Array 1 5370-7273 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXB01000191.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2861 NODE_191_length_7813_cov_3.82903, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 5370 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 5431 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 5492 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 5553 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 5614 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 5675 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 5736 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 5798 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 5859 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 5920 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 5981 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 6042 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 6103 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 6164 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 6225 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 6286 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 6347 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 6408 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 6469 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 6530 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 6592 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 6695 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 6756 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 6817 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 6878 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 6939 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 7000 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 7061 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 7122 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 7183 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 7244 29 96.6 0 A............................ | A [7270] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 780-2272 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXB01000125.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain BCW_2861 NODE_125_length_12952_cov_4.4825, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 780 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 841 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 902 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 963 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1024 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1085 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1146 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1207 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1268 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1329 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1390 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1451 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1512 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1573 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1634 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1695 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1757 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1818 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1879 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1940 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 2001 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 2062 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 2123 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 2184 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 2245 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //