Array 1 1017375-1017726 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYAW01000002.1 Chitinophaga niastensis strain DSM 24859 Ga0180968_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1017375 30 96.7 35 G............................. ACCTCTTTGTAGATAGCCATCGCTTCATTCGTTTC 1017440 30 100.0 36 .............................. GAGATACTAGCATCTAATAACTGTTGCCCGGTACTA 1017506 30 100.0 34 .............................. ACGGATCTGGATGAAGCAATTCGAATACTTACTT 1017570 30 100.0 34 .............................. ACGGATCTGGATGAAGCAATTCGAATACTTACTT 1017634 30 100.0 34 .............................. GAAAATAATTTACCATTGGCAAAAGCCAGTGTGT 1017698 29 90.0 0 C..................-.........A | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 97.8 35 TCTTTTAATCGCACCAAGTGGAATTGAAAT # Left flank : ACCAACACAATACATCGGAGCACCGGCCTATCGTCAGGCACATGGTGCAAGTCCTATTAAACTGCAGGCACACGGTGATAAAAGTGAGCCGATCAGTTTCAGGAATATTTGGGTAAGAGAATTATAGGAGCGTATATATTGTATGATATTGAAGAGGAGTTACCAGTGATGGTAACTCCTTTTTTGTTAGCTGTTGGCCTTACCTTCAAATAATCTGATAGCATGTTTGCTGATGGTGGTTGGAAACCGGGCTTTTAATTTTTCCGGCACAGGATCCCGGTATGTACTTGACCGGCCTTCAATATGCAGCCATCCCGAAGGATCGAGCGTTACAAAGGCAAAAAGCGCATCTTTATAGAAATGTGCTCCGGAGTCGGTGTACACGTAGCTGGCGCTGTTCAGCAGGAAATAATGTACGCCGTTTCTTTCTCCATACCGGTCGTCGTGGTCAAGTGGAATTGAAATATAAAAGTGGGAACATTAAACACCCCCATCAATGC # Right flank : AGATTCATAACAGAGTGCATTTACAGACGGCGGGGATGTAGTATATTTTAAATGCATTAAGAGGGAGAATAGGTAATGCACAAGCCGCAAGCATTGCATCCAGGGCAGAAAATTCAGCAATGTTAGCCACATATAAGTTGTATGCGAACAATCCAACGATTGGAGATATTACCTTGAGCCAATACTTTATAGCCCAAATGAATGAATATATGAGCACCTGGGGAGGTCGTGCAACAATTACACCTCCAATGAATCTTGGTGTTCCAATTAATTCGGCAGTATATGGCTGCCCAAATGGATTACCTTAGTGTATTAATTATTCTCAAATGAATATTATAAAAATATGTTTCCAATGTACATTTAAATATCTTCGTAAAGCGAGCTGCATTTGCATGATACTTTTAACGATATGCACCATATAAATCTATGGCACAAATTAAGATTACTAATTCCGGGATAAACGATATTAGGCTTGGAATGAATATTCAAGATGCCTCAAA # Questionable array : NO Score: 8.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTTTAATCGCACCAAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 1019129-1019481 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYAW01000002.1 Chitinophaga niastensis strain DSM 24859 Ga0180968_102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1019129 29 93.1 35 ...T........................A TCGGTTCCGGGAAATGGCCCGTAAGTCATATCAAA 1019193 29 100.0 37 ............................. GGTATAATACACGCGATATACACGATATACTTAAAAC 1019259 29 100.0 36 ............................. AACAATTCATTTGGGCGGGCCTGGCCTGCCAATGTC 1019324 29 100.0 35 ............................. GGTTACCATGGTGGTGAGTATTACAGGCGGAACAC 1019388 29 100.0 36 ............................. AATTACAATGGGTCGTTTCATGGTAACCTGAAACGA 1019453 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.9 36 CTTATAATCGCACCAAGAGGAATTGAAAT # Left flank : TATTCTATAGAGACAAGAATGCCTTATCATGATTTTATGATAAAATAAAATGTAAGTTGCAAATTATCATATGTATAGAAAAATGCCTTCCCTATAAAGAAAAGACATCAAAAGTCCGAAATAGCTTATTTCAAAAAACGTTCATTATGGATATAGAAAAAATCGAAATTATTACGCACCCATTTTAATATGGATGACACCCACATTGAGCGCCTGCAGCCTGTTTTAAGTGCAGAAATTGATCAGGAAGAGTTGCAGCAAAAAATATCTGTAATCCACGCTTTAGTACGTGCCTCGGATGGAACAATCAGCAACATTCCTGAATATGTTGTTAAATCTATCCTCCACCATTTTTCATTACCTGAAATGTAGTGTTTATTACAATATTTCAAAAAACACTGGTTTTTTGAAACTATTTTTACCATCTGTGTAAGGTGAAGCCTGATCTAGTTTTTATTATTGTCAGGTCAAATATCGACTTTTACAACTAATGTTACTAA # Right flank : TGAATAAATACAGAACTAATGCAACTTCCCGCAACACGAGCGCTCTGGCCTTAAAAAAAATTAGCTACCCTTTATAAAAAAGAATAGCCAATTAAACTGAAACTAAAACACTAAAAAATTAACAATCATACGTCCTGTGTGTTGTAGTGGTAAAGATCGTATGATCTTTGTTGATACCTTTCCCCTCGTTGGAGATGTTCAATTTGGCAACTTTAATTGAACCCAGTTTCATTTTTTTCTCGTTTTTCTTTTTCATACTAATATGTGTTTAGAGGATGTAGAAAATACGGAGAGATAATTTTAGCGGTTATTTTTTGCGGGTACCGGCTCTTTCGCCTGTTTTTTAAGGATGGCTGTCATAGAGTCATAGTACCTGCTGAGGAAATGATATATAACCAGCTCATGTTTGCGCTGGTTGGATAATAGTATTCTGTTAAGGAACATATGAATATAGCTGGAGAGCAGATCATCGCGGTTGATGATGCCTTTTTCAGCAAGTA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATCGCACCAAGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA //