Array 1 170577-171418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPQ010000007.1 Nodosilinea sp. FACHB-13 contig7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 170577 37 100.0 37 ..................................... CTGTCTCTGGCGCCGCTGTCGGGGGCTATGTGGGGGG 170651 37 100.0 37 ..................................... ATCGTAGTGTAGTTGCTGGCGTCAAACGTGCCGCTGG 170725 37 100.0 37 ..................................... AACTAAAGCAAAGGTCAACACCATCATGGCTAGGCAG 170799 37 100.0 36 ..................................... AAGCCAGCTACGCTATCCTCTTAGGGAAGCGTAATC 170872 37 100.0 38 ..................................... TTGACGATACAATTGGGCCCTAAAAAACGTTTCAAGGC 170947 37 100.0 37 ..................................... AGGCTAACAATGTGCTCAGAGCCCGAGGGCAGTGTGA 171021 37 100.0 35 ..................................... TCCTGCTGCCGGTTTACTCTACGGTCTTTTCCGTA 171093 37 100.0 37 ..................................... AATTCGGTTGAGAGTTTCCACTTGGGCATGGCAATGG 171167 36 97.3 36 .....................-............... TCGATAATCTTAATGTCCAGCAGCTCGGGGGCATTT 171239 37 97.3 37 .....................T............... CTCAAGCCAGACCCCTACGATAAGGGTGAAATCGCTG 171313 36 81.1 32 ........C..GC........TG.....-....G... GCGACGTAATCAAGCATTCCCCATGCGACAAG A [171324] 171382 37 75.7 0 ........C.....C....A.TG....GTC.....C. | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 95.9 36 GTTGCCTCACCCTTTGAGGCCCAGGAGCGATTGAAAG # Left flank : TACTCTGCAGGACAAAGCACGAGAGATCGCGATTGCAGGCTTTCAATCCCGCAAAGTCAGCTAAATTCTTGACAGTGGTTCATGGGTACCAGTACATTGTTTCTAGCGCCGCAGCTCATGCCAGTAATGGCCAATGTGTTGTGCAAAATGCGAGCTAGTTTGACTATCTGCTAAGTAGTCTTGCTTTCTGGCTCAGGTAACTGTCCACCCGCAAGGTCGTTGGTGCGCTGGCGATCGGAGAGCATGGGTCCTGTAGTGATGGTTACCGCTTACACCTCCGATCAAGGAGGAATCCACCCAAACCCTAAATTTGGCAAACCTAAGCAAGGGCGAAATCTCTAGGGAGTTTGCCAAAAAAGTGAAGCCATTATTGTGGCAGGCTTTCGGCTTATTGGCTGTAGCCCAACCAGTACCCCAAATCCTTTTCTTGCTGTAACAGTGTAACCTTTGCCAAAAAGGCCATTGAAACGCTTGATGGATACGGGCTGTAGATCACAGGG # Right flank : GCATAAAACGAACTGATGCAGCATCACGCGCGGGCAAGCTGCCTCACCATTTGGGCTTAGAAGCTAAAGTCCCAGCAAACTGAACTAATGTCTTTCAGGACAAGCGTACTGCCACACTGGGTTTGCGTTATTCTTGACTTGGGTGGATTGAAAGGCGCGCTTCCTTCACACTAGGCTGATAGAAGCGCTTTTGGACGACACTAAAGTGTTATCGACTGATCTTAAGGCTTTTGATGACATCAGACTGTTAAGACGACATCGAACCCGTTAGGACGACACTAAAGTGTTATCGACGACAACTAAATCGTTACTCGACACTCGACAGTATGGGCGATACTGGTTTCGAACCAGTGACCTCTTCCGTGTGAAGGAAGCGCGCTACCACTGTGCTAATCGCCCTTGGGTTTTTTAAGATAGCACATCTTCTGGGGCGGTTTAGCGAAAATCTTAATTTCAGGTCAAGCCATATCAGGAGGGACTGGGCTGCCCTGTTGTGCTTG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCTCACCCTTTGAGGCCCAGGAGCGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 760807-761067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPQ010000017.1 Nodosilinea sp. FACHB-13 contig17, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 760807 37 100.0 38 ..................................... CAGCGGGCCGAGTCATCCCGGCGCTGCCGGAACTCCAG 760882 37 100.0 38 ..................................... TATCTCGGCCAGCGGCTCTAGCAGGGTCGTCATGCTCA 760957 37 100.0 37 ..................................... GGTAGTGTAGGTGGGTCGTGTTTACTGAGGAGTTAAG 761031 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 38 CTTTCAACCCAACCACAACTGGGAGGGCTGATGCGAC # Left flank : TTGAAACGTTCCTATCCTCTGCTAAGATATGAAACTGCAAATGCAAAACGGGCGATTAGCTCAGTTGGTAGAGCGCCTGCCTTACAAGCAGGATGTCACTGGTTCGAGTCCAGTATCGCCCATATCTGTTGTTGTACGTTCGCACGCTAAATGTCGCGATTCGCAGATTGATGTCGTTTTTCGCACAATCGTGTCGTTTTGGCAGAAATTCTCTATCGAGATAGACAGAACTGCGCTTCGCAAATTAGATGTCGCTAATTGCTCCTGAAGATGAATCCAATTTAGATTTGGATCCATCTCTTGAAAATAGATCGTTCAGCTATTTACCCATCCAAATTATGAACGAGTTGGCGTAGCCCTTATTGTTGTAAGGCAGGCGCTCCTTTCAACCCTCCTCTGTCTTAGATGGTCTTAACTTATGCGGCGACCCCTTGCTGAGAGAGCTGATGCAACCACAGTCCTACTGTCAATGTAGGCTGACGGCCCAGCTTTATTGCGCC # Right flank : CTCCGCAGCGCAAGATCCTTGATGTGAGCAGGTTCCAGAGCTTAGTTTGGCGAACCTACTCTCTGTGGCTTTAGTCCGACTAGGTTGGAGACTACTAGCTCTCGCTAGATATCTTTCGAAGATAGCCTAGACAAGCCTTTCAGGACTTTGGCAAACCCCCTAGGGATTTTACCCTTGCTTAGGTTTGCCAAAAAATATTGGGGGAGGGTTCCTCCTTGATCGGAGGCGATTCGGTAGCCACCACTCCAGTTGTTCTACATCACTAAGGATGTAGAGGTTCTGTACCCTCACAAGGTGAAGGCTTTACTTCCTTTGCCGGGTGCGCACCTAAGCTACATTAGAAGAGAACACTCAACTAACCTAGCAAACCACCCATTCTCAGTTAACTGAGGTGGGCAGCGGCTTCAGAGTACATCCTTTGACGGGGTCGCGGAACGCGCTCGTTGGAAGCGGACAGCTACCAGGGCCGGAAAGAAAAGCTGTTGGACAACAGCCAAACT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCAACCACAACTGGGAGGGCTGATGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 146241-144745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPQ010000016.1 Nodosilinea sp. FACHB-13 contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================= ================== 146240 34 100.0 39 .................................. AATTGATAAACCCGCTGCAAACACTATCAAGCCCGTAGT 146167 34 94.1 39 ........T.....T................... TTGTACCGCACACAGCGGTAGTCGCCATCGACAAGAGCC 146094 34 100.0 36 .................................. CGCTGGTCAGCATACTGGCTGTAGCGCTCATCAATC 146024 34 100.0 37 .................................. ACCCCCATGTAGACGTAGTAAGCGCCCCTGAACACGT 145953 34 100.0 36 .................................. TCTACTTCCCTGTAGTACGGTGCAATACGCAATGTC 145883 34 97.1 42 T................................. TTGCGGAACCAGGTCAAACGGGCCGCGCGGAATTTGGGGATA 145807 34 94.1 43 .C..T............................. AGCAGGGCCTTTGTGCGCCGGAGCATGACGGGGTACTCCTCCG 145730 34 97.1 38 ....................G............. TCAATCCTCCATGAGGGATGAAAAATACTCTTCAAAGT 145658 34 82.4 42 T..C.T....CA.......T.............. GCTTCTCCAATTTCCTCTAACGTCTTTCCGTGCTGTGACTGC 145582 34 79.4 39 T..C.T....CA.......T.............T TCGATAATGACGATGCGGTAGTCCTGATAATGCTGGCGT 145509 34 79.4 38 .ACCTC....TT...................... TCTAGATCTCTAAATTCAGAGGGGTTTAAATAAACGTC 145436 32 79.4 45 ACC....T.--T...................... TTGTCGTCAGCCATCACTGTGAATGACCAGTGCAGCCCTGTCAGT 145359 34 76.5 38 .ACC.C....TT...............T.....T GCCCTCTGCCACCTGTAGTTTTTGTTGAAGACGTAAGT 145287 34 82.4 43 .ACC.C....TT...................... CTAGTGCTGGTGGGCATAGCCTCGACCGGGACTCCTGATAAGT 145210 34 76.5 38 TAC..C....TT................A....T ATGTAGAAGCTGACCACCAGCGTCTCGTAGGCCAGATC 145138 34 100.0 36 .................................. ACATAGAAACCTTGCACTAAACAAATCGCCCGATTT 145068 34 97.1 36 ........T......................... TTCACAAGGTTGGCAATAGGCATATTACGGTATGTA 144998 34 97.1 40 ....A............................. ATGCCGTTGAGGTTGTGGCGTTGATTATTGGCGAAGTTGC 144924 34 97.1 40 ..............................G... TGTACCTTTTTGGCCTTGTTGTAGGGTGCCGCGACGGCGA 144850 34 97.1 38 ...........T...................... GTGAGGGGGCAGGTGTTGAGTTGGCGACGTAGGGCTTG 144778 34 94.1 0 ...........................A.A.... | ========== ====== ====== ====== ================================== ============================================= ================== 21 34 91.5 39 CTTTCAAACCACTTCCCCGCAAGGGGACGGAAAC # Left flank : CACTCGCTTAATCGTTTCCGTCCCCTTGCGGGGAATGGGTTAGGAAAGACACAGTATGTCTTCGATTCTAATATCACCCATAACTTGTTTCCGTCCCCTTGCGGGGAATGGGTTAGGAAAGTTGACTATTCACTCTGGAGGTTAAAACCATGAAAGTTTCCGTCCCCTTGCGGGGAATGGATTAGGAAAGCAGCTCCATATCAATACCGTCACAACCTGATCATGGAGTTTCCGTCCCCTTGCGGGGAATGGGTTAGGAAAGTTATTGTACGCTGAAAAATCTGGGTTACTGTTGGCAAATATGGCTGACCGCCATAGGTCGGCAGAACCTTGAAAACCGCATAGTTTTATTTACTTCCGTGGATAGCTTGGCCCGTAAGGATGACAGGCTATTCGTTAAATCTATTTTTGTGGTTTGTGGGGTAAGACAGGGCAAGGTTTGCCTATCCGTGGTTTTACCCCTCTAGAACCTGCTCTAAAGCTTTATTCAGAGCAGGGGT # Right flank : ATGGTGTCGGCTGCTAGGTTCTTACCGGACTGGCCACGTGTCAAATTACCCCTAAACACCTGCTGGCAACGTAACGATAGAGCCCTCTTTTGCTAAGGGTAGCCAGAAATATTAGGCTGACGTACTTGGGCTGTAGATAAACGGGGGGCTCACCTCAGGAGGCAAAGCCGCCGAAGGCTTTATTCCGCTATCTCAACGTTAGCCGCCAATAAATAGAAAGGCGGAGCGTGCGCTTGTAAGCGTCCATGGATGGCGGTGGATGGTGAAGTTATCATCATGATTTTGGTGGAATGCCTAAACTTTTCCCCCATCGGTCTGGGCAAGCTAAGAAGGCTTAAAAAACTTAGCTTTCATAGTGATGTGGTGTGTGGCTAGCACAGCGTCTTGATGGCCAATTTACAGCCGCAGCCCGACGGAATAATGGAGAGACTGGCATGGCAAGATTTGTCTTAACTCCCAGCAATAGCTATGCCACTGCCCTGGAATGGTCAACGCGGCCT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCACTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 146479-147765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPQ010000016.1 Nodosilinea sp. FACHB-13 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================== ================== 146479 34 100.0 38 .................................. CTCCATGATCAGGTTGTGACGGTATTGATATGGAGCTG 146551 34 97.1 35 .........T........................ CTTTCATGGTTTTAACCTCCAGAGTGAATAGTCAA 146620 34 100.0 39 .................................. CAAGTTATGGGTGATATTAGAATCGAAGACATACTGTGT 146693 34 100.0 41 .................................. CGATTAAGCGAGTGAGCTTTATAAGCATCAAACTCTAGCCA 146768 34 97.1 38 ..........T....................... CTCCATGATCAGGTTGTGACGGTATTGATATGGAGCTG 146840 34 94.1 35 .........T.......................G CTTTCATGGTTTTAACCTCCAGAGTGAATAGTCAA 146909 34 97.1 42 ......C........................... CCTTTAGATGTCATATACGGCAATATAGAATCCATCTTGACC 146985 34 100.0 41 .................................. CAGATAGTAGCTAAACTCCGACCGACGGTTATCGCGAACAG 147060 34 97.1 40 ........................A......... TGGGAGCTTGACTTTTCCGTAATCGTTGTATTTCGGTTGC 147134 34 94.1 39 .............A.G.................. CATGGCGATATCGTCTCCGAAGGAAAGCACCATTGAGTC 147207 34 97.1 40 .......................A.......... TCCCTAACACGGCTGACCAGGCTGCGTCATCGTCTGCTGC 147281 34 97.1 38 ...........T...................... CTCTAAAGCCGCCTCAGCCGCCTCAGCCGCCTCAGCAG 147353 34 91.2 42 .................TT............G.. CCCAACTGAGCGACAGTATGAACAGCGCTATCTTTCAACAGT 147429 34 85.3 37 ....T......T..........GA.........C TGCCCTCACGAGCAGCAATGTCCAAGTCAATGTGAGA A [147458] 147501 34 94.1 38 ....T......T...................... CTCTGAGTTCTCAACGTTGCGCCAGAACTCGGCCTTAA 147573 33 91.2 41 .......-..T.......T............... CGATTACACCAGCTCGATTTCTGGATGTTCACAGGTTGCAG 147647 34 91.2 50 ....GT.............A.............. CAATAATTGGGATACGAGCAAAACGGGAAACTGGCGATCGCGAGAACTAG 147731 34 100.0 0 .................................. | A [147760] ========== ====== ====== ====== ================================== ================================================== ================== 18 34 95.8 40 CTTTCCTAACCCATTCCCCGCAAGGGGACGGAAA # Left flank : CTACATGGGGGTGTTTCCGTCCCCTTGCGGGGAAGTGGTTTGAAAGGATTGATGAGCGCTACAGCCAGTATGCTGACCAGCGGTTTCCGTCCCCTTGCGGGGAAGTGGTTTGAAAGGGCTCTTGTCGATGGCGACTACCGCTGTGTGCGGTACAAGTTTCCGTCCCCTTGCGGGAAAGTGATTTGAAAGACTACGGGCTTGATAGTGTTTGCAGCGGGTTTATCAATTGTTTCCGTCCCCTTGCGGGGAAGTGGTTTGAAAGACCCCTGCTCTGAATAAAGCTTTAGAGCAGGTTCTAGAGGGGTAAAACCACGGATAGGCAAACCTTGCCCTGTCTTACCCCACAAACCACAAAAATAGATTTAACGAATAGCCTGTCATCCTTACGGGCCAAGCTATCCACGGAAGTAAATAAAACTATGCGGTTTTCAAGGTTCTGCCGACCTATGGCGGTCAGCCATATTTGCCAACAGTAACCCAGATTTTTCAGCGTACAATAA # Right flank : CAGTTTTCTTTACCTCTAGAGAACTGTTATCTCCATCAAGACTTAGTCAAACCTGGCATCTGACCCTCAATTGGGGCAAAGTTTTCAATCGACCCTTTGAGACCTCCACAAGAGGCAGACTATTGCTCTTATTTAACTTTCTGCCAGAGCAAGCTGAAAAGATTATCCAAGATTTAGTGGGTTTTGTTTAAGCAATGCGGGAGCTTCTGGAGTTTCCACCAAAAACTGCTTAGGCATCCCCCCTCAGCGATCGCCGCGCTAGCTTGCTATGGGTCTTTGCTGTCTCATAGGGAATGCTCAGATCTTCAGCAATGGTTTGCAGCGAGTCGCCCAGCTCTCGCCGTGCCAAAACCGTCGCCCAGGTTTCCGCCGAGTCTTGGGCGCGGGTGCCTCCAGTGCGCTTCTTTTGGTTGACAAAATAGGTCGTCAGTTCCTCGATGCGATCGGCTAGCAGCCTTTGGGCTGCAGGCACTGGCTGAGGCTCAGCCTGGCTCAAGTGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTAACCCATTCCCCGCAAGGGGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //