAGCATATAAAGACT 20476 30 100.0 35 .............................. TGCCCTATTTCTTCTCTTAAGTTTCTAAGAGCTTC 20411 30 100.0 37 .............................. AATGGAGAGTATGAATTTGATGGTTGTAAAGCTAAAA 20344 30 100.0 36 .............................. TTGGATACATATAATTGAATGATAACGGGTTTGGAA 20278 30 100.0 36 .............................. ATAGGCATTTTTTGAAATAACTCAATCATTTCACTC 20212 30 100.0 36 .............................. AAATAGTAATAAAAAAGAGTATGTTTAATGTTTAAC 20146 30 100.0 36 .............................. GCCTATCTTTTACTAACAATATAATTCAAAAGTAGT 20080 30 100.0 35 .............................. GGTAATTCCTTTCAATTAATAACTTTCAGGTAAAA 20015 30 100.0 36 .............................. AAGAAATTTCAGGTAAGGGAATGAGTGAGGTGGTTA 19949 30 100.0 35 .............................. CTAACATCCTCTAAGACTTTTACTAAGTCGGTAAT 19884 30 100.0 36 .............................. TAACCTCAACATGAAGTGGTCCATTTTCTCCTATAA 19818 30 100.0 36 .............................. CACGGAAACCAACTTATTTGTCCTATTTCCTGTAGC 19752 30 100.0 35 .............................. ACTAATTTAATCTCACCTTTAGAGTCTAAATACAT 19687 30 100.0 36 .............................. TAGATAAACTCATCGTCAAAACCGCTTTTGAACTGA 19621 30 100.0 36 .............................. TACCAACGTTAGTATTAGCGTTACTACTTGCAGCAG 19555 30 100.0 35 .............................. ATATCAACTTCATGCTTTTTTACACTAGTTTTATC 19490 30 100.0 36 .............................. AGATGTTACTTAAAAAGAATTAGATATCTTTCGAAT 19424 30 100.0 36 .............................. TTTTTCTTATGCCATAATGCTATAAGCATATTTGAA 19358 30 100.0 36 .............................. GCTAATTATTCCAATGTATCTCTTTTTAAATCTGTC 19292 30 100.0 36 .............................. TTAAAAAAGAATATATTTTTATGCTGAGATTTACAA 19226 30 100.0 35 .............................. CTAAGAATGTGAAAATCTGTAGAATTTATTGCGGT 19161 30 93.3 36 ...............AG............. TGTTCTATGGCCTTTATTTCTATAAGTTTATCTATA 19095 30 90.0 0 ...A...C......G............... | TT [19068] ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.5 36 ATTGAACTTTAACATGATATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGTTACGGAACCCTAGAAAACTTTATATTATTAAACTTTAATTAACAAATTCAAAATTATAAATTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTGAATTTTAGTATTTAATTAATGTATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATTATATGAAATTACCATTTAGACCTTGAAATAACTAGATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAAACACTGGTAAAATAATAAGAGAGATATTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : AAGAACTTTAAATATTAAATTGTTGAAATAGGCATATTGCAATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAACATTTTATTAAATAATTAATATTACAAAAATGTATAAATTTATAAAATAATTATTTGTTTTATAAAATTTGTTGGGTAAAAATTATAATTATAACTATAATATGTAATATTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTAAAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCGTAGAGTATTTAAAGAATGTCTTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATATAAGGAGGTGAGTATGGTGAAAGTTTTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 50112-55541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLEQ010000006.1 Clostridium perfringens strain QHY-3 NODE_6_length_150343_cov_175.273761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================== ================== 50112 29 69.0 9 C...G...T..GA.C.A.....C.....A AATAAAAAA Deletion [50150] 50150 29 86.2 38 A..........AAC............... AATCTTTCGAAACAATTTTTAATGGAAGTACAACTATG 50217 29 93.1 37 ...........A.C............... GGAAAAGGAAGGTGTAGGATTAGATGAAATAAAAGAG 50283 29 93.1 36 ...........A.C............... GAATATAGAAATGGATTAAGAAGACTTGTTTTAGGG A [50286] 50349 29 93.1 37 ...........A.C............... GAGTCGCTTTGGATGTAAAATCAAATGTGTTGCTTTG 50415 29 93.1 37 ...........A.C............... CAATCTTTTTTCTAATAGAAATCTGAGTTAATCCACG 50481 29 93.1 38 ...........A.C............... CTCTTCAAGAAAAAATAGAGCCAATAAATTCAAAATTG 50548 29 93.1 39 ...........A.C............... TTTATGAACACAAAAGAAGTTAACAAGAGTGGTATCATG 50616 29 89.7 37 ...........A.C........A...... TACTTGGACTCCTAACAATGGTAATATAGATTCTTTG 50682 29 93.1 37 ...........A.C............... ATGTTTCTTTTGCTCTTTTAATAATTCTAATGAACAG 50748 29 93.1 35 ...........A.C............... ATTATCTAAATATTCTAGCAACCTACTTGCATTTG 50812 29 93.1 35 ...........A.C............... CTACAAGAGTGTATTATTCTCCTTCAAAAATTAAG 50876 29 93.1 37 ...........A.C............... AATAGATTTCCCAATTGAAGAAGGAATTGTAGAATAG 50942 29 93.1 36 ...........A.C............... AGCTTCTTCTGGAATGGCCAATGTGGCTGGGGCTAG 51007 29 93.1 37 ...........A.C............... ATGAGAGTAGATGATTATGTGATGTCGTTTACTCCGG 51073 29 93.1 38 ...........A.C............... GGGAGAATAAATGTCTAATATAGAAAGAATAAACTTAG 51140 29 93.1 38 ...........A.C............... AAATTAACTATTTCAGATGGTTTTATAAATGATGCAAG 51207 29 93.1 36 ...........A.C............... ATATAAACCATCCAAAATAGCACTATTTATTTTTGG 51272 29 93.1 37 ...........A.C............... TCCCGCTATTCCTACGCCTTGGCTTTCTTTCTTAGTG 51338 29 93.1 37 ...........A.C............... TTTAGACTTAAAGCGTCCTCTTTCTTATAACTAACTG 51404 29 93.1 37 ...........A.C............... ACTCATTTTTACCCTCCTAAGCTTATTTTCACTCAAG 51470 29 93.1 37 ...........A.C............... TGTTATGAAACAGTATGGAGAATTTAAAGAGGACATG 51536 29 93.1 36 ...........A.C............... TTAAAACTACTTGTACCACTTATAGAATTTTCAAAG 51601 29 93.1 37 ...........A.C............... GAAACTATGCTACAACGACAGAGTTACCTTTTTAGAG 51667 29 93.1 36 ...........A.C............... GAGAAAGTCTTAACTTGCGCTAAGTTGTATTTGTCG 51732 29 93.1 36 ...........A.C............... CGAACCCAAAGGCTCTAACATGTATATGTTTCACGG 51797 29 93.1 37 ...........A.C............... TACTTAAATGTATTTTCTTTATAATGTTGTCTACCGG 51863 29 93.1 37 ...........A.C............... TATCATCACCAAAATGTCTTTCACTCGATAGTATAAG 51929 29 93.1 35 ...........A.C............... CTAAGAAGTTTTCAATTTCCTTATTGCTAAAAAAG 51993 29 93.1 36 ...........A.C............... TTAGAAAATATAGACCCACCGCCATTCACTTTCAAG 52058 29 93.1 37 ...........A.C............... ATTTACATTAGCAGTAGCAAGACAGTTTAAAAGAGAG 52124 29 93.1 37 ...........A.C............... GGCGTATCGTAAGTACTTCCATTCCATTTAGCAAAGG 52190 29 93.1 35 ...........A.C............... TAATACATCTTTTTCTAATTCTAAATTAGTTAATG 52254 29 93.1 36 ...........A.C............... TGGTTGCCCTTTTACTCTTGCTGGTGTTAGGGTTGG 52319 29 93.1 224 ...........A.C............... CCTTGTAAAATAGCCATTTTAACTTATTAGATTTTTATCAAAACCTAGTTATTTCAATAAGTATATCATAAATTTACCAGTATTTCACGCTTTTTCAAAGTACTAAAATGAAATAATCTTTAAATCCTCTTATTTCAATGCTTAGATCATATTCTCACTATCTTTTTTACTGGTAAAATAATTAATACTAGAGCACTTAAATTTCATAATAATATTTAATTTCC 52572 29 75.9 26 .A.T....G..A....T.....A....C. CCAAAGTATCTCACTATAAGTTACAA C [52581] Deletion [52627] 52628 28 75.9 8 C.......-T..T..AAA........... AGCTTCTA Deletion [52664] 52664 29 72.4 38 .GG.G..TA..GT..A............. TACCATATAAACAAGATAAAAAAGATATTTTAATCAAG 52731 29 100.0 37 ............................. TTTAAAAAATAATACTCTAATTAACAATAAATTAGTA 52797 29 89.7 5 .........................AGG. TTCCA Deletion [52831] 52831 29 100.0 36 ............................. AAATTTACAGAGAAAGAGAAAGATCCTAACTTTTAA 52896 29 100.0 36 ............................. GTAGAGTTCCAGGAGGCTATAGGTAACATAATAGAA 52961 29 100.0 37 ............................. TTCAACATCTTGTGTTGTTAATTTGGATTTTAAAATA 53027 29 100.0 37 ............................. ATTACACCTTTATAATTACCATTCTCCACAATATTCA 53093 29 100.0 37 ............................. AATATCTTCAAACACCCTACAACTTGGCATTCCTCCA 53159 29 100.0 36 ............................. TAAATCTAAAGTAGCTGCTACCATTGCTGAGGCTAA 53224 29 100.0 35 ............................. CTATTTCCCCATTAATAAAGCTGGAAATTATTTGA 53288 29 100.0 37 ............................. AATATCTTTAAGTGAAGATAATAGAACAGGAGCTGGA 53354 29 100.0 37 ............................. ATCTATATTTTTATATTTGCTGCCTATCTCTATTAAA 53420 29 100.0 36 ............................. CCTACAACGCATGTTGTTATGTATATAGGTAATGAA 53485 29 100.0 37 ............................. TCAAATGGATGGCTTAGGTTTTAAAGGCGTTTTTGAA 53551 29 100.0 36 ............................. GATAAGATTAATGGTATGTATAAAACTGTTACGGCA 53616 29 100.0 37 ............................. TTTCCAACATAAAAATATATTAAAAGAATTAGAGTAA 53682 29 100.0 37 ............................. AATTTTATATTTTGGTGATGCTAGAAATAATAAAAAA 53748 29 100.0 36 ............................. GTAACGTCAAAGGTCATTCCCTTAGTTATTGACAAA 53813 29 100.0 37 ............................. CATACATACTCAGTTTTATTTGTGCCAATTTCTAATA 53879 29 100.0 37 ............................. TTTATACCTAATCAAATTAGTAATTTGAGCTATACTA 53945 29 100.0 36 ............................. ACGCTGAGGAAGAGGAGAACTTTTATGTTGCTCAAA 54010 29 100.0 37 ............................. TATAGTGTCTAAGGCTAAAGTTGACAGTATAACAGAA 54076 29 100.0 36 ............................. GCATCTTCTTCAATACTTCCAGTATCTCTTAAGTCA 54141 29 100.0 38 ............................. TTGCTGTTTTAGCTGATTCAACATTTTTAATTAATTCA 54208 29 100.0 37 ............................. ATTTGTATGATCTCGTTAGTGTCGCACATTTTAAGAA 54274 29 100.0 37 ............................. CCACAACTCATTATATCATACCATTCGGCAAACCTTA 54340 29 100.0 35 ............................. AACCGCCTTATTTTTTAGGTCACCTTCTAAGATTA 54404 29 100.0 38 ............................. AAAGAAAACATTTGTTTTTGTTTACGTTATTTCAAGAA 54471 29 100.0 35 ............................. TAACTAATCTACCTTTATTCCTAACTTCTTCGCTA 54535 29 100.0 37 ............................. CGAGGATATTTACCACCAACAAAACTAAAAAAACATA 54601 29 100.0 37 ............................. ACAATGGAAAAGATGCTATATTAATCGAAAACAATAA 54667 29 100.0 37 ............................. AAGTGAGTTTAGAAATCCAATAACTAATGGAGGATAA 54733 29 100.0 37 ............................. GTGTAAGTTAATCTCAGTAGCAATCCACATACCATAA 54799 29 100.0 37 ............................. AAGCTCGCTGCTATCAGTAAGAATTATTTTTCTCTCA 54865 29 100.0 38 ............................. ATATCCTTTATAATTTCTTTACTATAAAACTCTTCAAA 54932 29 100.0 36 ............................. TAGTCATATACTTTGTTATATAAAATGCAGAACCAA 54997 29 100.0 226 ............................. ACTTGTAAAATAGCCATTTTAACTTATTAGATTTTTGCGAAAATCTAGATATTTCAATAGGTACATTATAATTTTACCAGTGTTTTGTAATTTTTTAAAGAGCTTAAATAAAACAGCCCTTAAACCCACTTATTTCAATGCTTATATCATATTCTCACTATCTTTTTCACTGGTAAAATAATTAATACTAGATCCCTTAAAAATTCATAATAATATTTAATTTCCT 55252 28 79.3 37 A........-.A..C.T.....A...... TCAAATGCTTGAAACTGCTAAGAAAAAAAGTTATATG T [55255] 55318 29 86.2 37 ...........A.C......T.......T AGAAAGGCATTGACCTACGCCATATGTAGTAAATTTA 55384 29 96.6 36 ....................C........ GAATCCAATACAGAGAAAGAAAAGGGACAAGCTTCG 55449 29 89.7 35 ...........CT.......T........ AAGAATTTCGAAAAAGAAACTCTTTAACCAAAGCG 55513 28 86.2 0 .............-......T.A..A... | A [55524] ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================== ================== 79 29 94.6 40 TTTAAATACATTCTATGTTAATGTTCAAC # Left flank : TAAATTGTCCTTCTTAAAATCCATGTCCAAGGAGGTTATTAAAAGCTCTAAGCCTGGATAGTCCTCTAAAATATTAAAACTTAAGCTTTTTATGAACTCCAAAGACTCCTCCTTGCTTTCAAAATAATAAATAGTTTTTCCTCCACCTCTTGTTATAAAATTTTCTTCCTTTAAGCCTTTATTATAATAATCCTCTGAAAAATCCTTAATAATAAGTGAAGCTCCTATAGCATCCTTAAGCTTATTGCTATTAAAAATGTATGTTTGCTTTTTACCTAACTCCCATAAAACTAAACTCCCCAAGGTGCGACACCTTCCTTCCATTTTTTGCTTGCAATAGTATTTTACCACAAATTATTATTATTAATAAATAATACTTTTTAAAACATATTTTAACAAATTAAAAAAATATCAGATAATCCTGTATAAACAAAATTATCTGATAAAAAAGGATATATGGATTTTTAACTTAACTTTAAGTAGATTTTAATATAGAAATT # Right flank : CCTAGAGCAATAAGTCCAAAGAGAGATAAAATAGGTATATTTTAATTTTACCAGTATTTTATATTTTTTAAAATGTTTAGGTGATTGTATAAAGTAAGTTATAAAAAATAGATAGATCAAGGTGATCTACCTATTCTTCTTATATTTTATTGATGTTTTTGTAGTTTGTTAAAGTTATTTAGATAAATTTTGGTAGACAGTTTATAAATATATATTTTACATTTTAATCCAGATTAATTTTAGTCTATTTCCCTACAGCTTAAAACCCAGCAATTAAGTAATCTAACAGTCTGATATGTCTTTTTGATCTCATATTTAGTTCCATCAATCATGGCAATTACAGGTGAAGTTCTTTTAATAAACTCAAAGTCCAAGCCATCTTTTCCACAATATTTTGCAACTTCTAAACAAATATCCTCATCTGTTTTAGGTTCAACATCCAAATCAATTAAAAAGCCTTTTTTAAACATAAATTCTAATCCCCCTTAATAAAGTTAATT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.53, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTAAATACATTCTATGTTAATGTTCAAC # Alternate repeat : TTTAAATACATACCATGTTAATGTTCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //