Array 1 4866-5429 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHT01000062.1 Dorea longicatena strain 1001175st1_H1 NODE_61_length_18987_cov_7.25283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4866 36 100.0 30 .................................... AACATACACACTTATCCCACATTTTGAGAT 4932 36 97.2 30 .C.................................. TTGAAGATTTGGATCCTGAATCAGCAACGT 4998 36 100.0 30 .................................... TACAAGGTAGCGAACAGACCGGCAACGATG 5064 36 100.0 30 .................................... ATGCCAAAGCTATGTATCAGATGTATCTGG 5130 36 97.2 30 ....................T............... TGTTGGCATCGAAATATGTTCAAACAAACA 5196 36 100.0 30 .................................... TTGAAGACGAATTACATAGTAGAGAAGTAG 5262 36 100.0 30 .................................... GGCTGATAGATTTGGATAATATTATAGGTG 5328 36 100.0 30 .................................... ATCAACAGAATGAAAATTGAAGAGCAGAAA 5394 36 94.4 0 .............A.................C.... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.8 30 GTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Left flank : AAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATTGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGTTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAGTCTGACTGAAAAGTTTATAAACTATCTGAGAACCATGAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATCTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTTATTAATTTGGAAGGAGTAAAATCAGACCCCATCGAAAGTGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTATTAACAATCTTCTATCGTAAGAAGATAACGACTCGGCGAGAACCGGATTTGAG # Right flank : CCACCAAAGAGTTCAGTAAAATCAAGCGTTCTCAGTTCTGCAAACGATAATTTAACAGAATATCGAAAAAGAGCAACAAACCCCGAAAATCCAGTATTTCCGGGGCTTTTCTTTGCGTATCATTTGATCTTATTCCTGCAATAATTGCTTTTCAAAGGTGGATAATAATTTGTTGATCGTAAAGAAATAACTCTTGCATTCGCTGCATGTTTTTGCATCGACTTCGATATCACCAAGAATGATGAGTTTGGCAGCCTGGAGTGCTGCAATAATGGTACGAAATTCGTCAGGTGTAATATCTGTGGCGTGATTAATCAATTTTTTCGCCGCAGAACAACAGAGTTGATAATTAATTTCTGCCTGGGCTTCTGATTCTGCAAGTCCAAGACGAGGCAGAACGGTAAGAGCATAAGCGGTTGCTTCTATGTCAGAATGATTAAAGGCATAGGAAATATGGCTCATAGTAAAACCTCCTTAAGTTTTTAAGAAAATTATAACAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 4995-5295 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPHT01000095.1 Dorea longicatena strain 1001175st1_H1 NODE_94_length_11443_cov_4.01601, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4995 36 97.2 30 ..........C......................... TCCTGTTCTTTTTTATAGACTTTCTGCTGT 5061 36 97.2 30 ..........C......................... CTTTTACCACGTTGTCCACTTTATCATAAG 5127 36 100.0 31 .................................... TTGGGCGATCTTTATCCTCTACTTCCCCGTA 5194 36 100.0 30 .................................... TTACATTTGTCGACTCCTCATTGTAACCGT 5260 36 86.1 0 .T..........................G...G.TT | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 96.1 30 GCTTTGTACCTATGTCAAATCATAGGCTTCCAAAAC # Left flank : CGGCCAGACGTTTGGTATGTCTGGACAGTCTGAATTTGAGCAGATTTTGGATCAGTCTGCTGGATACGGATTATTTATTATGGCAATTACGCAGAAGATAGCAGATATGCCGTCTTCAATCATTGCAAACAGCGGTTTAGTATTTGCTGGAAGGCTGAAACGAACCGATGATATCAATGTAGTAGTACGGACGGTTGGACGTGAAGAGCGTATCGATGACCGTGATCTGGTCAAATGGTTTCCTCGAAGTCCTACAGGCTGGTTTGTATGCCAGACTTCTCGAACATTTGACTTTAAGGATGCAGAACCGATCCTGGTACAGATCAGCCGGTTGAATATCAACCCACCATCAAATCTGGAACTGGATGAAATCCTGATTCAGAAAGAAGCAGAACAGAAATTAAAGAGTGCGTAAAAAAGAACAGCTTCCTTAAAAAAGGAGGCTGTTTTATCATTATGAGATACGGAATAATCTGTTCTGATGTAAGTACTGAATTTAT # Right flank : TTTCAAATAACATAGATTTTGGTGAGTGGACTAACTGCCCTCACCTTTTGGCTGCAAAGTCAGCCAGTAGTTTTGCTTCTATTTATAGTATGTCAGATAGGGATATACAATAAAGAAATACATATTAAGGTTAGTTGACGGTATGATGATAAAAATATATAATTTAGATGTAATCAATCTATTATTTTGACTATAAATATATAATTATGTAGAGGAAAAAGAGATGCAAAAGAAAAATTTTTGCCCATATTGCGGAGCAAAATTAAGTGGTGAGGTTCGCTTTTGCCCACAGTGCGGTAAGAAACTGGAAGATGATAGTATAAATAATTCAGAAGAAGTTTCTCAAGAGGAATCAATTGAAGAAAATATTCCAGAGCAGCACTCATCGGGAGAAATAGTTTCGGACAATACTCCAAAAAAGAAGAATGAAGGAAATGAAATTACGGAAGAATTTCCAGATGGTTTGGATGAAAATCCATCTGGAATTAAGAAATCGAAAA # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTGTACCTATGTCAAATCATAGGCTTCCAAAAC # Alternate repeat : GCTTTGTACCCATGTCAAATCATAGGCTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //