Array 1 25-662 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CTPJ01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain H32 isolate H32, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
        25	    29	  96.6	    32	.............T...............	ATGCCGGAACGCTGATGGCGTTTGACATGAGC	
        86	    29	 100.0	    32	.............................	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT	
       147	    29	 100.0	    32	.............................	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT	
       208	    29	 100.0	    32	.............................	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA	
       269	    29	  96.6	    32	.....T.......................	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC	
       330	    29	 100.0	    32	.............................	CCAGCTTACGCTATTTACGACGTTATTGAGCA	
       391	    29	  93.1	    32	.................A........T..	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT	
       452	    29	 100.0	    32	.............................	CAGGTTATGCGCAAAAATTAATTCATATTATA	
       513	    29	  96.6	    32	.................A...........	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA	
       574	    29	 100.0	    32	.............................	CGTTCATCGGCAGCGTCACGCAATATGAAGAT	
       635	    28	  82.8	     0	...............A.AA....-.G...	|                               	
==========	======	======	======	=============================	================================	==================
        11	    29	  96.9	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   GGAATATTTCCGAGGCTGGCGATTG
# Right flank :  GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [20.0-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.65,0.27   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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