Array 1 94569-93684 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFNT01000010.1 Escherichia coli strain JML052 sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 94568 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 94507 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 94446 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 94385 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 94324 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 94263 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 94202 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 94141 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 94080 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 94019 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 93958 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 93895 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 93834 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 93773 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 93712 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121700-120268 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFNT01000010.1 Escherichia coli strain JML052 sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121699 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 121638 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 121577 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 121516 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 121455 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 121394 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 121333 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 121272 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 121211 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 121150 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 121089 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 121028 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 120967 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 120906 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 120845 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 120784 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 120723 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 120662 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 120601 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 120540 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 120479 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 120418 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 120357 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 120296 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //