Array 1 525-2290 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000010.1 Ardenticatena maritima strain 110S contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 525 37 100.0 39 ..................................... GACTTCTTCGATGAGTTCTTGCAACCCATCGAAGCGCAA 601 37 100.0 42 ..................................... TCCCACCAAAATACGTCACGTTGAGACCTTTCCACCCAATCC 680 37 100.0 36 ..................................... GCCAACACATGGCGGCGTAGTATCCGAATACCCGGC 753 37 100.0 37 ..................................... GAAAAGTAGTGTACTCATACAATTCCCCCTTTGTTTG 827 37 100.0 38 ..................................... GAAAAGTCGTGTGGCAACTGCCACACGTGAAGGTATAG 902 37 100.0 41 ..................................... CTTCATTTTTTTAGAGAATATACTTGTTATTATCATTTTTA 980 37 100.0 38 ..................................... CCCTTCACCCGCGGCCTTTCTGTTAGCCTTCGCAAAAT 1055 37 100.0 37 ..................................... ACCTACGACAAGCCAGTATGCGCTGCCGTCTTTCAAG 1129 37 100.0 36 ..................................... CCAACTAGTGGGGGCTTTGCGCGTTGACAAGGTAAA 1202 37 100.0 37 ..................................... CGAATGTTCAGCCGAACGATAGTGTCTTCATCGCGGC 1276 37 100.0 38 ..................................... TTGACAACGTCGAGATAGACGAATAGCGCCCATTTAGG 1351 37 100.0 38 ..................................... TTGACAACGTCGAGATAGACGAATAGCGCCCATTTAGG 1426 37 100.0 38 ..................................... CGTATCACCGGCGGCGTGAACGTCGCCACCGGCTCGTC 1501 37 100.0 41 ..................................... ACTTCAATGTAGGCCTTTTCGTCAATCTCAAACAAACGATT 1579 37 100.0 37 ..................................... ACTAGAATGGGTAAAGTTTGCCATTCTTCGGGACTGA 1653 37 100.0 38 ..................................... GTGATAAAATAGCGGCACATAGTTTTCTCCTTTTTTGT 1728 37 100.0 38 ..................................... ACACCGTATTCGCCAAGCGGCTCTTCTGCTTCCAAAAC 1803 37 100.0 37 ..................................... ATTTTCATCCCGCACATCTTACAGAAATTACGCATGA 1877 37 100.0 37 ..................................... TTGCCGCAATCATTGCAAAAGTTTCTCATACCGCTTC 1951 37 100.0 39 ..................................... CAAATGTGGCGGCGGAGTAGCCTACCATCATCAGAAAAA 2027 37 100.0 40 ..................................... ATTAAGAGATACTTATGGTAAACCCCACAACTCAAAATAC 2104 37 100.0 38 ..................................... GGAACTCTTCCCCAATAGTTCCTGCCAAAACCCCTTTG 2179 37 100.0 38 ..................................... CGGATACGGGCTTGCCCAACACAAGCACCATCACCCAA 2254 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 100.0 38 GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Left flank : TCTACAGCCACAACAGCGCCGCCTTCGTCCAGGTCGGCGACCGCGTCCAGGCGGGTCAGCCCATCGGCCGCCAGGGGGATGAAGGCTACTCGTTCGGCAGCCACCTGCATTTTGAGGTGCACGTCGGCGGTCCCTTCACCGGCAATTGGCGGCAGCCTTTCACCCAGGGCGCCTTTGTGGACCCCACCGACTGGTTGCCCCCGCGCTGAACCGAGCATGTTGCGCCTGCACGCGGTCTCGTGTATGATGGCGACACCCGGCGCCAAGCGATGAGGGCACATTTTGCCAGGCAAATAGTTGAACGCGACAAAGTTCTGTCAGACCCCCCTGAAACGGGGCGATTTTGGGGGCGATTTTGAGGGGGTCTGAAAACGTTCAACTTCCTGGAAAAAGAGGCGGCATTTGGCATGGTTTTGGGGGTTGACAAACGCGCCATTTTCCTGTATGCTGTGCCACAGATGAAGCGGACAAGCGGGCGACGCCCATAGCACATCCGTACA # Right flank : CGCAGGAGAAGATGACCGGGGCTTTGACCCCGGTTTTTTCATGCCTTTCGGCTTTCTGCGCCTCTGCTCAGCCGCTGTGGACACCCCGCCACACGCTGAGCCGCAAATGTGGAAAGAAGAGGAGTACGACTTGAAGGAGCGTTGTGCGTGGCTACGTCATCGCGCGCGAGGGCTTGCGGAACCCCAGCCCCACCACTTCGCTGACATCTTGCACAATGACAAAGGCGTGTGGGTCGCGTGCATAGACCAGTCGCTTGAGTTTCTCAACCTGTCGGGGGGAGACCGCCACCAACAACACATCGCGGCGTTGCCCCGTGTACATGCCGCGCCCTTCAATCCGCGTCACGCCGCGCGGCAGTTCGCGTAAAATGGCGTCCGCAATCTCATCGCCATGCGTGGTAATCACGTACACCAGGCGGTCGTCCAGGCGCAGGACGTGCAACGCGCGTTGTCGGCTTGTTATGTCAACAAGATAGTGTAGCATCTCGCGCGGAGAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 1 611610-610528 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000003.1 Ardenticatena maritima strain 110S contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 611609 37 100.0 37 ..................................... ACACTTGGAATGTACCGAGGAACTTCTGTGTATCTTC 611535 37 100.0 37 ..................................... CCACGCAAGGAGCGTCCACAACTGGCTGGGGCGTTGC 611461 37 100.0 38 ..................................... TCTACCAGTGGCGGCGGCGTATCATCCACAACAGAAAA 611386 37 100.0 37 ..................................... CCAGGATTACTAGCCAAACGTTCGATAACGGGTTTGT 611312 37 100.0 39 ..................................... TACGAGGGGCGCGATTGGTCTTCGTGGACTTCTGGTCGG 611236 37 100.0 37 ..................................... TTCGCCCGCGACGTGTACCTTATCCAACGCAAGGTGG 611162 37 100.0 37 ..................................... CGTCGCGCATGACGACGGTGACGGTTTTGTCGCTAAG 611088 37 100.0 37 ..................................... AAAAGTTGTAGTCTTCAGTGACGTTGCCGTACACGTA 611014 37 100.0 37 ..................................... CTTCACGGGCGCCACGAGGTACAAATGCGACGAATAG 610940 37 100.0 40 ..................................... TTTAGTCCTCCGACTCTTCTATTTTCTCTGAACCAACTTC 610863 37 100.0 39 ..................................... TAAATAATGATAAATTTCTGATTGTCGGGGACCTTCTCA 610787 37 100.0 38 ..................................... TTCGGCGATGTCAGAAGCTGAATTTTCAGCAAGGAAAG 610712 37 100.0 37 ..................................... TCCATCCGGGGCTTTTCCCAACATACCGCTACCATCC 610638 37 97.3 37 .........A........................... GGATGTTTCCTTGTTGCTTATTCTGTGCATAGTCTTC 610564 37 91.9 0 .........A........................CG. | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.3 38 GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Left flank : AAGAAGCCGCCCGCGACCCCGATATCGTGGTGATGAGTGCGCGCACAGGCGAAGGGCTGGACCATCTGCTTGAACGGGTGCAGGGCGTCTTGCAGGATCTCTTTGTCGAAGTGGACGTCCTGCTGCCCTACGCCCACGGTGCACTTCTGCATGAAATCCATGAGCAGGGCACGATTGAGTCCGAGGAGCATACCGCCGACGGCACGCGCGTGCACGCCTACGTGCCGGCGTGGCTGGCGGCACGCCTGACCGAAGCCACCCGCAACGCCTGAGCACAACATTTTGCCAGGCAAATAGTTGAACGCGACAAAGTTCTGTCAGACCCCCCTGAAACGGGGCGATTTTGGGGGCGATTTTGAGGGGGTCTGAAAACGTTCAACTTCCTGGAAAAAGGAGCGGTATTTTGCATGGTTTTGGGGGTTGACAAACGCGCCATTTTCCTGTATGCTGTGCCACAGATGAAGCGGACAAGCGGGCGACACCCATAGCACATCCGTACA # Right flank : ACACCACTTCCCCACTCCTCACGGCGTATAACCCGCCAGCAGACCACATCGTCAACCTGCAACAGCAGTTTGCTCCTCTCACGATATTACCCAGCCACAGAACCGCGCCTGCCGGTGCGGGTTGCAGTGGGGTATAATGAAAGAGAGACAAACGCGACGCCGGACAAGCAGCCGGGGCGCTCGCGGTGCTGCTGCGGGTTGCGGGCGTGCAGACTGCTGAACGTCGAAGCCCTGCATGCGGCGAGGGGAAACGCGGCAACAACAACCGAAAGGAGGAAGGTGTATGGAATCGCAAGGGTTGAGCCGTGTGACCATGTACGTGCCAAACGGCACGCCGGAAGATTTGCTGTTGGCTAAAATCTTCGAGCATACCGAGGTGCTGGCTGCTTACGCCTCTGATTGGATGGCAGCGGCGTTATGGGGGTGGGTGCCGCCTGAGTGGGCTTACTTGCGTGTCGCCGCCGTCGGCGTGGCGTATCAGCCGGAAGTCTTCGAGGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.40,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 642621-643487 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000003.1 Ardenticatena maritima strain 110S contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 642621 37 100.0 41 ..................................... GGACGTAAACTTTGATTCCACCCTCCTCGACGGCTTTCATG 642699 37 100.0 37 ..................................... AGAGCACAATTACGCAATGTGTGCTTGCGGGCGATAC 642773 37 100.0 37 ..................................... TCTTGCATCTCTTTTACCATACTCACAACGTCCGAAC 642847 37 100.0 39 ..................................... AAAGCACGGGATAACTCCGCCAATCACAGCACACATAGA 642923 37 100.0 37 ..................................... GGCAATGTATAATGCTTATGGCTGGCAACGCCGCAAC 642997 37 100.0 40 ..................................... TCTATTGTTTTCTATAATCCCCCGACTAAGACTATATAAA 643074 37 100.0 38 ..................................... ATATTTTCTGAATCTGAATTCATTTCACTTGTGATGTC 643149 37 100.0 38 ..................................... GTCAAGGAACTTTTCCCAATTAGTGGCGACTTCTTCAT 643224 37 100.0 38 ..................................... ACTTTGGCCCGCGCTGGTATCGTGCGGATGGAAGCATC 643299 37 100.0 39 ..................................... TAATACTTATTAGAGACCTTCCAACCCGCTTCTTCATAG 643375 37 100.0 39 ..................................... CAAATCACCTCGTGAAGTTCACCTTCGTGTGTTTCCACC 643451 37 94.6 0 ..................................CG. | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.5 39 GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Left flank : GTTGTTGTCAGTTACGACATCCCGGACGACCGGCGGCGGCTCAAAATTGCGCAAACCTTGTTGGATTATGGGGGCGAGCGCGTGCAATACTCGGTCTTTGAAATGCACATCACCGCCCGCCATTTGGAGCGCCTGCAACGCGAACTCTCCGCCATCATTGACCCCGGCGAGGATAGCGTGCGGTTCTATCGGCTGTGCGGCGCTTGCCAGGGCACAATTCTCTACCTGGGCGTCGCCCGCCCCACAGACGGACCGGGGCTTTTGATTATTTAGCAACGCAATTAGCCAGGCAAATAGTTGAACGCGACCAAATTCTGTCAGACCCCCCTGAAACGGGGCGATTTTTGGGGCGATTTTGAGGGGGTCTGAAAACGTTCAACTTCCTGGAAAAAGGAGCGGTATTTGGCATGGTTTTGGGGGTTGACAAACGCGCCATTTTCTTGTATGCTGTGCCACAGATGAAGCGGATGAGCGGGCGACGCCCATAGCACATCCGTACA # Right flank : CTCACAGCGAGGTGTCCATTGACGCCTCGCTCTTTCTTTTGCCCCTTGCTTGACCGTTTGGCATCTCCGCAATTTTTCGTATTCTCTGCGCCGCACGCATCAACAATCTTGGGCACACAACGAACGGCACGCTATGGCATCTCATCCACCCGACCAGAGCATGGGCAAAACGGCAATTCGCGGCTCCATCTACAGCATCGCCGCATCCGCCGTCACCATCCTGCTGGGCTTCGCGCGTGCCGTTTTGCTCGCCCGCTTGCTCTTGCCCGAGCACTTTGGCGTCGCCACACTGGCGCTCTTTTTCCTCAACCTGAGCACAACCCTCACCGCCTTGGGGCTTGATAGCGCCATCATCCACCGCCAGGACGCCGACGACGCCTGGCTTGACACCTACTTCACCCTGCGCCTGCTCGCCAACCTCATCCCGTTGGGCGCGCTCGCCCTGCTGACGCCGCTCATCGCCCGCGCTTATCCCGCCATGCCTGCGCTCGCCCCCGTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 3 892840-890274 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000003.1 Ardenticatena maritima strain 110S contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 892839 30 100.0 38 .............................. GGGCAAACAGGGCAATGGGATGGCGTGGAGTGGACGGC 892771 30 100.0 37 .............................. GACACCTCCACGACCACATCTGTTTGAAGATTGGAAA 892704 30 100.0 37 .............................. GCAACAGGAACAATGGAGCGGTTGGGGAGAGGTGTAT 892637 30 100.0 35 .............................. AAGACATACTGGGACATCATCTTCCACCGGATCGG 892572 30 100.0 38 .............................. AAGACGGGATGCGCGTGCGCCGCGTCCAGGTGGCGCTG 892504 30 100.0 36 .............................. AAGGACAAACAATCGGCATTGCTGAGGCTGGGCGCA 892438 30 100.0 37 .............................. GGGCTGGTTTCGCTAGCAATCGGCGGGCTGCGAACGG 892371 30 100.0 36 .............................. TTGCTTCACTTTGGGCGCGCGAGGTGCGGCGTGTGC 892305 30 100.0 35 .............................. ACCACAAGCAGCGCCGTTGAGGTGCGATACAAACG 892240 30 100.0 35 .............................. CTCCTGTCTCTTGGCTTAGTAAGTATCCTACTCAT 892175 30 100.0 35 .............................. TGGCTTTGGTTTCCGGCTTTGCTCCTGGTAATTGT 892110 30 100.0 39 .............................. TCAAGAGCCAAAAAGGATTGCGAAGCCACAAAATCAACC 892041 30 100.0 35 .............................. GAAAAGGTAAAATGGGTGGTCAATCGAGAGGAAAA 891976 30 100.0 35 .............................. TCGAGAACCCCAACATGGTGTCAGCAAATGAGTTT 891911 30 100.0 35 .............................. GAGCAAAACATACACGATTACAGTAGTGGCGCGTG 891846 30 100.0 40 .............................. ATAACCTGATGGTGGCGATACCGCAAGAACGTTGAGGAAA 891776 30 100.0 37 .............................. ATGCGTTGCAACGCGCATTGTGGCCGTCAGCGTTGAA 891709 30 100.0 35 .............................. CCGATACGCCTCAGCAAGGGCGACAATAGCATCAT 891644 30 100.0 37 .............................. CTCGACCAAAACATGTTCATTGACGCGCTTATGCATT 891577 30 100.0 37 .............................. GTCGGAATCAAATTCGTCGAGACCGTCTTCGAGCATG 891510 30 100.0 36 .............................. CGCTCATACGGCAGCGTCTCAACGACCTGTATGACC 891444 30 100.0 36 .............................. TACCACGCGGCAAAAGGTGGCACGTATTCGACCAAC 891378 30 100.0 37 .............................. AAATCGGAACACTCGCGCCGTCCAACGGATAGTTTGA 891311 30 100.0 38 .............................. GTGTTGACGTGATGCCGTGGCTTCAAGGGATTGTGGGG 891243 30 100.0 37 .............................. AGGCGCGTAAAAGCCCTCTTTTGGCGCTTGCTTCCAC 891176 30 100.0 40 .............................. GTCGCCCGCCGAATGGGCGCGCGAGTTGGAAAAGGGTGGC 891106 30 100.0 37 .............................. CCTGACAGCACAAAGACAAGCCATGCGCGTCGCGACG 891039 30 100.0 37 .............................. TATGAGGAATGGCGCTGGTTGGTCGCCGACGTATCGC 890972 30 100.0 37 .............................. CCGTGAAAATGAAGCCGAATTCACTACAATGGTTCAC 890905 30 100.0 35 .............................. CAAATACGCCGTGGCACCAGCCACAATGGTGAATG 890840 30 100.0 36 .............................. GGGCTGAGCGAAGTGCTGACGGTGGACAAAATGGGC 890774 30 100.0 40 .............................. CCGCGCGTATCGCGCGCGCAGCAGGGAAGGTTTCCCTCGC 890704 30 100.0 35 .............................. TTTTCGTTCCGCGCTTTCTTCTCCTTGACATTTTC 890639 30 100.0 38 .............................. CGCGCCCAACACCACACGCACGCCGGCCGCGCGGCCGG 890571 30 100.0 36 .............................. ACCACACACGCCGCGGTCGAGCATCGAGGTTGTAAA 890505 30 100.0 36 .............................. TCTGGCTCCGATGGTGAAAACTGAATGAGGAGGGAC 890439 30 100.0 36 .............................. CCCAGCCGGCTCTGTTTCTTCGTGGCGAAAATTCTT 890373 30 100.0 40 .............................. TAACCAGTCGAAATGCTGGAGGGACGCTAGCGTGAGGAAC 890303 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 39 30 100.0 37 GTTTTTAGCCTACCTATGAGGGATTGAAAC # Left flank : AGAGGATTACACAAAATTGGAAGGAGTGCCTTTGGCAATGCCGATCTCCTCTCGGCGAACATCTTTGGGAGAGCGTATTGTATAAAAGAGCACGCTATCTTCATCTTCCTCAATCACCTGTCGGATTTCAGATTTCAGGCGTTTGAATTGCGCATTGGTGAGCGAGCCTTCCATAACGGAGTTTTGCACCCACGTTAAATATCGTCGGCCAATGTGAAGCACTTTTGAGACACGTTGGACGTTGACATCATAAACCATGATCACATACATTTTTGGCTTTCCCCCTTATGGTCGAAGTCGCTAAAGGATAGATTGGAGACATTTTCACGGAGTTGGTTGGATACAGGGATGTCGTCGAAGTGAAATAGTGCTTGAAGCCTATGAGATAGACGACATGAAGAGTGTAGAAAAAAGGCTTTGGAATGCAAATTTATTTGACAAAAACATTTTTCTCAAGTATTTTGCCTCTCGAGCGGCATGTCAAATCTACGCAAATTTTG # Right flank : GTCTCTCTCTACCACCAACACCTAGCACCGCCGGCGCAGGGGCGTGAGTATGGGTATGTTGACACGGAGACGCTCATGCGCGGGCGGATTTGTGTAAAATGGTGCAATGATACAATCTTCCATGTGTTTGTCCCGTTTATTACCAACCCATAACAAAGGAGGCTCTCTGTGAAACGTCGTATCTTGTTCGCAATTTTTGTATTGGGATGCGCCTTCGTCCTTACACGAGGCGCCTTGGCGGGCGGGGGTGCGGGGAAGACGTTGTATCTTCCGCTGATCGCAGCGCCTCAACCGTTGGAGTACATCATATCAGGGGATGATGCCATTGCAGGAAGTCACTATCAAGAGGGGCGTACAAAAGAAGAAGCAATAAATCCACCATTCCATAACTATAATATCCCTTGGGCAACGGACACTGGCTTTGCTGGCATTGAGATGTTCTACTTCCCAGATCCTCTTTATGAATTTTACCGCTCGTTTTTAGAGGTAAGTCTCCCCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 380346-378487 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000006.1 Ardenticatena maritima strain 110S contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 380345 37 100.0 36 ..................................... CATCGCGAAACTCACCGGGGTTGAGAGCCTCAGCAG 380272 37 100.0 35 ..................................... TCACAAGCCTACCCACCGGAGCATCAGAGAAATTG 380200 37 100.0 34 ..................................... TTTGTGGATGTCTCGGCTTTCTTTGGTCTGATTG 380129 37 100.0 35 ..................................... TGGCCAGTGAAGTGGGGAAGTGAGAAGAACGCGCG 380057 37 100.0 38 ..................................... GCGGTTTCTGCACGCTCGAAGCGTCGCAAAGCGCGCAC 379982 37 100.0 36 ..................................... TTCCCGTCTTGCGCCGATTGCGCAGGTGCTCCGGGC 379909 37 100.0 36 ..................................... CGGCGCCGCCCACAATTCAAAATCGCGAAGACGCCG 379836 37 100.0 36 ..................................... GAGTACCCGTGGCGGCTGGTCACTGGCACGTATCGA 379763 37 100.0 37 ..................................... ATCCTCCTTGAGCCTCGGTATAGATTTTTTCACACCA 379689 37 100.0 35 ..................................... CTTCCTCTCGGTGTCGCCTTCGCGTGTATGATAAG 379617 37 100.0 36 ..................................... GTGTCGGCGCCGTACCGGCCGAAGCGATGCGACGGC 379544 37 100.0 35 ..................................... ATCGCGGCGCATCAAAGGCGCTCGTCGAAGGTGTG 379472 37 100.0 36 ..................................... CTCGAAATCCTCAACAGTACGGAAGCCAAAGCAGAA 379399 37 100.0 35 ..................................... TTCCACTTTGCAGTTCTTGAACGTCATTGCATTGC 379327 37 100.0 36 ..................................... CAACCGGCGAAAAGTGGCATGATGTGGATATGCATT 379254 37 100.0 36 ..................................... CCAAAGAGGCCAACAATCCGAGCCATCAGGAACGAA 379181 37 100.0 37 ..................................... CCGAAAACGCCGCAAAAAGAACCGAACCGCACCAAGA 379107 37 100.0 36 ..................................... TTTCCATATCTCGCGGGTGAGGATGAGGGTTCTTTT 379034 37 100.0 36 ..................................... TGATGAAGCGACTTCTCCTGGAGGCCATCCAGGTGA 378961 37 100.0 37 ..................................... TTGAGAGAAGCAATAGCAAGATAGCGCAGAGCAGGAA 378887 37 100.0 37 ..................................... CATGGCCTACCTCACCGCTTCCACAAACGCCGCCACG 378813 37 100.0 36 ..................................... CATCATGTATCCGCTCGGCGGTGGTGGGATAGTCCC 378740 37 100.0 34 ..................................... TTCTGGGCGAGGACCCGTCCATCGTGCATGTGAA 378669 37 100.0 35 ..................................... AAAAGCCGTAGGATGAGAAAAACAGACCGCATGAA 378597 37 100.0 37 ..................................... GAATGGTGTTTATGTTTCGCTTGGTACTGGTTCTGAT 378523 37 83.8 0 ...............................CACTCG | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.4 36 CTTTCAGCCGTATTCGATCCGCAGGGGATACTGAAAC # Left flank : CCGATGATGTGATGCCCCAGGCAGGCGTGCAGGTAGCGCGCCTGCGTTCCCTTGCCGCTGCCGGGCGGTCCGATGAGGACGATATGTTGGCACATGTGGGTATCTCGCTGGTCGGTTGGTTTCGGTGGGGACATTCTGGGGGAAAAGCGGCAAATGTTCAAGCCGCAGAGCGCAGGCGCGGCGTCAGAAGGGGTGCAGAGGGGGGTGTTTCGCAACCTAACGGGTGTTTGGTTGCGTTGGTGGGGTTGATTTTGCAAACAATGCAAGTTTGCTGAGGTTTGGTGCATAGATTTGCACATACTTTGTGCAACAAAATAATTCGCAACCCGGCGGGGGTTTTTGCCACGCGGGTGGGTTGCGAAATGCTTTGTGTGTCAAAGGAATTTTGCGAATAAAACAAGGTGTTTTGCGCGTGTGGCGAGCCACTGAGAGGCGCGCTGCGCGGCGATTTGACACGTTCAAGGCTTTTTGGTATCGTTACGCCAGATTGAGCGCACGCT # Right flank : CCGCCCATTTTCTCATTGCCCGCATAACGCGGGCTTTTTTTTGTTTGGCGTGGGGTGGGGTGGTGCAACAAAAAAAGCCCCTGTGCGGGGCTTGGTGGCATGGGGCGCGGGCTAGACCATAGGCCAGGGAATGTGTCGCCCAGGACCGGGCAGGGGATAGCGTTTGTGGTCGAGCAGGGTTTGGGCGCGTTGGCGCAGGGCGGCAATTTCTGCGGCGCTCAGGTAGGGGCGCAGGGCTTGCGCGAGGTCGCCCTGGGGGTGCAGGCGGGGCACAAGCGCTTCGATGGCGTGCAGGATGTCGTCGGGGATGGGTTCTCCCGCCAACTCCCAGAGCACCGTGCGCAATTTGGGTTCCACATGAAAACAGATGCCGTGGTCAATGCACCAGAAGCGCCCTTCCGTGTCGCGCAGGATGTGCCCGGCTTTGCGGTCGGCGTTGTTGGCGAGCACGTCGAAGGCGACGATGTAGGGCAGGACGGGGGCGGCTTCCTCGCGAAAGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGCCGTATTCGATCCGCAGGGGATACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 416770-416440 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000006.1 Ardenticatena maritima strain 110S contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 416769 37 100.0 36 ..................................... TGGGTATGAGGACCCGGGGGATTGGCTTCCTACCAC 416696 37 100.0 36 ..................................... CCTCGCGCACGAATTCGATATCACCTTCCGCCAGGC 416623 37 100.0 35 ..................................... CAGTGCGCTGAGCCACAGAGTCTAGGCTCAGCGCG 416551 37 100.0 36 ..................................... GGAAAGCCAGTTTCGCGCGGCATGATTTGAAACGCA 416478 37 89.2 0 .............................G....CGT | GC [416444] ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 97.8 36 CTTTCAGCCGTATTCGATCCGCAGGGGATATTGAAAC # Left flank : GGGGCGCTGTGCAGGTCAGCGTGCCTTTCTCGCCCACGCTCGCCGCTGGGCGGGCGGCGGCGTTCTTGCGGGTGGCAACGGGCGAGGGGGTGGAACGCACGTGGCCTGTGCGGCTGGATGCGTGGTGGCGTCAATTTGCGCCGCTGGTGGGGCGCGGCAAATGAGGCGGTGCGTGGAGGTGTGTGCAACCCGCGTTCTGGTGGGCGCTTTCGCAACCTGACGCTCGTTTGGTCAATCACCAAAGGTTGATGTTGCAAACAATGCAGGTTTGGTGAGATTTCGTGTGCAGATTTGCGCATACTTTGTGTGACAAAATAATTCGCAACCCGACGGGGGTTTTTGCCCCACAGGTGGGTTGCGAAATGCTTTGTGTGCCAAAGGAATTTTGCGGATACAACAAGGTGTTTTGCGCATGTGGCGAGCCACTGAGAGGCGCTGTGCGCGGCGATTTGACAGATTCAAGGCTTTTTGGTATTGTTACACCAGATTGAGCGCACGCT # Right flank : TGTAGCCCGCATAACGCGGGCTTTTTTCTTTTGATGCGCAAGCCGCCGCCATACAAAAAAGCGCCCCACCAGAACGGTGGGGCGCTTTGCGTTGGGCGCGCTTATGGGGCTTGGCGGAAGAGGAGCGGCAGGAAGAGCCGGTACGCGCGTGTTGTGAATGTCCAGATGGTGGGCACTTGTTGCACGTCGCCCCCCGCGTCCACCTGGCCGGCGACGGTGACCGTGTAGGGCGTGCCGCCTTGCAGGCGCATGCTGGGCGTGAAGATGACCGTGTTGGTCGCGGCGTCGAGTGTGGCTGTGCCGCTGACCACGCCGCCCGGTCCTTCCAGCGTCAGCGCGAGGGTGTCGCTCACAATCGCCTGGTTCCACTGGACGCGGATGGTGGTTGTGACGGGCACGTCCACGGCGTTGGCTGCCGGTTCGTGCGCCACCACCAGCGGGTCGCGCCAGTTGGCGACGCTGGCGGTGACCGTCATCTCGCCGGTGCTCCCGTAGGCGAC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGCCGTATTCGATCCGCAGGGGATATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 17599-19316 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000005.1 Ardenticatena maritima strain 110S contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 17599 37 100.0 37 ..................................... TCCTCAAGCGCCAAAGCATCCAGAAGGCCGGCAAGAT 17673 37 100.0 38 ..................................... CTCGCGTGGGTGTCGTGAAAAGCGCGCCCGCCGTGCTG 17748 37 100.0 36 ..................................... CCCTTCTGCCCGGGAGTTGGAAGAAATAGAGACATG 17821 37 100.0 36 ..................................... GGCGGATTTCTTCGATGACACCTACCAGCTCTACCC 17894 37 100.0 37 ..................................... TCTTTTTTTTCGTGTTCGTACCGGCGGCGGCGCTGGC 17968 37 100.0 35 ..................................... TTCTGTGGTCAATTGTATATCGTCAATGCCGCAAC 18040 37 100.0 37 ..................................... TCGATATTCCAACGTGGATAAAGACGTTGGCGGATGC 18114 37 100.0 36 ..................................... TGCCTCGACGCAAGGTCTCGGCTGCGGCACGGCTTG 18187 37 100.0 36 ..................................... TCAGCAATGAACTGATGGTAGACAGCACGCCCGCTG 18260 37 100.0 36 ..................................... GCATGGTCGCCGTGGCGGTAGGTGGGTTGTTGATTG 18333 37 100.0 36 ..................................... TACATGCGGCGCTTCAATGCCGACGGCGACGATGCT 18406 37 100.0 36 ..................................... CTTTTCGCTCATGCTTCACCTCCCTGGTCGTTTGTT 18479 37 100.0 37 ..................................... TCGCCGTACCCGGCGACCCCCAGGCGACTATCACCAT 18553 37 100.0 35 ..................................... CTCTCGTATCTCGTTCCGCTCCTCTATCGTCCGAC 18625 37 100.0 35 ..................................... TCCTGGATACGTGCCCTTGCAGATGCCATTCCGCC 18697 37 100.0 38 ..................................... ACGTGGTGGTTGTGGCGCTTGAACGTCCGGCTTACGGA 18772 37 100.0 35 ..................................... CTAGCAAAAGCACCCGCCAAACGACGTGCCACAGC 18844 37 100.0 35 ..................................... CCGATAAGTCCACCGATAAAATAGAGTTTCCGCCG 18916 37 100.0 36 ..................................... GTTCTCGTGTAAGACGTTTCAGGCGACTGTACGGTC 18989 37 100.0 36 ..................................... GACGTGTGCGGGGTCCGGCGGGGGGAGTTCGAGCGT 19062 37 100.0 37 ..................................... GTACATCATGGCGCTCGTTGTGAAGCGAGGGCGCGGC 19136 37 100.0 35 ..................................... AAAGGTTTTCATTCAGGAGCGCCGGGACTGGTCGC 19208 37 100.0 35 ..................................... CTGTCGGCTGCACGGAGAGAGGCTGGCGTAATATC 19280 37 83.8 0 ...............................ACCGTT | ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 99.3 36 CTTTCAGCCGTATTCGATCCGCAGGGGATACTGAAAG # Left flank : GCTCGCGGGCGTGTTACCGTTGCGGGACAGCGCCGGACTTTCACCGGTCTTCCTCCATTGTGCGCCGCGCATCCGGGCGACTGGCGCACCTGCACCGAGCCATATGCAATTGTCAACAGGTCAAAGCAGGCGCGATTGTAAGAAAAACCGAACGGGCGTCAAGCGGCGGGACACGAACAGCGCGCAAAACGACGCTGAGCGAGACGGGTTCGCAACCTAACGGGTGTTTGGTCAGCGTGTTCGGGTTGATTTTGCAAACAAAGGAAGTTTGCGTATGTTTGATGCGTAGATTTGCGCATACTTTGTATCACAAAATAATTCGCAACCCGACGGGGGTTTTTGCCACGCGAGTGGGTTGCGAAATGCTTTGTGTGTCAAAGGAATTTTGCGAATAAAACAAGGTGTTTTGCGCGTGTGGCGAGCCACTGAGAGGCGCGCTGCGCGGCGATTTGACACATGCAAGGCTTTTGGGTATCGTTGCGCCAGATTGAGCGCACGCT # Right flank : TTCCCCACCCTCACAGGCTCCCGAACAGGAGCCTTTTTTGTTGCCAGCCCGCCGCGTGCGGGCTTTTTGCATGGGCAACGCACGCGCCACAAGGGCACCCCCACAGAACGCACGCCTTCGGCGGTGTTTGAGGGGCTTTGTTTTCACCCCCGGGGCGAGTACAATAGGCGTGGTGTCAAGGAGAGGAGACGATGGCGCGACGCAAGCAGGAGATTCCAGCCCATATCAAGCCGCAGTTAGACGCCCTGCCGAAACGCCCCGGCGTTTACCTCATGAAGAACCGCGCCGGCGAGATTCTCTATGTCGGCAAGGCGAAGAACCTGCGCAACCGTGTGCGCTCCTATTGGAGCGCCGCCAGCCAGCGCGTGCCCAAAATCCGCCGCCTGACCAGCCAGGTGGAAACCATTGAAACCTGGATTACCGACAGCGAACTTGAAGCGCTCTTGCTGGAAAACACGCTCATCAAGCAACACCAGCCGCGCTACAATGTGCGCCTGAAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGCCGTATTCGATCCGCAGGGGATACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 196793-197281 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000005.1 Ardenticatena maritima strain 110S contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 196793 37 100.0 39 ..................................... CCAAAAACTTCTATTTCCGACAATCTCAACATATAATAC 196869 37 100.0 36 ..................................... CTACGCTCAATAAGGTAAAGCAATGCGCGGTAGTCA 196942 37 100.0 38 ..................................... TGTAAATCATAACGACTCGCCCGCATTTATAACATTGA 197017 37 100.0 41 ..................................... GTTTATAAGACCGTTGCTCTCACCTTCTGAGCTACCCCCAC 197095 37 100.0 38 ..................................... GCATAACCACACATCCGGGAGGATGTGTGGACCCCCGC 197170 37 94.6 38 .........A.........................G. CCCAGAACGACGCCTAGAGCGATAATCCAATCGAACGC 197245 37 70.3 0 .AT........T.CC..............CG..TCGT | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 95.0 38 GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Left flank : ACTTCTTCCGCCGCCACCGCCTGCACCAGCCGCAAGACGTCGGCGGCGTCGGCTTCGCGCACGGTGCGCAAACGTGCGGTTTCTCCTGTTTTGAGTGTGACCAGGCGGGGGAAGATGGTCGTCGCCATGGCGCTCAATCCTGCTCGGTTGGCTCTGGTGGTTGGTCGGGGGTATGATAGCAGGTGTGGGGGACGTGGCAACCAGGCGCACGCGCGGGGTTGCCCATTGGCGCGGAGTGCGGTATGCTCGGCACACGCTTTTGCCAGAGGCGAGAGCATATTTTGCCAAGCAAATAGTTGAACGTGATAAAGTTCTGTCAGCCCCCCCCCTGAAACGAGGCGATTTTGGGGCGATTTTGAGGGGGTCTGAAAACGTTCAACTTTCTGGAAAAAGAGGCGGCATTTGGCATGGTTTTGGGGGTTGACAAACGCGCCATTTTCCTGTATGCTGTGCCACAGATGAAGCAGACGAGCGGACGATGCCCATAGCACATCCGTACA # Right flank : TTCTTGCACCGTCGCGTGAGTGTTCGCGCGCGGTGTGTGCGCCAAAGGCTCCCACGGGAGCCTTTTTTGTTGGGTGCACGGCGGAGCGTTGACAGTGCAGGCACAAGCGGTTATACTCCTGCCCAGCCAAGCCAAGAGTGAAAACGGCTGTGAACCGGAGGAGTAGGCGGCGACGGTCGCCAGAGAGGGGCGGTCATCGGCTGGAAGCCGCCCTCGACACGAACCGCCGAAGGTCGCCGGGGAGCCGCAACGGTGAAGCGCAGTAGCCGTTGCCGGGAGCGCCCGTTATCGCGCCACGAGCGCCGGCATCTTCTGCCGGAAGCAGGGTGGTACCGCGGAGGCAACGCCTTCGTCCCTGAGGGGGCGAAGGCGTTTTCACTTGTGGGGGAGCGTATGTTGCCACGCCCATTCTGGCAACGCCTGTACACAACCGACGAGCAAGAGGCGGAGCAAGCCGCCCAGCGGCTGGCGGCGCTCGCCCGCGCCCACGGCGCCCAGCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA // Array 3 383335-386919 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000005.1 Ardenticatena maritima strain 110S contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 383335 30 100.0 35 .............................. TTGCCACTGAAACGGCGCTTCGCGATTTGTTCCAC 383400 30 100.0 36 .............................. CTTCGATCAGCTGTTGGTGGATGGGTGTGGCCTCTG 383466 30 100.0 37 .............................. TGCACATGACGACGGGACGCTTGCAATTGCGGTCTCT 383533 30 100.0 37 .............................. CTCGTATTCCTTCCCTGGGTTTGGTTTCTTCTTTTGT 383600 30 100.0 38 .............................. TCATTCGTCAAACAAGCCCCATCGCTGCAATTTGCGAC 383668 30 100.0 37 .............................. TTCTTTAGTTAGCCCACGTCGCTATCGCCGAAGATGT 383735 30 100.0 37 .............................. CTTTCCCCTGAGCAATTTGAAGCCGCAAAACATTCTA 383802 30 100.0 39 .............................. TCAATACAGCGCTGAATTGAAGGTTGACGGTTATGGTAC 383871 30 100.0 38 .............................. AAAGAGACGGCTACCTTCTCTTATTTGCTTCTCTACTC 383939 30 100.0 38 .............................. AACGCACCAGCGCCGCGCGGCGGTCGCTCATGCCCTTG 384007 30 100.0 38 .............................. TACCACGCCGCAAACGGCGGCACATACTCAACCAGAAC 384075 30 100.0 35 .............................. TTCAAAGCGACAAGGTTTGAAGATGTCGGCAAGTA 384140 30 100.0 39 .............................. AAAAAGAAAGGAGAAAAAGGACAATGAAAAAGAGCGATA 384209 30 100.0 37 .............................. TCAAATTAGCAATCGCTAGCCCAAGAAAACTGCCAAT 384276 30 100.0 37 .............................. TGCTGACGCCGCGGCGCGTGAGCACGTTCAAGCCAGC 384343 30 100.0 37 .............................. CTGACGGGTTCGCCGACCATATATATTCAAACTATCC 384410 30 100.0 36 .............................. TTCAGGCGTACATTGAGTATTGGCTAGAAATTATTG 384476 30 100.0 40 .............................. CAATGTTTGCGGATGAAGCGGCAGAGTTTGAGATGGTCAG 384546 30 100.0 39 .............................. TTTTTCGGGAAGGTGTCAACATCTCGCAAGCGAGTCACA 384615 30 100.0 37 .............................. CCAAGAAGTCGTGGTGCCTGGCACCACGACCTACGAA 384682 30 100.0 38 .............................. TCGCCATCACTCACCACCGCATCGCCGTCAATCACCGC 384750 30 100.0 36 .............................. GGGTGCTCGGGGGTCGTGCCCGAGGCGCGTATATTC 384816 30 100.0 36 .............................. TAGAAGACATTGATACGGACGTTTCCCAACGCACGC 384882 30 100.0 37 .............................. ACCCGCGCAAAGCCGACCCCGTGGGCGTGGACTTGCA 384949 30 100.0 37 .............................. TCGAGGTGGAGACGCAAGACATGATACATACGCGTTT 385016 30 100.0 36 .............................. AATGAACAGAATGGCGCGCGGGTCAATGTAGCCGTC 385082 30 100.0 36 .............................. GTCGGAATCAAATTCGTCGAGACCGTCTTCGAGCAT 385148 30 100.0 36 .............................. TCGCCCCCTGTAATGTCGTTCCACGCGCGCACCCAG 385214 30 100.0 35 .............................. CCCAAGAAGGAAAACGAAACCTAAGCATCACCATC 385279 30 100.0 39 .............................. CAGGAAATCGAGGCTGAAAAGGCGGACGCCGGTTTTGTG 385348 30 100.0 35 .............................. CGGTTTGGTTGGCGGGCGGGGCGAGCCCCATGCAA 385413 30 100.0 37 .............................. GTTCACGTGGGCGGCGTGCGCGCCCACGATGATAACC 385480 30 100.0 35 .............................. TGCGCGTGGGGTTCACGTGGGCGGCGTGCGCGCCC 385545 30 100.0 37 .............................. CCAGAACCCAAGCCGCAAATCAACCCGGACACGTGTG 385612 30 100.0 38 .............................. TAAAGCGGGCGATGTTTCATCTGTGCAGGCAATCGTAG 385680 30 100.0 37 .............................. TAATGGACGGCGCACCTATGCGGCGTGTCCAGGTGGC 385747 30 100.0 36 .............................. CGATACGCATCAGTTCAGGCAATTCCTTCAACAACG 385813 30 100.0 35 .............................. AATACGGCGACATGCGGCTACTTGGCCGCATTGTC 385878 30 100.0 39 .............................. CATATTCTATTTTCTCATAAATCTGGCCGCGGTACTCTT 385947 30 100.0 36 .............................. CACGTGTGCCAGGTTTTGTTCTACTCTTCAACAAAA 386013 30 100.0 38 .............................. CGCGCACGCTACACGCAAACTACGCGCAATTACGCGTA 386081 30 100.0 37 .............................. AAGGCGTGCGGTGTTCCACCTGCACGGTTGCGGTGTT 386148 30 100.0 38 .............................. TCATATATCCGCAACCGACACCGAGACGAAGGAGCACC 386216 30 100.0 38 .............................. CTACTCCAAAACATGGCTTGTTGCAGCAAGATAGCGGC 386284 30 100.0 38 .............................. TTTTTCGTGGACGCCTGTGAGAGCGGGAATAGTGTTCT 386352 30 100.0 36 .............................. GAGGTGAGTGTGTGGCTCGCGCGCATAGTGCTACTG 386418 30 100.0 35 .............................. TGCTACTCATCACCCAGCGCGGGTTTTCAATCGGC 386483 30 96.7 39 ......................A....... CGTATTCGAGCATGTCAACTTCTGATTGGTAAAAGGCGC 386552 30 96.7 36 ......................A....... TTCGCTACGCGCGTGAGTATGCGCGCATGTTGCGTA 386618 30 96.7 39 ......................A....... GGGATCAACGTGGCGGTGGCGGACATAGCGCCGGGTGAA 386687 30 96.7 37 ......................A....... AACGCTCTCATCGTCGCCGTCGGACGCCGCACGCACC 386754 30 96.7 37 ......................A....... AAATCGAAATGCTACCCGCGCCTGGTCCAGGCGCGGG 386821 30 96.7 39 ......................A....... CCGGTCGGTGCAATTCGCGTTGCGGCCGTCTTTGAAGCC 386890 30 96.7 0 ......................A....... | ========== ====== ====== ====== ============================== ======================================== ================== 54 30 99.6 37 GTTTTTAGCCTACCTATGAGGGGTTGAAAC # Left flank : CGCACCGCCGGCATGTCAACGTGCACATGCGCTGTTTGCACGCCAAACGGGGCGGCGTTGCGCGCCGTCTGGGCGACTTTGGCGGCTTTGAGCAGGGCTTTGCTGGGGACACACCCCGCCCAGGTGCAATCGCCGCCGATGCGCTCTTTTTCGACCAGGGCAACAGGGACGCCCAGGTAGGCGGCACTGCGGGCGGCGGTCAAACCGGCAGAGCCCCCACCAATGACAATGAGCGGGTAGGTTTTGCTGGTGGACATGATGTGTTCTCCTTTGACGCTTGGTTCTGAGGGAATTGTGGCTGAAATACGGGCAAAGTCCATTTTTTCATGCCGTCGCAGGCTGGCGCTGATGTCGTCGAAGTGGAATCGCGCATGCAGCCCAGGGGTTCGACGACAGTATGAGCGCCCAAACAGGCGTCATGGCACGAAGCAATTTGACAAATTCACTTTTCAGGCATAGTTTAGGTGCAACATTGGTGCTTGAAAGTTGCGCAAATCTTG # Right flank : CGCGTTGGGCTTTTTGCCCCCATGATGCCTTCTGAACCCCTGCGACGATTGCATGTTGCCCCGACACACAAACACCCTCCCCCGCTCACTCTTCACGACGTCAATCGCGGGAAGTGTGCTATAATGCGCCCATGCCAACATCCACACATGGGCATGCGCCATGAGCCAGCAGCCACCACTGCAAGAACTGGAAGGGACCGTCGAGCGGATAACCTACCAGAACGAGGAAAACGGCTACACCGTCGCCAAGATACAACCCAAGGGCAAGCGCTACGAAATCACCGCCGTGGGGACGCTCAGCGGCGTGCAAGTGGGGGAATCCGTGCGCCTGCGCGGCTTCTGGACGACCCACCCCGAATATGGGCGGCAGTTTGAAGTGCGTTCCTACACCGTGCGCCTGCCCGCCACGATTGAAGGCATCCGCAAATACCTGGGAAGCGGACTCATCAAGGGGATTGGTCCCGTGATGGCGGAACGCATTGTGGCGCACTTCGGCAAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 27754-26889 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGKN01000001.1 Ardenticatena maritima strain 110S contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 27753 37 100.0 37 ..................................... CAACAAACATAATCCGCCTCCTACAAAAGAGTCGTCT 27679 37 100.0 38 ..................................... ACGTAGTCTTCCCGTTGATTGGATTCAAGTAAAAGGGA 27604 37 100.0 36 ..................................... CGTACGCAACGCTTGAAACGTACGCTCGAATTGTCG 27531 37 100.0 39 ..................................... GTATTCCACGACCTTCCCAAGGTCGCCTTTCTCTTCAAG 27455 37 100.0 37 ..................................... TCTGTCCACGATGAATATCCCAATCAATCTGGTTGCC 27381 37 100.0 38 ..................................... CGTCACGAGCACTGTCGACGTGTTTGCGCCGTCTCCTA 27306 37 100.0 38 ..................................... AGACTTTACCCCAAGCGCCTTCAGGCGCACATCGCTCA 27231 37 100.0 39 ..................................... ACAGGATACTTTTTGCCGTTGACGGCTTCTAAGATCTTG 27155 37 100.0 38 ..................................... TCGAAAGTGGCTATCCACGGACGTGGGTGGTATTCATG 27080 37 100.0 41 ..................................... CGACCTCAAAATATCGCACGCCTACGTCCACATAGGCGCGA 27002 37 97.3 40 ..........................A.......... AGCATGAACGCAGTGGACGTTTTGCCGCCGCCAAACCTTC 26925 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.8 38 GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Left flank : GTTTTGGGGGTTGACAAACGCGCCATTTTCCTGTATGCTGTGCCACAGATGAAGCGGACAAGCGGGCGACGCCCATAGCACATCCGTAC # Right flank : GCAGGAGAAGATGACCGGGGCTTTGACCCCGGTTTTTTCATGCCTTTCGGCTTTCTGCGCCTCTGTTCAGCCGCTGTGGACACCCCGCCACACGCTGAGCCGCGAAGGGGGAAACGAGCGGAGAGAAAGCACGCGGTAAGAAGTGTTTGCCCTGCGGCGTCTCTACACTAGAATACTTCCGCCAACCTGCAAAAACGAAAAGGACTGTTTATGGCCAGAAAAATTGTTGTTCTGGCGCTTGCCTTGCTTCTTGCGGCCTGCGGCGGTACAAGCACCGCCCCCGCGCCCGAAGAACGCAGCGCCGACGCCACCCACACCCGCGAACCGACAGCGGCCGCATCCGCATCACCCACCACCGCCGCCGTCACAGCGACCGATACGCCGCCGACCGCCACCCAGGCGGCTGAGCCGACCACCAGCGCGCGCGCATGGCCGGCCTGGATGACCACCCCCGTGCGCGACGTGCGCACCGGCGAAACCTTCACCATCGCGCAACTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAAGCCCTAATCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.40,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //