Array 1 47543-49343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKSN010000001.1 Rathayibacter sp. VKM Ac-2878 n1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 47543 28 100.0 33 ............................ CAGGTGCCCGTGGATCGCGCGTAGATGCGCCCC 47604 28 100.0 33 ............................ CAACCTGTTGCTGATCTTCGGTCAGTGCCCCGA 47665 28 100.0 34 ............................ CGCCCCGCTGCGGAGCCACAGGGCCGACCGCATC 47727 28 100.0 33 ............................ CCCTACGTGGTGGTGGAACCCGCTCAGCTACGT 47788 28 100.0 33 ............................ CGGAAGACTCTCGCCGAGCGCATGGGGTTCTCG 47849 28 100.0 33 ............................ CGTGAGGAACGCGGACGCCCACAGGATCGCCAT 47910 28 100.0 34 ............................ CCTTGGCCGACACGTCGGCCTCAATCAAAGCGCG 47972 28 100.0 33 ............................ CGAAAACATTGAGAAGCGTGTGGCCGCGATGGA 48033 28 100.0 33 ............................ CAAGCGCCGAGGCAACCGCGTGCTGAACGGGTA 48094 28 100.0 33 ............................ CTCGTCGGGTTGAGGACGTCGAAGCCGGCCGCG 48155 28 100.0 34 ............................ CTTGGTCGCCTGCCGGACGGTGGGCATGCGGGTG 48217 28 100.0 33 ............................ CCCCTCCCCCTTCGACTTCACCAACCAGGCGAT 48278 28 100.0 33 ............................ CACGTCGAGCGCGCTCATGATGCGACCTTGACG 48339 28 100.0 33 ............................ CAGGACCCTTCGGTATCCGGATACGCAAAGCTC 48400 28 100.0 33 ............................ CGGCAACGCCCGGGTCTCCGGCAACGCCTGGGT 48461 28 100.0 33 ............................ CTCGATCGCGAGTCTCGGCGGCAGCGCGCGGGC 48522 28 100.0 33 ............................ CGACGCGGCGGATGCGGCGAGCCCGTCGACGAC 48583 28 100.0 33 ............................ CCTGAGGCCGGCGTGCGACGTGTGCAACAAGCG 48644 28 100.0 33 ............................ CGTGATCACGGGGTTACTCCTTGGTGGGGTGGT 48705 28 100.0 33 ............................ CTACAGGCAGCGGCATGATGCTCCTTCGAGTGC 48766 28 100.0 33 ............................ CCCCCGCTCCGCCGTGATCGCCGCAGCGCCCGG 48827 28 100.0 34 ............................ ACTACGTCCGCGTCCGCCTCGGCACCGGCCCGCT 48889 28 100.0 33 ............................ CGCCGGCATCGCGGACATTCCCGACGCGCTCGG 48950 28 100.0 33 ............................ CGCGTCGGCGGTCGGCGATGAGTGCACCTCGAC 49011 28 100.0 33 ............................ CTCTTCGGTCGGAATCGGGCTGATTTCTGGTTG 49072 28 100.0 33 ............................ CTTCTCGCGGAACCTCTACGGCGGCTTCGGGCT 49133 28 100.0 33 ............................ CCGCCAGGTGGCCGCGTGGGTGAACCCGCAGGG 49194 28 100.0 33 ............................ CGAATTTGTCGGCCCTACGGTGTATGTCCAGAT 49255 28 100.0 33 ............................ CACCGCGGCCGTCACGAATGCCTCGATGATGCC 49316 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 30 28 100.0 33 GTGCTCCCCGCGCAAGCGGGGATGATCC # Left flank : GGGACGGCGCGAGCCGGACCGTCGAGTCTGGTCGCGCCTACGGCTCCTCGCCCTCAGAGAGCGAGGAGGACCTGTTGTGATGGTGCTCGTCCTCTCGGCGTGCCCGTCGGGGCTTCGCGGTCACCTCACGCGGTGGCTGCTTGAGATCAGCCCCGGAGTGTTCGTCGGCCATGTTCCTGCGCGCGTACGCGATCTGCTGTGGGAGCGTGTCCTCGAGCTGGCGAAGGATGGACGGGCAATCCTGGTCCACTCCACCAAAGGCGAGCAGCGGCTCGCCTTCAAGGTGCACCGCCACGACTGGCGACCTACCGATTTCGACGGGGTCCAACTCATGTTGCGCCCGTCGAAGGAGAACGCCGAGGAGAGCGCCCCAGCTCTGCGAAAGGGCTGGAGCAACGCGAGCAAATACCGTGCAGGCGCCCGACGAAATCGCAGCACGTGACCGAGGCAAAGTACGCTCGGAACAGCACCCGCCGCAGGAAACTGCCTGGTCAGCAAGT # Right flank : CACGGTCGGCACGGGCCTGATGTTCGTTGCGCTGCTGGTGCTCCCCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCGGGGATGATCCCGGCGCCACTCGCTCGGCCGGAACGTTCGCCCAGTGCTCCCCGCGCAAGCGGGGATGATCCCAAGATCAGCGTCATCGACCACCTGCGCGAGTGGTGCTCCCCGCGCAAGCGGGGATGATCCTGAGGGGCGGATGGTCACCCAATCGCCGACCGTGTGCTCCCCGCGCAAGCGGGGATGATCCCGGCGCCACTCGCTCGGCCGGAACGTTCGCCCAGTGCTCCCCGCGCAAGCGGGGATGATCCCGTGATGATCTTCGGTCACGACAAGGTCTGGGTGTGCTCCCCGCGCAAGCGGGGGATGATCCCAGGCCGATCGAGTCAGCGACCGACCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAAGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAAGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49541-50119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKSN010000001.1 Rathayibacter sp. VKM Ac-2878 n1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49541 28 100.0 33 ............................ CAAGATCAGCGTCATCGACCACCTGCGCGAGTG 49602 28 100.0 33 ............................ TGAGGGGCGGATGGTCACCCAATCGCCGACCGT 49663 28 100.0 33 ............................ CGGCGCCACTCGCTCGGCCGGAACGTTCGCCCA 49724 28 100.0 33 ............................ CGTGATGATCTTCGGTCACGACAAGGTCTGGGT 49785 28 100.0 33 ............................ CAGGCCGATCGAGTCAGCGACCGACCCATCCGG G [49806] 49847 28 100.0 33 ............................ CTTCCGCACGCCCTTTCGCGCCCAGGGACCCTT 49908 28 92.9 33 .................C.........T CGTGACCACGAAGCTGCGGCGTGCGATCATCCG 49969 28 96.4 33 .......G.................... CGAGGCCGCGAACGTGTGCCGGTGGCGTGAGCT 50030 28 92.9 33 .......T.................C.. CAAGCGGGACGTGCTCGATGCGACCCACGAGCT 50091 28 92.9 0 ........................G..T | T [50099] ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 33 GTGCTCCCCGCGCAAGCGGGGATGATCC # Left flank : CTTCGGTCGGAATCGGGCTGATTTCTGGTTGGTGCTCCCCGCGCAAGCGGGGATGATCCCTTCTCGCGGAACCTCTACGGCGGCTTCGGGCTGTGCTCCCCGCGCAAGCGGGGATGATCCCCGCCAGGTGGCCGCGTGGGTGAACCCGCAGGGGTGCTCCCCGCGCAAGCGGGGATGATCCCGAATTTGTCGGCCCTACGGTGTATGTCCAGATGTGCTCCCCGCGCAAGCGGGGATGATCCCACCGCGGCCGTCACGAATGCCTCGATGATGCCGTGCTCCCCGCGCAAGCGGGGATGATCCACGGTCGGCACGGGCCTGATGTTCGTTGCGCTGCTGGTGCTCCCCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCGGGGATGATCCCGGCGCCACTCGCTCGGCCGGAACGTTCGCCCA # Right flank : TGGCGTGCCCAAGAACGATGGCGCGTGCGTGCGAGCGCTATCCCCGCAAGTACCGCGGGTGCACACCCGGGCACGGGGACTCCGCGGCCTCCTGCAAGCGAGCACGCGCCTCCGCCTCGCCCGCGACCACAACCGGCCGCGACGGCGAAAGCGAGCAGCCGCTCCGCGGTCGCACTCGAAGGAGGCGTCCCTCCGCGCGCCGACACCGCGGGCCGCACGCCAACCGCCGCCGAATCGTGGCCGCAGAGGCAGCCACCCTGCGGCGCCCGCCACACGCCGTTCACCCCTACCGAATACATTCGAGAGCGTTCACCTTTCACTCATCACGCGAACAGGACAACGATGCGCAGACTCCGCGCCGCCAGCCTCCTCGCCGTCGTCACGCTCGGAACGGCCACCGCCGCTCCCGTGGCGACTGCGGCCGCCCTCGACGACGCCGTCGAGCTGACCCTTGTCTCGACGACCGACACGCACGGGCATGTCTACGACTGGGACTACTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAAGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAAGCGGGGATGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //