Array 1 173267-173836 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBLW01000066.1 Escherichia coli MRSN 10204 contig66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 173267 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 173327 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 173387 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 173447 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 173507 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 173567 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 173627 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 173687 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 173747 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 173807 28 85.7 0 ....................A...C.CT | T,C [173827,173831] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 182894-184723 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBLW01000066.1 Escherichia coli MRSN 10204 contig66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 182894 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 182954 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 183014 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 183074 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 183134 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 183194 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 183254 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 183314 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 183374 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 183434 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 183495 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 183555 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 183615 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 183675 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 183735 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 183795 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 183855 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 183915 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 183975 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 184035 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 184095 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 184155 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 184215 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 184275 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 184335 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 184396 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 184456 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 184516 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 184576 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 184636 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 184696 27 92.9 0 .......................-C... | T [184716] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //