Array 1 250241-251859 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCHP01000003.1 Serratia marcescens strain 2880STDY5682863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 250241 28 100.0 32 ............................ TGGTGCAAATACAGCGAGTGTTGCGGTAGAGG 250301 28 100.0 32 ............................ GCCGGCATAAATCCACTGGCGCAGGCCGTCGC 250361 28 100.0 33 ............................ GCCAGGGCCTCGACCGCATCATGATCGGCTGGA 250422 28 100.0 32 ............................ GTCCGCATTGATTTTCCCGACGGCGCGGTCAT 250482 28 100.0 32 ............................ ATCACTAGCGCATCCAGATTGTGATAGTCGCC 250542 28 100.0 32 ............................ GAAAGCAAATACTGCTGAGTCGGGCCAGCCAG 250602 28 100.0 32 ............................ ACTTAGTGCTGGGTGGGTATGGTGCAAATGCT 250662 28 100.0 32 ............................ TGGTCACCGCCGGACAAGACGGCACGCCCCGT 250722 28 100.0 32 ............................ TATGACACCGACCGCAGCCGCGGCGTCAGCCA 250782 28 100.0 32 ............................ AACAAAACCTACCCGGCGAGAAAGCTGTACCC 250842 28 100.0 32 ............................ AGGCGCACGACAAGCGGGTTTAAAACGATGCG 250902 28 100.0 32 ............................ AGTGAAACCGATTGAAAAGTTTCACGCGAAAC 250962 28 100.0 32 ............................ GTTAGAATATTTGGTGTGAATAGATTGCATGG 251022 28 100.0 32 ............................ ACAAACTCAACCTTGCGCTGACGGGTGTTGCG 251082 28 100.0 32 ............................ AGCCACAACCCAAAATCGTTATCAAGCGCCAT 251142 28 100.0 33 ............................ CGCTGTAGTTCTGCCCATCAAATTTGACACCCT 251203 28 100.0 32 ............................ TTTTTCGCGGGATCATACAAATGCCAGTAAAT 251263 28 100.0 32 ............................ GGGAACGAAAGCACGCTGCAGGCCGCCGCCGA 251323 28 100.0 32 ............................ AAACTCATCGACAACGTTGGCAATTTCACGAA 251383 28 100.0 32 ............................ GGCACAAGAAGAGGTTTTTTGCCTTCTTTCCG 251443 28 100.0 33 ............................ ATGAGCGCTACAACAACCAGATAAGGATCTAAC 251504 28 100.0 32 ............................ AGCCTGATAATTTGTCCAAATCGCCACTAATC 251564 28 96.4 32 ...............A............ CCGGACAGGCCGGCGCAGATCCACAGTTCGTC 251624 28 100.0 32 ............................ GTTCGCGCAAACGGGAAATCGTGATGCAGCCT 251684 28 92.9 56 .........T...T.............. TAGCTGGCGGGTAGTGATTTCGCCGGTATCGGTGCACATGCGTTGGTAGTAGATGA 251768 28 92.9 33 ..T..A...................... CCGACTGCGGCTACGCCTTGTCGTGACCACTCC 251829 28 96.4 0 ....................A....... | A,A,G [251849,251852,251855] ========== ====== ====== ====== ============================ ======================================================== ================== 27 28 99.2 33 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAACGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGTCAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTTGGCAATTCAGGTCATCTGTGGGGGCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCTCCCTAAAGTGCAGAAATGTCACCTTACCCCGTTCCTTTTTGCCGAACCCTTTTTTGAGTGTCACTTTTAATTTATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGGTAGATTCCGGCAGTGATCAATAAGTGGATGACTTTATTTTTCTGATTGATGAATATTGACTCGCTTGCAACGGATTTCCCAGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTCTCCCCCTCTGAGTTAAAAACAATACTGCACTCGAAACGAGCCAATTTGTATTACCTGCAATATTGTCGCGTTCTAGTGAATGGCGGCCGTGTCGAATATGTCACGGATGAAGGAAAACAGTCTCTGTACTGGAATATCCCCATTGCCAACACCACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 260341-262228 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCHP01000003.1 Serratia marcescens strain 2880STDY5682863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 260341 28 100.0 32 ............................ TGCTGCATCACGAAACGCCGCTGGTGTATTGG 260401 28 100.0 32 ............................ CGCGACGGTCGGCATACCGAACTTGTCCAGGA 260461 28 100.0 32 ............................ TGTTCGGCGGCTCGGCCGGTTTTGCGGTTGGC 260521 28 100.0 32 ............................ TGGCGGGTGAATACGCGCCGCGACTGCGGGGA 260581 28 100.0 32 ............................ AATCAGGGGGCAATAATGGCGACGATTGACCT 260641 28 100.0 32 ............................ ATTACGGCCTGCGTGATAAAGTCAGCCGGAAC 260701 28 100.0 32 ............................ TTTTCATAGTGGTTTCACAGTCCCTTGAATAG 260761 28 100.0 32 ............................ GACCGGAAGTGGGTAAGGTTCGCCTGCGTCAA 260821 28 100.0 32 ............................ AATAATTCAGCAATATCGAGCAGGGGGATTTT 260881 28 100.0 32 ............................ GAAATGCGTGAAAACCGTGGTGAGATTTTCGG 260941 28 100.0 32 ............................ TTACTGGATTATTAATCACCCCGTGGGCGTCC 261001 28 100.0 32 ............................ AATCAATTTTTATCTGAATCAGGACAAACAAT 261061 28 100.0 32 ............................ GGATGAATCGCGGCGTGATATTTCCAGATGAC 261121 28 100.0 32 ............................ TATTCCGAATGCGTTAAAGAGTTGCCCAAATA 261181 28 100.0 32 ............................ TGCAGGACATTGAGAAGGTTCGCGCGGCGAGC 261241 28 100.0 32 ............................ TTCTCATTTTTACCCTGTGCCTGCTGACTGCC 261301 28 96.4 32 ...........C................ GGTAAATCATCCCACTCGCACGTTCGCATATC 261361 28 96.4 32 ...........C................ TCGCCAGTCTTACCGCTGTGCTTGTACCACAG 261421 28 96.4 32 ...........C................ TTATTGAAAAGCCCGCGTTTCGCCGGCGGCTC 261481 28 96.4 32 ...........C................ GTCACCGGCAGGAACGGACGCGGGCGGATCAC 261541 28 96.4 32 ...........C................ AGGACGACCTGAACACGTTTGTGCAGCAAGTC 261601 28 96.4 32 ...........C................ GAGGATTTGGCCGTGTTTGAGCAGACGGTCAA 261661 28 96.4 32 ...........C................ TGTACCGCCGGTGCCGCCAACAGAGGCGACGC 261721 28 96.4 32 ...........C................ TGCGGGCGCAAAACGGCAATCAGATGAACCTG 261781 28 96.4 32 ...........C................ GTTGACCGCCGGTACTTTCACTGCTGGCCTGC 261841 28 96.4 32 ...........C................ ACGGGACTCATGGCTTCAACCAAGGGGGCCAG 261901 28 96.4 32 ...........C................ AGTGGCAAGCAATGCGCGCTAAACTTTCTGCT 261961 28 96.4 32 ...........C................ TAAATGGTGCCAATTCGCAAGTTTGTTACCTT 262021 28 96.4 32 ...........C................ TTGAATAATACGTTTAAGGATTAAAAGATGAA 262081 28 96.4 33 .............C.............. AATTTACGCAGCGGGTTGCCGACTTTGATTTTC 262142 28 96.4 32 ..G......................... CCGCGCTTCGATAGCGGCAAGTGTGGCACCAG 262202 27 82.1 0 T............C......-..T...T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGCTGACGGCATTGGAGGGATTCGGCTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCCCATCCAGGCCGTACCTGCTGAGACGGCGTTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTTGAGCGTATACGCCGCAGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCAAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCTGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCGCTGCTACGGTACCCTGGTTTTAACCCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACTGAGGGATTTGCCTATTGTTCTTTAATAATCAGTTTGTTAGTGATTTTTTTTGTTCA # Right flank : TAGGGGGGATAAAAATTTACCGACAGGTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAATGCCAGCGTCAGCTCCCCTTTTCCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGGGAGTGGGGGAGGTGTCGGTCATCGTACGCCGCTTTGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //