Array 1 57748-56988 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXF01000006.1 Ruminococcus sp. AF16-40 AF16-40.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 57747 36 100.0 30 .................................... AATGACTTTTACAATACTTATAAAGATAGT 57681 36 100.0 30 .................................... ATTATAGTCAGCAAGAAATAAAAATGACTT 57615 36 100.0 29 .................................... TTATACAAAATAATGTATAATTTTCACTT 57550 36 100.0 30 .................................... AAACGAACGATAAATACATTTGTGAGCGCA 57484 36 100.0 30 .................................... TGTCTTAAAGACAGAAAGGAAAATTATTAT 57418 36 100.0 30 .................................... CAAATGTTGATGAGGAATACAGTGAATATT 57352 36 100.0 30 .................................... CGTTTCTGTTATTGTGTCGCCTCCTCCGAT 57286 36 100.0 29 .................................... TATCGTGACTTACAGATTTGCGGGAGAGG 57221 36 100.0 30 .................................... AGAGCCGTGGATTACTCTTTTTGATAGTGT 57155 36 100.0 30 .................................... TGTTGGGCAGTTTGTGATGTATGAACCGTC 57089 36 100.0 30 .................................... TGGTCAGTCGAATATCGTAACGATAGATAA 57023 34 86.1 0 ................G......T...--......T | C,A [56991,57002] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.8 30 GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Left flank : AGATACAATTCTAAAGGTTAAATTTGGTAGCATGGGCACAAAAATTTCAGCTCACCGTGATGCTTTTGAAAAACTGGATGTAAGAAAACAATGTTTTGTTCTTGCAGAAATTCTAAAAATTATTCACTCAAATGTTCTTACAGGAGATTTGTCATTTATTGGGGAGTCTAAAAAATCGGGCGTAGTTTCCACGAATTCCGTATTGTCGGAGGTTAAAGGTGTAAAGTCGATTTATCTTGTTCATCAGTCGGTAACAGGTTTGTTTGAGAAGAAGATTGATTTGTTACATATGTAAGTTATCAGAAAAGAGGAAATTTAGATGAGTTGGAGAACGGTAGTAATTACGAAAACATCCAAGCCGGATTACAGCATGGGACACCTTGTTGTGATTGATAATGATTTGTGCGAATTTTATTGACAATCATTATACAAATGTTATAAAATAACCTTATAGATTTGCCGTGCGCAGTATAGTGGGTGCATTTTATTTTCAATTTGAG # Right flank : TTTACTCGTGGACTGTGAAAAAACAGCATTGAAAAAAACAATATGGCACATAACCGTTATCACTTTCGGTTATGTGCCTTTTGTAATATAATAAGTTTGTTAAGAATACCACGATTGATTACAGTCCAAAACAAGGAAGATTTCAGTGCGTTAATTTCCAAAGTAAGTTCCACCATGAAAGTTACTTTGGAAATTAACTATTTACTTTTTTGTTTAAGTTTGCGGTAAATATGAATTGTATAATCCGTTTTATTGTGTTATTATGTAGTAAAATGGTGTGCAACATTGGTGTTTTGAAAAAATTATGTTGCTGAAATTAAACTTGAAATAACTGACGGGTGGCATATGGTTCGCAAAGTTGACAAAACAAAGCTTCTGACTGTTGTCGGGATAATTATATTCCTGTTTGGAGGTGCGGTGAGAATTTTTTCTCATCTTACTTCCTCGGCGGACAATTATATTGAAAATATTGATGTTATTATCTTTTCGGGGCTTATTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATAGTGTAAATCTATAAGGTAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 336894-336663 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXF01000001.1 Ruminococcus sp. AF16-40 AF16-40.Scaf1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 336893 30 100.0 37 .............................. TTACAATGCTTACGGCAACACAACATCAATCTCGGCT 336826 30 100.0 36 .............................. CACGAGCTCGGACATATACTACTCGGTCATGTCGCT 336760 30 100.0 38 .............................. CCACAACACACAGGCTGGAGCAAGTAGCCTGCTTGCCT 336692 30 96.7 0 .............C................ | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 99.2 37 GGCAACCCACTTGTCTACGAGGATTGCAAC # Left flank : GCTTTTTAGGTGTAGCGGTCTTTACTGCAGTACAAACACCTCTCTTCTGTGGGGAGCTCTGATCAATAGCAACACGCTTTTTTGAGTTCCAACCCTTTAAGAGAGCAGGTGCCTTTGCCTTCTTCTCGGAAACCTGTCTGCCCTTGCGTACCAACTGGTTAAATGTAGGCATTATTTGTCCTCCTTTCAAAAAATATAAGAATTGATAAAACTGCTTTGCTTTTGCAAAGCCCTGTGAAACATCAATAATATCCCCAAAAACGGGCGCAATTACAGAATGTCCCACGATTAAACATTATAAACTATCCGCTCACTTTTTGTCAAGCATTTTTTTGTAAAATTTAAGCGAGGCAGCTATAACAAATATTAACTGCTATTTGGTTGACAACATAAAAATGGGAAATGCACAATCTGTAGCATTTCCCGATTAAACTTATTTACTTTTTTGTCTACGAGGATTGCAACACATACCGCATTTTGTTTCTAAGCCGTGCAACTTC # Right flank : TGCAAAATATTCGTAATTTGTGAGTGTTATGGTACTAAAGACCTTCTCAGTTACGGCGGCAAGTGCAAAAAGTACTTACACGGCGCAAAAGCACTGGATCTGATTCCCATAACATTTTACTATCGTACAAATTCACCTTGAATTTGCAACATTGATAGTTTAGGACATGCCCTGACCTTCTTTATTTTTGGTGCGAACTATCACACCTTTTTATGTTTACTTGTCATTCGCACTTTTCGTACTTGTTGATATTATGCGATTCCATAGCTCGAAATATTTTTCCTTTCTCTCAACTTCACCTCATTTCTTATATTTTCTATTTCTTTATCGTGTAATTTTTTAAAGCTGTCATATGTTTTTGAACATTTATCTAAATCAATTTCATCGTGTGTTTTATTACTGTTTTTTATTAAAAATGCCGAATACAAATCTCGCTGAACCTTGTCACCGTTTCCGAGTATCCGCCATCTGTCATTCAAACCGTGTTTTGTATATTCACC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAACCCACTTGTCTACGAGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 434349-434913 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTXF01000001.1 Ruminococcus sp. AF16-40 AF16-40.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 434349 37 97.3 29 ....................................C AAAAATGAACTCGCAGACGGGCGTCGGTC 434415 37 100.0 29 ..................................... TTATTTTGCGGGCTATGTGCCTGATGCTT 434481 37 97.3 29 ...........T......................... AAAGCGGCATTCTTCAATCGTTAACTGCT 434547 37 97.3 29 ...........T......................... TTAAGCGAAAATAAAACCGCCCTGACCTG 434613 37 100.0 29 ..................................... GATGCTGTCTTTTGTGTATATAGTTTTTA 434679 37 97.3 28 ............C........................ AGGTCAGCATAGTTTCCGTCTTGGTAGA 434744 37 100.0 29 ..................................... GAGATGCGGCATAATTGTTAATTGTGGAT 434810 37 100.0 29 ..................................... AATTATCAGCAATGTAATAAGTAATCGTG 434876 37 83.8 0 .......................A..T..AAG.A... | A [434899] ========== ====== ====== ====== ===================================== ============================= ================== 9 37 97.0 29 GTTTTGGCTCTCTGATGAATATTGATAAACTTATACA # Left flank : AATGTGATGAAATTGATGCGTTATCCAAAAGCGTGAAGCCCGGGGATACAACAAACCGAGAGGCGGTTGCGGCACGAAAATATTTTGTTGCATTTGAAAATTGTGATACACTTTTTGAAACACTTACATATAGCAATCGTAAGAATTTAATTGATTTGCCAAACCAAATTATTTTGCAATCAGATAAAAGAAAGCAATATTCGCAATTTAGAAAAAATCTGATTAAATCAGGTTTTATCATGGTGCAGTTTTCTGTATATGCGAGAACTATCAGAAATAATGATGATGCAAAAAAGTATTCAAAAATAGTTAAAAGTATTTTGCCCCCATCGGGTTCGGTACGATTGCTGATAATAACCGATCGTCAGTATGATTCTATGGAAATTTTGATAGGAGAAAAGTATGCAGAGGAAAACTATCTTGACAAAAGAGATATCATTGAATTATAATATACTTGTGTTTGAATTGTCAAAACCGCCTACATTCTACAAGATGTAGTG # Right flank : AGCTTGTGGAATTCTGTTCTGCAAGTTGCTTTTTTATAACCAAAGGGGAGATAGAGGGACAGCGTTCTTTGGTATAATATAGTGGACAGTTTGGAACATCGGACGAAAATAAAATTCTTTTTGCAAATTGCAATAGCAAGTTAAAACAGTTTTTTATGGATGAAATTGCAACTACAGGCACAAAGCATATGCACATTTTCATTTACTCAAAATCGCCGATTCGCTTTTCAACATTGAAGAACAGATTCACTGTTGCACATATTGATAAAGCTAACGGCAGTGTAATGGAAAATCGTGACTATCTCCGCAAGGAGGGCAAGTGGCAGGGTTCTGATAAGGAACAGACGAATCTTATTGATACTTTTGAAGAGGTTGGTGATGTTCCAAAGCCTGTTGATGAAAATTCTCCCGATATGTCTGCTCTGATTGAAGAAATCGAAAACGGACTCGATACCTGCGAAATTATCAAGCTCCATCCAAAATATGCCTTTAGGATAAAA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCTCTCTGATGAATATTGATAAACTTATACA # Alternate repeat : GTTTTGGCTCTTTGATGAATATTGATAAACTTATACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //