Array 1 273453-274700 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXL01000002.1 Streptomyces kasugaensis strain BCRC 12349 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 273453 29 100.0 32 ............................. GGGGATGGGGCGACACCCGCCAGGTGCGCTGG 273514 29 100.0 32 ............................. ATCTGGGGCGCGGTCGAGGAGCTGGATTGGGT 273575 29 100.0 32 ............................. TGAGCGGCGAACAGCAGCTTGCAGGCGCCGCG 273636 29 100.0 32 ............................. CCGGCGCTGCGCACCGCCGAGGGCCGCCAGGC 273697 29 100.0 32 ............................. TTGGCGTCCGGCTGAGTGCCGAAGGTCTCGGC 273758 29 100.0 32 ............................. CTGGGCACCGCGTGCAGCGTCCGCTGCTACGA 273819 29 100.0 32 ............................. AAGTGCTGTCGGCGAGTCGTCGATAAAGCCAC 273880 29 100.0 32 ............................. TGGACACCACCGACTGGCCCACCGACGACATC 273941 29 100.0 32 ............................. CACGCGGGGCGTTCACCCGGCTGCGGGCTGGT 274002 29 100.0 32 ............................. GCGTCGCAGCTGAACAGCCCGCCGATGTCGTC 274063 29 100.0 31 ............................. AAGGCGGCAGTGCGGGAATCTTCCAGAGCGA 274123 29 100.0 32 ............................. GCGTCGCAGCTGAACAGCCCGCCGATGTCGTC 274184 29 100.0 31 ............................. AAGGCGGCAGTGCGGGAATCTTCCAGAGCGA 274244 29 100.0 32 ............................. AGGCTGTGCAGCAGCTCGAATTGACGATGTGA 274305 29 100.0 32 ............................. AATGAATCCGCAGGTGAATCCGCATCGGGAGG 274366 29 100.0 32 ............................. GAGTCCAGGGCCGCGCAGTGCGACGCGCAGGC 274427 29 100.0 32 ............................. TCGCCGGGCTCGGCGTGCTTGTCTGACCGAGG 274488 29 100.0 33 ............................. GCGATGGTGGCCGGGGCGAGTTCAGACGATTCA 274550 29 96.6 32 ...............A............. GCCCAGTAGGACACCCACCGGTGGACACCAGG 274611 29 100.0 32 ............................. GTGACCCAGGACCCATCAGGCAGCACGGTGTA 274672 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GTGGTCCCCGCGGGTGCGGGGGTGGTCCC # Left flank : TGCCCGGTCGCCCTGCGCGGTCTGCTCACCCGCTGGCTCCTGGAGATCTCCCCGGGCGTCTTCCTCGGCGCCCCCTCCACCCGCATCCGCGAGTCCCTGTGGAAGGAAGTCCGCCAATACGCGGGCCAGGGCCGCGCCCTGCTCGCCTACCAGACCAACAACGAACAGGGCTACACATTCGAAACCCACGACCACTCATGGCACCCCACCGACCACGAGGGCCTGACATTGATCCACCGCCCGTCCCCGAAGACTCAACGCCCGGCGCCACGGGCATCGGATGGGCCGACGCCGGATGTTCCACGCCAGGGCTGGAGCAAGGCGTCCAAGAGGCGGAAGTATGGGGGGCGGTAGGAGGGCTAGGTGTCGGGCTGGGGGAGGGTTGTGGGGGGGCGCGCTTTCCTCGTTGTCCGCGAGGTGAGGAGGTGGGGGGTATGTCGGAATCTGCGGAAGTGAGTAAAAACGGCCGCGTTGCTGGTTGAAAGGCCAGGTCAGGGCTT # Right flank : CTGGCACCAACGCAGGCCGAAGCCCCGCCCGCTGTGCTTGAACGGAACGGCACCGGACGGGGCGGCAGCCATCGGGCGTCAGATGGTGAAGCGCCATGAATCGTCGGGGGTCAGCAGGTGGCTTCCGTCGGGGGAGAGTTCCGCGCGCATCGAGTGCAGAGAGAACCTGTTGTTCTCCTCCCACCTACTGCGGACACGTTCCAGGTCATCCCACAGTCGGCGGGGGCCGCCCTGGTGCACCAGGGGCGACGTTCCGTCCTCGGCTCGGGCCCATGCCCCGTCCGCAGCGAGCAACCACACCACGCGCCGCCCGTCGTCCGGGTAGGTAGCCGCGCGGGTCTCGACCCCGGGCGTGTGCAGCTCGAACAGCCACCGGAGCGGCCATTCCTGCCACAGGTCGGGAATGGATCCCTCGGGGGGCCGCACGTCCTCGCCCTCCCGTACGCGGGCAGTCACGAACACGTCGTTCAGCTTCGCCGGGTAATCCGCTTCCTGCCGGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGGGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 773255-773526 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXL01000002.1 Streptomyces kasugaensis strain BCRC 12349 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 773255 29 100.0 32 ............................. CCGCTCGCGGACGCCGTGCTGAGAGCTAAGCG 773316 29 100.0 32 ............................. GAGCCGGCCCCGGCCCCGCAGCCGCCCCTGGA 773377 29 100.0 32 ............................. ATCGCCAGGGATTCGCAGAGCCGCACGGTGTA 773438 29 100.0 32 ............................. GGCGGTGGCCAGTCCGGTCAGCTCACGCAGAC 773499 28 89.7 0 ..............C.....A...-.... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 CTGCTCCCCGCGTGTGCGGGGGTGACCCC # Left flank : GCGAGGTTCTGAACGTGCAATGGCCCGACGGCGCAGAAGATCATTTCCAGGCTGGGCGTGTGGAGTTGACCGTTCTCAACTCGTCTGACCCAGGAGGCCGACATGCCGATCAGTCCGGTGAGGACCGTTCTCGACACGCCTCGACATTGGCGCAGGATCTGCATTCTCTTCCCAATGCACCGGCGGTGTGGCGTATGGGTCGGGGGCGTCTTCGGCAGGCGCGGCCTCCCCCCTCTCTGAACAGCTCGGCACTGTCAGGTATGGGCGGGGCCGGTTTCGCGCTTGAATCTTTTGTCGGGGGACTAGGCAGGGCGATACGGCTGGGGCGACACCACGCTCGGCGCGTGGTGTGGCGGGGTTGCTGACGCTCCCATGTCCGGAATGCCTGAATCGATGAAAGTTGCTGAAACTCGTGGCCGGCGACGGTAAAGTCCCTGGTCACGTAGCCTGCTCCCCGCGGGTGACCCCGTGGAACGTCAGGCCGGTGCCGTCCGACGCCT # Right flank : CTGCTTCACGGTGGTGTCCACGAACCGCTCGGGCCCCTCCCCACGTACACAGCCCGCCGCGCCGCGCACCGCCGCCCTGCCCGCTCACACCCCCACCCCCACCCCCAAAGCCCGCTTCCCCAACGAACACCACCCCCGCCCCAACGCCCCCTCCCCGCACAAGCCGCCCCTCCCCCCACAAGCCGAATCCAGCCAGATACCCGCCACCCGCACCGCCAACCCCCCGCCCCCGGTGGCCGGAATCCGCACCCGTGAGGGCCGGAAGTGGCAGAAGTCGCAGAAGCTGCCCGTAAGCGGTAAAGAACACGCCACAAGGGGCGTGACATGCCGATTGGTATGCACCGAGAATCGCAGCACCACTACCCGCCCGTAACATGCGGAGGCACCCGGTGCTCAGCACGATGCAGGACGTACCCCTCACGGTCTCGCGAATTCTGACCCACGGCTCAACCGTTCACGGTGGGTCGGAGGTCATCACCTGGACCGGTGAGGGCGAGCCG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGTGCGGGGGTGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 149607-149273 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXL01000001.1 Streptomyces kasugaensis strain BCRC 12349 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 149606 29 96.6 32 ............................T GACATAGTTACCTACCGCATTCGATAGACCGA 149545 29 96.6 32 ............................C GCGCCTACGGCGACTTCCCGCACGAGCGAGTG 149484 29 100.0 32 ............................. CTCCGGGACGAGGCCCGGGTGGCGAACGAGAT 149423 29 100.0 32 ............................. ATCGCGCGGGCTTCTTCCTTGGTGGGTCCGGT 149362 29 93.1 32 ..............C......A....... AGCATGGTGCGGCGAGACGGCGCCCGCGCCCG 149301 29 93.1 0 .....................A......C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTTGTCCCCGCGCCTGCGGGGGTGGTCCG # Left flank : CGTCCGAATCCCCTTCCCTCCGTTGGGTCAAGTCGAGCTACAGCGGCAGCGGCGGTACCTGTGTCGAGTGGTCACCGATCACCACCGCCGTGACCGGCGCTGTCCCCGTCCGCGACAGCAAGGACCCGCACGGCCCCGTGCTCAGGATCGCCCCGGCCGCCTGGTCCACGTTTGTCGGCAGCGTCAAGACGGGCGAACTGTCTGCGTAGCCGCTACTCGTCCCCTCCGGCTTCCCGACGGACGGGACGGGGGACGAGAAGAGCCCCGCCGCCCACGAACAGGGCGACGGGGCTCCGCCTTTGGGCTCCCATGTGTGGTGACGGGGCAGACGTGCAGAACGGTTGGTTGAGAGCGTTCAGCGAACAGGGATGGGCGGTGCCCACCGCAGGCCGTGACCGCTGGCAACCCGTGGACTTCGACGGACTGATCCTCTCGGCCCGCCCAAAAAGCAACTGAATGAAAACGGCCACCCCACCCGGTAAAGTCCCAGCTCAGGAAGT # Right flank : GCGAGCGCGTCGCGAACGTCGTCGACCCAATCATCGGCCCCGCGCCTACGAACGCCCCAGCGTCACCGTTCCGGAGTGATGCGCCACGGCAGCAGCAGGCACCGCAGTTTTCAATGTCCAACGCGTGAGCAAGGGGCGGACCAGGACCACGCGCCGTTGCCTGGCGGCTCCGCGTGGCCCTACCGGCCAAGGAACCACGCGACGGCGGAGAGCGCGGATACGACGGTGGCGTGGACGGTTCCGGGGAGCGCACCGGGGACGCGCCGCACAGTCAAGTGCAGCCCCCGATAGAGGAGTTCGAGTTCGGGAGTGCTGGCTTCGTTTCCTTCGCTCTGCATGGGTTCACGCCCCGTGGCAGGAAGGGCGGCAGCAACGGGGCTCGGCGTGAACTTCGTGAATCTTGCGGGCTCTCCGTGAAAATCCGTGAATCAGGACCTTCTCTGTCCGCTGCGCCCGTATTCCGGCGCATGAGGGTGCGCCGCTTGCTCCCGGGGCGGGAG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCGCGCCTGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 757209-756445 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXL01000001.1 Streptomyces kasugaensis strain BCRC 12349 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 757208 29 100.0 32 ............................. TGCACGACGGCGTCACCGACACTGCGATCGAC 757147 29 100.0 32 ............................. GCCGCGACGTTCGACGCCGCGAAGTGGATCGA 757086 29 100.0 32 ............................. TCGCCGAACACGTCGCGGAATCCCTCGGCAAG 757025 29 100.0 33 ............................. TGGTAGCGGCGCGGGGTGGTCATGGCAGCCTCT 756963 29 100.0 32 ............................. ATCCGGCGCTACGACTAGCCGGCACTCCCGAG 756902 29 100.0 32 ............................. CCGGCCGGGAGCATCTGCGGGACGTTCATGTG 756841 29 100.0 32 ............................. GCAATCGCCCAGCGGATGAAGGAAGAATGCAG 756780 29 100.0 32 ............................. GGTCTGCGCACGAAGCTGCGGGGCCAGGCTGT 756719 29 96.6 32 ..............T.............. AGGCGGGCGATGGCCCAGGCCGGCGGCTCGAT 756658 29 96.6 32 ..............T.............. CCGAACGCCACGGCGTGCGACAAGTTCGACGT 756597 29 96.6 32 ......................C...... ATGTCGCTGCTGAAAAACCAGCAACGGCAGGC 756536 29 96.6 33 ............A................ CTCTGTGACACCCACTCCATGCGGGCCCGCACC 756474 29 86.2 0 ...........C..G.T.....C...... | G [756453] ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.9 32 GTGTTCCCCGCGCACGCGGGGATGGTCCC # Left flank : AATCGGAATCCGAGGTCGGCCCAGGGGGCTGGCATGGCATGGAGTAGAAGCGACCGGCACGCCCAACTCCCCTCCGGCTGAAGCGTGATTAGGCAGCGCATCCTCGCCGGAGACGGGCCGTCAGTGTCATCGTCATCGCGGGCGACGGCGGACGCTGCTCTGGGACCACTGCTCTTGGCATCGATCACACCGGCGATGCGATCGATCGCCGCGACAGCAACCTTCAGGTGCTCTGCTGATCAGAGCCGAGTTCGGAGGCCCTGTCGCTACTGGGTAGCCGATGGCGTGAGCGGTTGGCGGATGCCTTCTTCCGGACGTCTCTCTGGATGGGGTGGAGGTAGTGTCGATGTATGTGGATTCGGTTGGCTCGGGCTCATCCACTCGACCGGTCAAGACGAGCGGGGGAATGCCCGCATGTGTCCACTATGTCTTATTGGTCGGACTCTGTGAAAGTACCCAAAATCCGCGCTGGACCGAGGTGAAACCGCAGGTCGCGCCTT # Right flank : GCGATGCAGGAAGTGCTCAGCGACACGCGCCTGGGCAGTGGCGCCGCGCACCACAGCATCATCCGTATCGTCTTCGGAATCGGCAGCATTGAGTTTCCAGTACCGGCCGCCCGCTTGCCATATGCGTCCGGCGCCGTCTGTATGTGGAGGGGCGAGCGCCGTGCACTCCCTCGGGCGCTCTCGCGCGATCTCCAGCTGCCTGCTACGTGGGCAATTTACTGACCGCGGATCGCAGCTATACCCCCAGAATGACCGGGCGATCAAGGACCGGCTTCTGCGTTGCTTGCGTGATTGACCGGGGGACGGAAGGTAGACGATCTTGCGAAACCGGGCCTTCCTGGTGCCCGATCAGAGCTGAGCTCGTCCGACTTCGAGGGCCTTGCAAGACCCGCACAACCGGGTTATCACCCCGCCGATTCGCCCGCGTCGGCGCTCAGTACGCCCGCTCCGACCAGGGCGAACAGGGCGATGCCGAGGAGGATTCGGTAGATGACGAAGGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4163177-4163451 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXL01000001.1 Streptomyces kasugaensis strain BCRC 12349 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4163177 29 100.0 32 ............................. CCAGCGACGTGGGCCAGCACCGCGGCGGCGGC 4163238 29 100.0 32 ............................. GTCGGGCTTGCGCTGCCGGGCCAACCACTTCC 4163299 29 100.0 32 ............................. CGTACTGACCAATGCACCAAGACGGCTGATCC 4163360 29 100.0 34 ............................. ACCGCCCACGCCGTTCTCATCGCAGCACTCGCGT 4163423 29 82.8 0 ...T.........CC........AC.... | ========== ====== ====== ====== ============================= ================================== ================== 5 29 96.6 33 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : CCGCTGCGCGGAAGACGGGACCCAGTGCGCGGACGAGAAGCGCATGGAGGAGATCGTCAAGCTCGCTGCGGAGAAGAAGATCGGGATCGGGGGGCCGGACATCCTGCCGGACAGGTATTACCCGACGCAGAAGTCCTACCAGTTCATCGAGAAGTACAAGAAGCAGCTCCCGGTCGTCGCCATGGCGGTCCAGGAACCCACCCTCAAGTATGAGGATCCCAAGAACCCGGGCCACCTCTATACCCGGGAACGATTCACGGACTTCGCGCGGGACACGCTCGGCGCCGGTTCCATCTTCTGGACCGTCGAGGCGGACTGGCTGAAGAAGCCCGCGATGTGATGGATGGAGTCCTGGCATCAGTTAATAGGGCGTGAGCTGCGTTCGAGGGTGGAGGCGAGCGGTAGTGGGCGTCCATATGTCTGCTACGTCTGATTGGCCGAACTCTGTGAAAGTGCTCAAAAATCGCACAGGTCCACGGTAAAGTCGCAGGTCGCGCCTT # Right flank : CCGCTGATTCCCCGCGAACCAGCCCCATACCCCCACCCAAGAAAGAGCGGCACCACAACGGCACCGCCCCTCCTCGTACGGCACCGCCCCTCCTCGTACTACCGCTCCCCCCTACCGCCCACCCCCGCCACCATCCACACCCGCGCCGTACCTCAGACCACCTCCCGGCTGATCGGCAGGGGGTTGGGGGCCAGGTCGCGGATGCGGGGCCGGCCCGGCTGGTGGAGGAACAGGGTCAGGGCGGCGGCCGCCAGGGAAAGGAAGCCGGCGAGCAGGTAGGCGCCGCGGTATCCCCAGGTGTCGACCGCCATCGAGCCGAGGCCGCCGCCGAACAGGCCGCTGACGAGCTTGCCGCTGTAGGCCAGGCCGTAGTTGGAGGCGTTGTAGTTCTCGCCGAAGTAGTCCGGGGTCAGCGTCGCGAACAGTGGGTAGAAGGCCCCGCCGCCGAATCCGGAGATGAACGCGAAGACGAGGAAGAGGACCTGGTTGCGGGTGTCGCC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1671580-1669355 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXL01000003.1 Streptomyces kasugaensis strain BCRC 12349 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1671579 29 100.0 32 ............................. AGCCTGTTCAGCCTCTCGGCCGGGACCACCAC 1671518 29 100.0 32 ............................. AACCCCTGCTTCTCCTTTGGCGCTTCCGCCCC 1671457 29 96.6 32 ............................T CTTCTGGCGGTAGTGAGCGGCGATCTCGGCAT 1671396 29 100.0 32 ............................. CCGGAGCCCGTGGAACTGCCGGAGGACGTGCA 1671335 29 100.0 32 ............................. GACGAGTTCGGAGACGGAGACCACGACCCGAG 1671274 29 100.0 32 ............................. CCGCTGAACGCCCGTCAGAGCTCCTAACGCCA 1671213 29 96.6 32 ............................A GAAGTTCCTGGTCTACGAGCGGCCGGCGGTGG 1671152 29 100.0 32 ............................. TCGCCCCGCAGGTGGGCGGTTGCCATCAGGGG 1671091 29 100.0 32 ............................. GCGGGTGGCGACCGCGTGGAAACCTGCTTTAC 1671030 29 100.0 32 ............................. CAGGTGGGGCAGCCACCCCTGGGCGACGGCGT 1670969 29 100.0 32 ............................. GTCTCGGCGGCGGCCGTGAACACCGCGAAGAA 1670908 29 100.0 32 ............................. GCAACAACGGCTTCGGGGCGTACTTGGTGGCT 1670847 29 100.0 32 ............................. GCAACCGCCTGACGGCTTATCTGGCTGGTCTC 1670786 29 100.0 32 ............................. CCGTTTTCGGTGTGCCGGACCCGGGACGGGTC 1670725 29 96.6 32 ..................A.......... TCGAGGCCCGTGAACACATCCGCGTGAGCGGC 1670664 29 100.0 32 ............................. CTCACTTTCGCCCGCCTTGGACAGGCACAGGG 1670603 29 100.0 32 ............................. ACGAAGCGGCGCCAGACCACTGGGCCGAGCCG 1670542 29 100.0 32 ............................. CACATGAAGCCCCGGGGGCGGCCGTCTTCGCC 1670481 29 100.0 32 ............................. GGCGGGGAGACCGGCTGGACGGTGCCGTCCTC 1670420 29 100.0 32 ............................. GAAGAGAACGGCGTTCAGAGCAGCGTCGCGCT 1670359 29 100.0 32 ............................. TAGTCGGCGTCCCAACGGCCCGTGCGTGGACC 1670298 29 100.0 32 ............................. CCCGCCTTACCGACACATCCTCCCGCCGCCGC 1670237 29 100.0 32 ............................. TACACGCGGCTGGACGGCGGGGGCGGCGCGGT 1670176 29 100.0 32 ............................. AATGGCAGTCCTACCGCGCCCTGTATGCGAAC 1670115 29 100.0 32 ............................. GAGATCGACGATGCTTTCCGCCGACAGCGCGG 1670054 29 100.0 32 ............................. CACTGGAAGTCGCTGACGATCCTCCGTCCCGA 1669993 29 100.0 32 ............................. GAGGCCAACATGCTCACCGCCATCGTCGCCGT 1669932 29 100.0 32 ............................. TTCTCGGCGCACGGCCCGGACGGCGCGTCGGT 1669871 29 100.0 32 ............................. GGGGTTGAGCTGCGGGTCAAGGGGTCCGGTCA 1669810 29 100.0 32 ............................. GTCAGCGAGTCCTTCCCGCGCCGCCCCGGCCG 1669749 29 100.0 32 ............................. TCAAATCCCCTCCGGCGCCACCCATTCGGCTG 1669688 29 100.0 32 ............................. CCGCGCGGGACGACGGTCCTCGTTCGGCGCAG 1669627 29 100.0 32 ............................. GCCCAGTTCGTCGAGTAGCGGGAGAGGCGCTG 1669566 29 100.0 32 ............................. GCAGTTGAGCTTCGGGTACTGGCTGCCCTTGC 1669505 29 100.0 32 ............................. TCGACTATCAACCGCCGCATGATCACGGGGCT 1669444 29 100.0 32 ............................. CTGCTCACCTTCTACGACGGGTCGGCCTGGGT 1669383 29 93.1 0 .............G............T.. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.5 32 GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Left flank : CCCGACAAACGGGCCGTGGAGCTGGATCGCGAGGCGGTGGCTCGCCGGCATGAGGTGGCCAGACACCGGCGAAGTGCCCAGCTACCACAGTGAAGGACACGACGGTGCGCGAGGTCCTGGGCCCCGCCGACCCGGTTCACCTCCGCCCGCGCGGAGAGCACCTGACACGGCACTCCCATCACGTACGCAATAGAACTGCCACAAGAGGTAGCACCCGGCACTGACAACGGACGCGTACCCGACCGCCCGGCGAACAGCCGCACCTCGACATCCCGGACATCAGGGGCAGCAACCGGGCATCTCCACGAGGAGCTTTGGGACAGATTGGCTGCGTGCTGTGCCGCCCCGACCGGGGCGGGCACCGCAACCGAGACCTTCCGGGCCGCCGTACCCATCGTTCGGAACCCGGCTTCGAACACGATAAGTTGAGCCGGGTGGTCAGCCCTTGCTCTTTGATTCAAAGAAAAGCAAAGTCGCTATAGAGTCGCAGGTCACGAAGG # Right flank : GATCGCTTGAGAGCGAGGACGCACAAGTGCTCTCCGCACGGGCACGGCTGCGGGCCGATCTGCTCCATGGCCCTCCCGGGCGTGCCCGAGGTGATAGCACTGGGGGACGATGAGTTCGCTTTCCGCCCCGGTCAAAGCTACGGCGTCATCTTGAACGGCACGAGCATCCACCGGCCGTCGGCGTGCTGCCCGACCGGGCCCCTCATGTCCCCAACTCGTCCTGCGCGGTCCGGATTCTCCCCGCCCTTCAGTGGCAGCTCGTGCTGACGGTAATGCCCTCAAGGCAGTGGCACGGGGGGTGGCTCTTCCGGTCCGTGGGGATACTGCTGGGCCGCATCGAGCATTCGACGTCGGGCACCGTACGGGCTCGTGGGTCTCCGTGTGTGGGGCGGCTCCACGGTATTCGTCGCGTCTTCTCTTTGGTGTGGGTCAGATGTGCTACGGCGTGTGAGTTCGGCGCGCAGGCCGGCTTCACGGTGAGCGGCCCCGTGGGCCGTGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1718678-1716818 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXL01000003.1 Streptomyces kasugaensis strain BCRC 12349 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1718677 30 96.7 31 .............................G CTTGGAGGGTGGCGTCCAGTGTCGTGTGGAC 1718616 30 100.0 31 .............................. GGTTGCGAGGTTCCAGCCGCACGTGGTGCTG 1718555 30 96.7 31 .............................A TGTCGGCCTTCTTGCCGGTCTTCGCGGTGTC 1718494 30 96.7 31 .............................G CGGCCGGTGACCTGGTGGCGCTCGGCGCGTA 1718433 30 96.7 31 .............................T TGGACATGCGCGGATGATGGGCACCGGACCC 1718372 30 96.7 31 .............................T CCACGGTGTCGTCGGCTGTCGGCCTCTCGAC 1718311 30 100.0 31 .............................. CGCCCCGCCTCCCCCGCCGCTGACCCCGCAC 1718250 30 96.7 31 .............................G GCGTGGTCGGCATGCCCGTCTACATGTGGAC 1718189 30 96.7 31 .............................G ATCCGGCAACGCCCGCCCGGGAGGCCCCCCG 1718128 30 96.7 31 .............................T GACCGTAATTCCGAGGGGGCTCGGTTCGCCC 1718067 30 100.0 31 .............................. TGAGGCCGTGCGCGTGGTGCGGCGCGGAGAT 1718006 30 96.7 31 .............................A CATTCGCGTCGAGGTCGGTGGCGAACGTCTC 1717945 30 100.0 31 .............................. CGATCACACCGACGGCGAGCGTCAGGACGAT 1717884 30 100.0 31 .............................. GGCATGCCGCCCCAGGGACATCTACCCGCGC 1717823 30 96.7 31 .............................A CGAACGAGGCGCGGTCGTTGGCCCCGTGGCG 1717762 30 100.0 31 .............................. GATCTTGAGCTAGTGAGTGCCGGTGGGAGCG 1717701 30 96.7 31 .............................T TCACCATCGGCGGCGCCGCCGTCCGGTGCCC 1717640 30 96.7 31 .............................T GGTGTGCCAAGGTGCGCGAGGCGGAGCTGCC 1717579 30 96.7 31 .............................G AGTCGGCTTCGTGATCCTCCTGCCGCCACAC 1717518 30 96.7 31 .............................G CACTCGGGGCAGAGCGCACCGCCGGGTGAGT 1717457 30 100.0 31 .............................. CCCGGACCGGCCTGATCTTTGGACGGACTGG 1717396 30 100.0 31 .............................. CGCACCGGTGGACGCCGGGGGACACCCCGGC 1717335 30 100.0 31 .............................. AGGCCGTGGGCCACCTCGCCGAGCGGATCGC 1717274 30 96.7 31 .............................G CCATGCCCAGCAGGCGTTTGCTGGGCCGGGT 1717213 30 96.7 31 .............................T GGGGCATCACGGTTGGTGGGTGGTGAATCGG 1717152 30 96.7 31 .............................T GCTACTTCCGCACCAACTTGCTCGCCGGATC 1717091 30 100.0 31 .............................. CGACGGCACGCCTCCGGGTGTGGGCAGCTCG 1717030 30 96.7 31 .............................G TCGGCGTCGGCGGCGCCATCCTCGGCCTCGT 1716969 30 90.0 31 ...C.........A...............G ACACCGTCTTGCCGCTGCGCCTGGCCGTGCA 1716908 30 93.3 31 ...C.....A.................... CGCACTCGCCGATTCGAGGTGGGCGTCGCCG 1716847 30 86.7 0 ...C..G.....................CG | ========== ====== ====== ====== ============================== =============================== ================== 31 30 97.1 31 GTGTTCTCCGCGCGGGCGGAGGTGAACCGC # Left flank : CCCCATCGCCGCCGCCAGCCGCTCGCGAGCCGAAGACGTAAGAGTCCGATCCCATAACGCGCCAGCTGTCGCCGCCGTATCCAACAAATGACACACCACCGGATACGAACGCGGCAGCCCCTTGTCCTTACCCCAAAGGCGCGCATCGACCGCCTCACCTAACACGGCACTCCCATCACGTACGCAAAAGAACTGCCACAAGAGATAGCACCCGGCACTGACAACGGACGCGTACCCGACCGCCCGGCAAGCAGCCACACCTCGACATCCTGGACATCAGGGGCAACAACTGGGCATCTCCACGAGGGGCTTTGGGGCAGCTTGGCTGCGTGCTAGGCCACCGGACCGGGGCGCGGGGCACTGCAAACGAGACCTTCTGGGCTGCCGCGTCCATCGTTCGGAACCTGGCTTCGAGCACGGTAAGTTGAGTCGGGTGGTCAGCCCTTGCTCTTTGATTCAAGGAAAAGCAAAGTCGATATAGAGTCGCAGGTCACGAAGGG # Right flank : AAACTTTTACCTTCTTGACCTGTGAAAACGCCGGAGAGCCAGGACAAACACCCCGGTTTACACCCTGCTGAATCTTACTCGATCCTCCTCGATCCCGGTGCCGTGCTGACATGTCAGCACGGCACCTAGGGTCGTTGCAGACGGAACCCACCAGCACCACAGCGTGGCGCCAGCCAGGGGAAAATCGCCTCCCCCAAAGGGGATTTGCATTTCGCGCAAAGATTCCACCGCATCCAGCATGAATGGCCATACTCGACGCCAGGCCGACGTTGGTGTGCCGTCAAGGTCCCGCCTCCCGCAGACCGCAGCCTGCCCTGGGTCCTGTTCACTGTCGCAGTGGGCAGCCTGTAGTCCAGCGCTCACGCCCGATGGGACGTCAGCAGTGTGCCGGATGAGCGCCTCGGGTCCTGGGGCGGCCATGCGTACCTCAGCGCAGCAGGCTGAAGACGACGGCAGCGACTCCGGCGCCCGCCACGGCGCCAGCCACGACCTGGGCGAGG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCGCGCGGGCGGAGGTGAACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1728477-1730457 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDXL01000003.1 Streptomyces kasugaensis strain BCRC 12349 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1728477 29 100.0 32 ............................. GCGTACGCCGAGCGTGAGGGCCACGCCCGGGT 1728538 29 96.6 32 ............................A GCCGCCCGATCCGGCTGGCCCCGTTGTCGATC 1728599 29 100.0 32 ............................. AAAGATCGGTGCCGCCGCCGAGGTTGTAGACC 1728660 29 100.0 32 ............................. TGCCGTTGCGCCGCGCCGTGATGCCCGGCATC 1728721 29 100.0 32 ............................. TCATCAGCAGCGGCAGTGGTGGGACGGCCACA 1728782 29 100.0 32 ............................. CGCTACTGGTAGCGCTAGAAGTCTACGTAGAC 1728843 29 96.6 32 ............................T TGGGATCACCGTGCGGCGCAGTGGCCTCGGCC 1728904 29 100.0 32 ............................. CGATACCCGCGCCTTGGAGGTACCTCATTTTC 1728965 29 100.0 32 ............................. TCGAGACCGCGCTCGGCGTCTCGAACGGCACG 1729026 29 100.0 32 ............................. ACATACCGCAACCGCCGGGCCCGAGTCTCAGT 1729087 29 96.6 32 ............................T CCGCCACCGGGCCCGCCGCATCGTCACGTGAC 1729148 29 100.0 32 ............................. ATCGTGGACGCCCGAATCACGACCGCTGAGGA 1729209 29 100.0 32 ............................. CACGTGACCGGCGCGTAGAGCGCGGCCCCGGA 1729270 29 100.0 32 ............................. GTGACCGTGCCCCCCGGCTCCTGCGCCAGCGC 1729331 29 100.0 32 ............................. GAACGGAACGCCATGCGCTTCCGGCACACCAT 1729392 29 100.0 32 ............................. CCGTGTTGCCCCAGATTCCGCTCGACGATCCC 1729453 29 100.0 32 ............................. CCGGCCGACGTGGTGGTCCTGTTCACCCGGAC 1729514 29 100.0 32 ............................. CCCCCGGCAGCGCCTGACGCCACCGCCGAGGA 1729575 29 100.0 32 ............................. GTTCTCCGTGCGGTACATGCCGAGCCGGATCG 1729636 29 96.6 32 ............................A TCTCCGGGGACTTGGGAAGTCCCATGTCTTCC 1729697 29 100.0 32 ............................. CTCGGCGTGTGGCTGTCCAACCAGCGTGCCCG 1729758 29 100.0 32 ............................. TCCATCCCACTGACGTCGGGACCCTTTTGCGA 1729819 29 100.0 32 ............................. CTCAGTCGCGTGCAACATCTCGGCCAGAATGC 1729880 29 100.0 32 ............................. GAGCGGGCCCACGGCACCGCGAAGACGCTCCC 1729941 29 100.0 32 ............................. CCGCCCGTCCGATCACTTCCCCCACCGACTAC 1730002 29 100.0 32 ............................. AACTGGCTGTTCAGGTACAGGACCGTGTGGTT 1730063 29 100.0 32 ............................. GTGCAAAAGCCCGTCGCGACGTGGCGCTTATG 1730124 29 100.0 32 ............................. CTGATCGCGGGCGCCGAGCGAATCCGGGGCAT 1730185 29 100.0 32 ............................. AGGAGGGGTAGGAGGTCGGCCGGCAGCCACGG 1730246 29 100.0 32 ............................. TCCCGCCGGGCACGGGCGCCTTCACGCTGGCG 1730307 29 100.0 32 ............................. GTCATCGTGTGACGGGAACCCGTTTGTGTTGT 1730368 29 96.6 32 ......................C...... TGTGACGGACGTGAGGGCCGCACGGCTACGAG 1730429 29 93.1 0 .............G.............A. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.3 32 GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Left flank : CGACATCCAGCGCCTCATCGCCCCCAACGAAAGCCGCGAACAAGAAGACCCGGAAAAAGAATTGGTCGATCTCTGGGATCCGGTGTCCGGCGCCATCCCCGGCGGAGTCAACTACGCGGCCGGCGACCAATGACCACAACACACCGAGGCCCCCTATGCCGTCCATGATCTCCCTCACGATGACAGCAGTCCCCGACCACTTACGAGGCGCACTCACACGCTGGCTCCTGGAAGTGACACCAGAACTCTACGTAGGCACCGTCTCCGCAAAAGTAAGAGACGAACTCTGGAAAACGGTCAGCGCCTGCGTAGCCGACGGCATCGCAGTCCTCGCCTACCCAGACAACAATGAACAAGGCTTCACCCTGCGCACAGCAGGCCAACGCCGACGACACACACGCGACTTCGACGGCCTCACCCTCGTCGCGTTCAGACATCACCAAGACCCCGAAGAACGCCAAGAACTCGCAAAGCCAATCTGACAGCGCAGGTCAGGAAGG # Right flank : GGGTCGGCGGGGGGTAATCAGCTCAGAAATCGCTTACATATTCGACCGTCTCGCCATGCGGAGTGAGCGCCGAGGGGCAATTACCAAGGATCGCCGGGAAAGAATGTCATTTCTTTGCATTAACCGCGATCAGTGTCGCGGATGCACTGATCGACGCTGTAGCGTCAACGCCGGAGCCCCGGCAGCAGGCCAGCGCACCGGGGGCTCCTGCATTGCTGATCCGTTGAGAAGGAAATTGCATGAAAGACCAGCAGGATCTCAAGGCGCTCATGCGCGCCGCGAACCTCTCCGAGAGTAACACCCTCCGCCCGGAGAGCCGGGAAATTACCCAGGAAATTTCCTGGGGTGTCATGCACCTCGGGTCCCTCATGGCGGTGTGCGCCGTATCCACCCTGCTCGCCTGTCACGCATGGGAGACATCCGGTGGTGCGTTTGCCATCGTCGCGCTGACCAGCATGTCCATGAGCTCGTTCTGCGGCTACCTGCGTACGCGCTAAACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //