Array 1 8003-7374 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCSM01000218.1 Pseudomonas aeruginosa strain Pae_CF67.01c CF67.01c_contig_218, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8002 28 96.4 32 .............C.............. TCCCTTAGCGCCTGAGCCTCGGCTTCGAGCTT 7942 28 96.4 32 .............C.............. ACGATGATCTATCAGACCTATCGTGGCTACGC 7882 28 96.4 32 .............C.............. AGGTTGACCAGCATGGCCGGCATCGACAGCGT 7822 28 96.4 33 .............C.............. ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 7761 28 96.4 32 .............C.............. TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 7701 28 100.0 32 ............................ ACGTCGGAACGCAACTACCTGACCGCGTTGGT 7641 28 100.0 32 ............................ CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 7581 28 100.0 32 ............................ TCGGCGAGGCGATCGATCATGCGAATCAGCAA 7521 28 100.0 32 ............................ ATCGACCACGACAGTGCTTCCCTGGTCTATTC 7461 28 100.0 32 ............................ ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 7401 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTTATTCGCCCTACGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7128-8772 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCSM01000204.1 Pseudomonas aeruginosa strain Pae_CF67.01c CF67.01c_contig_204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7128 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 7188 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 7248 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 7308 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 7368 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 7428 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 7488 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 7548 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 7608 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 7668 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 7728 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 7788 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 7849 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 7909 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 7969 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 8029 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 8089 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 8149 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 8209 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 8269 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 8325 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 8385 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 8445 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 8505 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 8565 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 8625 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 8685 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 8745 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 19001-17652 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCSM01000204.1 Pseudomonas aeruginosa strain Pae_CF67.01c CF67.01c_contig_204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19000 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 18940 28 100.0 32 ............................ GTCTCGCGCACATGCGGAAACCAGCCGGCACG 18880 28 100.0 32 ............................ GATTCGGGGAACTCAAGCCGCTTGCTTTGCAT 18820 28 100.0 32 ............................ TGCTGGCGCTGATCAGTTGGAAAGGGCTTGCT 18760 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 18700 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 18640 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 18580 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 18520 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 18460 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 18400 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 18340 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 18280 28 100.0 32 ............................ GTCCAGGCACGTTTGCTCGCGCTTTGATCTCA 18220 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 18160 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 18100 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 18040 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 17980 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 17920 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 17860 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 17800 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 17740 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 17679 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //