Array 1 1636-2258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMG010000032.1 Clostridium perfringens strain CP-33 32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1636 30 90.0 35 .G......G...T................. CTATAATTATTATTTTCTGTGGCTTTTAGATATTC 1701 30 96.7 36 A............................. ATATCACCTAGTTTATAAAGCATATAATCTAAGTCA 1767 30 100.0 35 .............................. AAGATAATATTAGGAGCGTTTAAATCTCTCATTTC 1832 30 100.0 36 .............................. TTGTGCATTACAAATACTTGTGTTCCTTGTATTTTT 1898 30 100.0 35 .............................. CGCCTTTTTCATAAATCGCTTTTAATTCTTCTAAA 1963 30 96.7 39 ................A............. TTTAAATGCTTACCATATAGTCTTTCTGATAGGTTTAAG 2032 30 100.0 36 .............................. TTAGCTTTCTTAATATAAATCATTTGACTATATTGG 2098 30 90.0 35 ........C.......AG............ GCGATTAGAAATATAGGTAAAAATATTACTGCCAT 2163 29 90.0 36 ......T.A......-.............. AAGCTACAGAAACTCTTAATAGTGCTAAAATCTATA T [2181] 2229 30 90.0 0 ........A......G.T............ | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 95.3 36 GTTGAACATTAACATAGAATGTATTTAAAC # Left flank : TTTATGTTTAAAAAAGGCTTTTTAATTGACTTAGATGTTGAACCTAAAACAGATGAGGATATTTGCTTAGAAGTTGCAAAATACTGTGGAAAAGATGGCTTGGCCTTTGAGTTTATTAAAAGAACTCACCTGTAATTGCCATGATTGATGGAAGAAAGTATGAGATTAAAAAGACATATCAAACTGTTAGATTACTTAATTGTTGGGTTTTAAGCTGTAGGGAAATAGACTAAAATTAATTTGGGATAAGAGGTAAAATATATATTTATAAAATGTCTACCAAAATTTATCTCAATAACTTTAGCAAACTACAAAAACATCAATAAATATAAGAAGAATAGGTAGATCCCCTTGATCTATCTATTTTTTATAACTTAATTTATATAATAACCTAAACACTTTTAAAAAATATAAAATACTGGTAATATTAAAATATACCTATTAAAACAGCTCTATTTGAAATATCTAAGTTTTCATAAAAATCTAATAAGTTAAAATGG # Right flank : CTGTTTAAGCTGTAGCTCGTAGTAAGATGATTTGGTTTAAATATTAAAATAGTAGTCTATTAATAGGAAATTAAAAATTATTATGAATTTTAAGTTATCTATTATTAATTATTTTATCAGTGAAAAAGATAGTGAGAATATGATCTAAGTATTGAAATAAGTAAGTTTAAGGGCTGTTATATTTAAGCTCTTTAAAAAATTGAAAAACATTGGTAAAATTATAATGTACCTATTGAAATAGCTAGATTTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAATGGTTGAATAATAACATAAGATGTATTTAAACAACAATTGGATAGTGTCTTTTTCACTGTAGAAGTTACGTTGAACACTAACATAAGATGTATTTAAACTTTCAAGTTCATCTGCATTTTTACAAAGCATATCAAGTTGAACACTAACATAAGATGTATTTAAACAGCTAAATACTTTAACTTTAAAGTTGATGATGTAGAGTTGAACACTAA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGAATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2547-3366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMG010000032.1 Clostridium perfringens strain CP-33 32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2547 30 93.3 37 ......T.A..................... AACAATTGGATAGTGTCTTTTTCACTGTAGAAGTTAC 2614 30 100.0 36 .............................. TTTCAAGTTCATCTGCATTTTTACAAAGCATATCAA 2680 30 100.0 36 .............................. AGCTAAATACTTTAACTTTAAAGTTGATGATGTAGA 2746 30 100.0 34 .............................. AACTACACACACTAAAATACACTCTAAACTTTAA 2810 30 100.0 35 .............................. ACTACCATTCTTTTACTTCCACAATTAGGACAAAC 2875 30 100.0 36 .............................. TAATATCTTCTGTAAGCCTCATCTTCATCTCTATAA 2941 30 100.0 35 .............................. AGTAAAGGAAACTTTACACAGGAGATTGAAGATGG 3006 30 100.0 37 .............................. ATAAAGGCATTTATTTCTTCATCCAATTCTCGTTTAA 3073 30 93.3 37 ................GA............ TGGGAGAATGATTAAAAGTGGACAGCACGGGTGAAAC 3140 30 90.0 35 ........T.......GA............ AGTATAAAATCAAATATTTCTGAACACTCTTCTTT 3205 30 86.7 36 T.......A......G.T............ TGAGTCATAGTTGGAGTTATTTCTGGTTGAGGGATA 3271 30 86.7 36 ........A......G.T...........T GGATTCTCACTTTTAATAGTTTTTTTCTTATGTTGA 3337 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 96.2 36 GTTGAACACTAACATAAGATGTATTTAAAC # Left flank : AGAATGTATTTAAACTTAGCTTTCTTAATATAAATCATTTGACTATATTGGGTTGAACACTAACATAAGATGTATTTAAACGCGATTAGAAATATAGGTAAAAATATTACTGCCATGTTGAATAATAACATGATATGTATTTAAACAAGCTACAGAAACTCTTAATAGTGCTAAAATCTATAGTTGAACAATAACATGGTATGTATTTAAACTGTTTAAGCTGTAGCTCGTAGTAAGATGATTTGGTTTAAATATTAAAATAGTAGTCTATTAATAGGAAATTAAAAATTATTATGAATTTTAAGTTATCTATTATTAATTATTTTATCAGTGAAAAAGATAGTGAGAATATGATCTAAGTATTGAAATAAGTAAGTTTAAGGGCTGTTATATTTAAGCTCTTTAAAAAATTGAAAAACATTGGTAAAATTATAATGTACCTATTGAAATAGCTAGATTTTCGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAATG # Right flank : CAACATAGCTGCTTTAGATTTTGCAAGATTTTCGATAGTTGAACAGTATATTCTATTAATAGGAGGTCAAGCATTATTAGAATTTAAGTTCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAGAATATGATCTAAGTATTGAAATAAGTTGGTTTAAGACCTGTTTTGTTTAAGCACTTTAAAAAATTAAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTCGTAAAAATATAATAAGTTTAAATGGCTATTTTACAATGGTTGAACAATAACATTATATGTATTTAAACAATGTACTTCCAGTTCTATTGCTCATTATCATTCCAGTTGAACAATAACATTATATGTATTTAAACATTAAGAAGAATCAATGATATAATAAATGAAGAAGTTGAACAATAACATTATATGTATTTAAACAAGTCTTGGCTATCATCTTTTATTTTTAAAAGTTTCGTTGAACAATAACATTATATG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACACTAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 3649-4538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMG010000032.1 Clostridium perfringens strain CP-33 32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3649 30 100.0 36 .............................. AATGTACTTCCAGTTCTATTGCTCATTATCATTCCA 3715 30 100.0 34 .............................. ATTAAGAAGAATCAATGATATAATAAATGAAGAA 3779 30 100.0 36 .............................. AAGTCTTGGCTATCATCTTTTATTTTTAAAAGTTTC 3845 30 100.0 36 .............................. CTTAAAATTAACATTTTTATAAAATTTAATCTCTTT 3911 30 100.0 37 .............................. AATGTTCCATATTTTAAGTATTTAACGCTACTAGGAG 3978 30 90.0 35 ........C......A.G............ AGACGATACATCTACAAGTGGAAGTACAAGACAAG 4043 30 86.7 35 ........C......AGA............ GTTGGGCGACAGGACTTAAAGCAACCAAAATTTAA 4108 30 93.3 35 ......T........G.............. GCTATTTTAGTTGTAGGTTTGCCAAGTAAGTAATT 4173 30 96.7 37 ..........G................... GCCAATACTCTATTAAGGTCTTAAATATTTTATTTAC ATA,G [4186,4192] 4244 30 93.3 37 ...............A.G............ AGACACATTTTATCTATTTCAGATCCAAACGTCTCAA 4311 30 90.0 37 ...............AGA............ ATTTTAGGTATAACATCTTTTGACCTAACAACTACAA 4378 30 96.7 36 ...............G.............. TTTTCTCCATTTATTGCTTGTACGATATTAGTAACA 4444 30 86.7 35 ......T.C......A.G............ AGGAATATTAATAACATATACGCTAAGTTACCTAG 4509 30 86.7 0 ........C...A..A.G............ | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 94.3 36 GTTGAACAATAACATTATATGTATTTAAAC # Left flank : TAACATAGAATGTATTTAAACAGTATAAAATCAAATATTTCTGAACACTCTTCTTTTTTGAACAATAACATGATATGTATTTAAACTGAGTCATAGTTGGAGTTATTTCTGGTTGAGGGATAGTTGAACAATAACATGATATGTATTTAAATGGATTCTCACTTTTAATAGTTTTTTTCTTATGTTGAGTTGAACACTAACATAAGATGTATTTAAACAACATAGCTGCTTTAGATTTTGCAAGATTTTCGATAGTTGAACAGTATATTCTATTAATAGGAGGTCAAGCATTATTAGAATTTAAGTTCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAGAATATGATCTAAGTATTGAAATAAGTTGGTTTAAGACCTGTTTTGTTTAAGCACTTTAAAAAATTAAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTCGTAAAAATATAATAAGTTTAAATGGCTATTTTACAATG # Right flank : CAACATAGCTGCTTTAGATTTTGTAAGATTTTCGATATTTGAACAGTATATTCTATTAATAGGAGGTCAAGTATTATTAGAATTTAACTGCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAGAATATGATCTAAGTATTGAAATAAGTGGGTTTAAGGCATGTTTTATTTGAGTACTTTAAAAAATTGAAAAACACTGGTAAAATTATAATGTACTTATTGAAATAACTAGGTTTTAGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAATGGTTGAACAATAACATGATATGTATTTAAACTGTATTATATTTACTTCTATTACATATTCATATATGGTTGAACAATAACATGATATGTATTTAAACATTAGTTGGTAATATGATTGCAAGTATTATGATTCGTTGAACAATAACATGATATGTATTTAAACATTTGTATTCCTTCTACGCTTCTACTTGTCCCCTTATGTTGAACAATAACATGATA # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATTATATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 4821-5376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMG010000032.1 Clostridium perfringens strain CP-33 32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4821 30 100.0 36 .............................. TGTATTATATTTACTTCTATTACATATTCATATATG 4887 30 100.0 35 .............................. ATTAGTTGGTAATATGATTGCAAGTATTATGATTC 4952 30 100.0 37 .............................. ATTTGTATTCCTTCTACGCTTCTACTTGTCCCCTTAT 5019 30 100.0 36 .............................. CTTGTAGGGGGCCATAGATTATGACCGTTATTGAAA 5085 30 100.0 36 .............................. TTTGGATTTAACTCAAATAAAAGTTTGAACTGTAAA 5151 30 100.0 35 .............................. AAACTTTCTTTACATGCATCACATGATACTTTCAT 5216 30 100.0 35 .............................. TGTCCTGTTGATCCATATAAAATCTTATGTGGTTG 5281 30 100.0 36 .............................. GGATTAGGTTTTGAAAATATTACTGTGTACATATCT 5347 30 93.3 0 ...............T.............T | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GTTGAACAATAACATGATATGTATTTAAAC # Left flank : AACATAGAATGTATTTAAACATTTTAGGTATAACATCTTTTGACCTAACAACTACAAGTTGAACAATAACATGATATGTATTTAAACTTTTCTCCATTTATTGCTTGTACGATATTAGTAACAGTTGAATACTAACATAAGATGTATTTAAACAGGAATATTAATAACATATACGCTAAGTTACCTAGGTTGAACACTAAAATAAGATGTATTTAAACAACATAGCTGCTTTAGATTTTGTAAGATTTTCGATATTTGAACAGTATATTCTATTAATAGGAGGTCAAGTATTATTAGAATTTAACTGCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAGAATATGATCTAAGTATTGAAATAAGTGGGTTTAAGGCATGTTTTATTTGAGTACTTTAAAAAATTGAAAAACACTGGTAAAATTATAATGTACTTATTGAAATAACTAGGTTTTAGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAATG # Right flank : TTTATGATTATATTTTTAGTTCATACCTGTCTTCTCTAAGAGTGAACAGTAAATAAAATAGTATTATATTAAAGGAGCTTAAATATTATTAGAATTTAAGTGCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAAAATATGATCTAAGTATTGAAATAAGTAAGTTTAAGGGCTGTTTTATTTAAGCTATTTAAAAAATTAAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTGGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAAGTGTTGAACATTAACATAGAATGTATTTAAACTCTGCATCCTTCGGGAAAAACACTCTCCAAAGTTTGGTTGAACATTAACATAGAATGTATTTAAACCCAGTAACTTTTATCCTTTGAAAAACATGTGATGCCGTTGAACATTAACATAGAATGTATTTAAACGAAACTTCCTTAACTGTTTTTATTCCTTTTAAATCCGTTGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGATATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 5671-6289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMG010000032.1 Clostridium perfringens strain CP-33 32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 5671 30 100.0 35 .............................. TCTGCATCCTTCGGGAAAAACACTCTCCAAAGTTT 5737 30 100.0 36 .............................. CCAGTAACTTTTATCCTTTGAAAAACATGTGATGCC 5803 30 100.0 36 .............................. GAAACTTCCTTAACTGTTTTTATTCCTTTTAAATCC 5869 30 100.0 35 .............................. TTATAAGCAACATCATAATCACACATATTATATTT 5935 30 100.0 36 .............................. TATGTATCACCTCTATGCAACTATTTCTAAAGCTTT 6001 30 90.0 36 ........C.......AG............ TAAGTTTTTAATTTCTTTATATAAGTTGCTACTGTT 6067 30 90.0 34 ........C.......AG............ TTATTAAAGAAACTATAAAGTAAGATCCTAAAAA 6131 30 90.0 35 ........C.......AG............ CCTAATCTTTCTTTCTTAGTTTCTTTTCTGTGTTT 6196 30 90.0 34 ........C.......AG............ TTTTTTACAGATTTATAAATTTTTTTTGTTTCAT 6260 30 86.7 0 ........C.......AG..A......... | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 94.7 35 GTTGAACATTAACATAGAATGTATTTAAAC # Left flank : GTATTTAAACAAACTTTCTTTACATGCATCACATGATACTTTCATGTTGAACAATAACATGATATGTATTTAAACTGTCCTGTTGATCCATATAAAATCTTATGTGGTTGGTTGAACAATAACATGATATGTATTTAAACGGATTAGGTTTTGAAAATATTACTGTGTACATATCTGTTGAACAATAACATTATATGTATTTAAATTTATGATTATATTTTTAGTTCATACCTGTCTTCTCTAAGAGTGAACAGTAAATAAAATAGTATTATATTAAAGGAGCTTAAATATTATTAGAATTTAAGTGCTCTAGTGTTAATTATTTTACCAGTGAAGAAGAGAGTGAAAATATGATCTAAGTATTGAAATAAGTAAGTTTAAGGGCTGTTTTATTTAAGCTATTTAAAAAATTAAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAACTAGATTTTGGTAAAAAGCTAATAAGTTAAAATGGCTATTTTACAAGT # Right flank : CTGTTTAAGCTATAACTAGTAATGTGTGCTTTGGGTTGAATATTAAAAGAATAGTCTATTAATAGGAACTCAATAAAAATAGTATTATCAAATTTAATATGATCTAGTTTTAATTATTTTACCAGTAAAAAAGATAGTGAAAATGTGATTTGAGTGTTGAAATAAGAGGGGCTAAGGCCTATTTTGTTTAAGAACTTTAAAAAATTAAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAGCTAGGTTTTCGTAAAAATCTAATAAGTTAAAATGGCTATTTTACAAGTGTTGAACAATAACATGATATGTATTTAAACAGCAGTAGATAAAGTTTTAGAAAAATATCCAAGCTGTTGAACAATAACATGATATGTATTTAAACTGCCTAGGGCTAAACAAGTATCTGAATATATTCCTAGTTGAACAATAACATGATATGTATTTAAACATTTTAGCGGATATTGAAGGTGTAGTTACAAAAACAGTTGAACAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAGAATGTATTTAAAC # Alternate repeat : GTTGAACACTAACATAAGATGTATTTAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 6 6583-7271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMG010000032.1 Clostridium perfringens strain CP-33 32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6583 30 100.0 35 .............................. AGCAGTAGATAAAGTTTTAGAAAAATATCCAAGCT 6648 30 100.0 36 .............................. TGCCTAGGGCTAAACAAGTATCTGAATATATTCCTA 6714 30 100.0 36 .............................. ATTTTAGCGGATATTGAAGGTGTAGTTACAAAAACA 6780 30 100.0 35 .............................. TAGTTTCTGAAAGCATGATTACTTATATCTTTACT 6845 30 100.0 35 .............................. AATAGCAGTTAGTAGGAACTCTTTAAAGGTTGAAG 6910 30 100.0 35 .............................. GCTATTTTAGTTGTAGGTTTGCCAAGTAAGTAATT 6975 30 96.7 37 ..........G................... GCCCATACTCTATTAAGGTCTTAAATATTTTATTTAC TGAT [6989] 7046 30 90.0 35 ........C......A.G............ TTATAATTTAAATATTCCTTTGCAAATTCTAAAGC 7111 30 93.3 36 ........C........G............ GTTTTACTATTACAAACGGTTACTGTAGCCCCTTTA 7177 29 93.3 35 ........C........-............ GTATTAGCACCATTACTAAGTGTTTCAAATATGGA A [7192] 7242 30 76.7 0 A..............TCA..T..C....C. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 95.5 36 GTTGAACAATAACATGATATGTATTTAAAC # Left flank : AGATGTATTTAAACTTATTAAAGAAACTATAAAGTAAGATCCTAAAAAGTTGAACACTAACATAAGATGTATTTAAACCCTAATCTTTCTTTCTTAGTTTCTTTTCTGTGTTTGTTGAACACTAACATAAGATGTATTTAAACTTTTTTACAGATTTATAAATTTTTTTTGTTTCATGTTGAACACTAACATAAGATATATTTAAACTGTTTAAGCTATAACTAGTAATGTGTGCTTTGGGTTGAATATTAAAAGAATAGTCTATTAATAGGAACTCAATAAAAATAGTATTATCAAATTTAATATGATCTAGTTTTAATTATTTTACCAGTAAAAAAGATAGTGAAAATGTGATTTGAGTGTTGAAATAAGAGGGGCTAAGGCCTATTTTGTTTAAGAACTTTAAAAAATTAAAAAACACTGGTAAAATTATAATGTACCTATTGAAATAGCTAGGTTTTCGTAAAAATCTAATAAGTTAAAATGGCTATTTTACAAGT # Right flank : CCTAAAGACTACGTAAAAAATATTTTACGTAGTCTTTTATTTTTTTCCTTAACAGAGCTTTTTATCTAAAACCTTCTACATTTAATTTCACTTAAATTTAATCTAAGGTTTGTCCCTCTCTTTTTTTAGATTAATTTTTTATAGAAGATTAGTAAGGTTGCTTGGTAAAATAAAGGATTTAAAGTATTATTTTAACAAATTATGAATTTATGGTAAAATATTATTGCGAATAAAAAATAGAAAGGAAGGTGTCGCACCTTGGGGAGTTTAGTTTTATGGGAATTAGGTAAAAAACAAACATATATTTTTAATAGTAACAAGCTTAAGGATGCCATAGGAGCTTCACTTATTATTAAGGATTTTTCAGAGGATTATTATAATGATCTTTTAAAGGAAGAAAATTTTATAACAAGAGGTGGAGGAAAAACTATTTATTATTTTGAGAGCAAGGATGAGGGGAGGGAGTTCATTAAAAACTTAAGTTTTCATATTTTAAAGAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGATATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //