Array 1 360321-362868 **** Predicted by CRISPRDetect 2.4 *** >NZ_WJRX01000003.1 Listeria monocytogenes strain 23949 NODE_3_length_368276_cov_100.241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 360321 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 360387 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 360453 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 360519 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 360585 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 360651 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 360717 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 360783 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 360850 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 360916 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 360982 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 361048 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 361114 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 361180 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 361246 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 361312 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 361378 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 361444 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 361510 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 361576 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 361642 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 361708 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 361774 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 361840 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 361906 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 361972 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 362038 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 362104 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 362170 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 362236 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 362302 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 362368 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 362434 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 362500 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 362566 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 362632 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 362698 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 362764 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 362830 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [362855,362861,362864] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //