Array 1 3037077-3036314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039854.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014864 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3037076 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3037015 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3036954 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3036893 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3036831 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3036770 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3036709 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3036648 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3036587 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3036526 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3036465 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3036404 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3036343 29 96.6 0 A............................ | A [3036316] ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3055373-3053209 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039854.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014864 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3055372 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 3055311 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3055250 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3055189 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3055128 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3055067 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3055006 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3054945 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3054884 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3054823 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3054762 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3054701 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3054640 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3054579 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3054518 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3054457 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3054396 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3054335 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3054274 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3054213 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3054152 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3054091 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3054030 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3053969 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3053908 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3053847 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3053785 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3053724 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3053663 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3053602 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3053541 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3053480 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3053419 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3053358 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3053297 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3053236 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //