Array 1 253130-253957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVV010000004.1 Thermoactinomyces sp. CICC 23799 NODE_4_length_304557_cov_1.748740, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 253130 30 100.0 37 .............................. TCGATTCGCCCTCTGTTTTGTTCAATCGCCTTATCGT 253197 30 100.0 38 .............................. AATGCTTGACATCATATCCCGGAAATGCTTTTTCTAAC 253265 30 100.0 36 .............................. TAAGCTCGGACCCAAGGGACTACAATTGGCAGCAAA 253331 30 100.0 37 .............................. CCTCGATATATAGCAGGGGATCGGCTGGGGTGGATCG 253398 30 100.0 37 .............................. TCCAAAATGTCACTCGGTCACCAGCACTGTCTTCGGG 253465 30 100.0 35 .............................. AAGAAGAAAACCAGAAATCGGAAGCAGAACCGGAA 253530 30 100.0 35 .............................. GTGGACATCCTGAAGTGTTTAGTTTTCCGAACTAT 253595 30 100.0 35 .............................. ATGAAGATGATCGAAATAAAAAAGTCGACAACCAC 253660 30 100.0 39 .............................. AACTAAGTATAAACGGAATATAAACTAAGGAGGGAGCGG 253729 30 100.0 35 .............................. TCATCTTATCTTGCGCCAATAGTGACTCATCCAAA 253794 30 100.0 36 .............................. TACTTGAGCAAGTAGATTGCCTCATCCCAGGTGAAA 253860 30 100.0 38 .............................. TTTTCGATCAAGCCAATCACGTATTGAATAGCCTGTTC 253928 30 93.3 0 ......G..........G............ | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 99.5 37 GTTTATAAACTACCTATAAGGTATTGAAAC # Left flank : CAGCAGGATGATAAAGGTTCTATGAAATTGACGCAAAAGTTTCGCTTGGGAACATGCGATGTTTGTTTCGCCTCCCTAAGCTCATTCTCCTCCTTATTATGTGATTTTTAAGAAAAAAAGACAGGGATGGCCGAAGCCAATACTGTCCCATAACATCTCGACTCTTTTCTGCATCATCTTTTGGAATTATAGGTGAATTCAATTTACTTTTTCAATATATTAGCCTAAATCAGCCATAAAAAATTTATGACATTTAAAATTCGATTCAGGAAATTCAAAAGGAACAATAGTAATTCTTTACTGTCGAAACTTAGCTTATTAAAACCTCAAGAAAGTAGTAGTTTCGGTAATTTAAATAAGTCGTCGACCTCCAGTTGTGCAAAAATCCCTGGGGATCGACGACAATTACTTTTCAGGGTTATCAAGTATTTTCAGATTTGCTTTAATTTTGGAGTCAAAAGAGGTAAAATAAAAACGCAGTGTTTATGAGGAGTTTAGGG # Right flank : CCGCCAGTGACGAATGAAAGATTGGCAAAAGAAGAGATTAAAATGTTTTAAAATATTAATGGGATTGCTTGGTTTCAGTTGATTGATCCAATATAAGGAGGATCAACCTTGAATAAATTTTGGAGAAATGTATTGGATCATTGTAGTTGTTTTTATTGTTGTTGTAATATTTGGAGGAGCACTCTTGTTTAATTTTTTGTGGAGCCTATTTGGATGAGTGAGATGTAATACCGATCTCCATTTTATTTTTTAATCAAAAAGGGTAAAGAGAAAGACATAGAGTTTTCGTAGAGTTTAGGGGTTTATGGATTACCTATGAGGCATTGAAGTACCTTCACATAAATGAAAGCAGCCCATCATGTTTTTGGGCTGCTTTTTAATATGTTCATGTATCGATTCAATGTGTCTTTATTCCCACCAGTTGGCTTCACTTTATCCTGTTCCCACAACCGGAGTGTTCTTACATTGACGCCAACTCGTTTTGCAAATTCCTCCCGGTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAAACTACCTATAAGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 640-161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVV010000027.1 Thermoactinomyces sp. CICC 23799 NODE_27_length_1494_cov_1.822939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 639 36 100.0 41 .................................... TTTCAGTTCTTCCGTGCGCCGTTCGTTTTTGCAAACCCAAA 562 36 100.0 38 .................................... CTCTTCTGTTATGAACTTGTCGCAGACTTTCAAAAACT 488 36 100.0 39 .................................... GAACTCTCAAGAAACTTCCAATGCTCGCTATCTCGTTTA 413 36 100.0 38 .................................... TTTTCGGTTCGGTTTCGTTCAATTCAGCGACAATTTCT 339 36 100.0 35 .................................... TTGGTTCCGTTTGTTTGAGTTCAGCTTGAATCTGT 268 36 91.7 36 ....G....A..........C............... TTCATAGCACTAGTGGCAAAAGAATTAACGATATCC 196 36 94.4 0 ....G....A.......................... | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 98.0 38 GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Left flank : AATTCAAAGATCGGCGGCACTTTGATGCTGATTTCAGGGATCGGCGGAATAATTAGCATCTCGATGTTCTATGTATTAGCAACCGTGTTCCTTGTAATGCAGGATTAATGGGAATCTTCCGCAAGGATAAACCAAAAGAAATGTCAGCATGAACCATTTAAAGGTGGGATTTTCCTCTTCTGGAGGATTACAAAAACAGCTCTCTCCATTTCCCGGAGAGGGCTTTAATATTAGAACTGAAGGTTTACAGATTTTTTATTTTTTTGTAGACTGAAATTAGTTGATATTTTTGATGTTCATACAAGGGTTTTTCGAGCACCTTGATATGCCAAAAACCCCCGGGGTTGCTCGTAAAAGCTGAAACCCGCATGAAATAAAGGAAAAAGCCACCTTCGTTTTGAGCTGATACATAAAAAATAACTTAAATGCTCTTTAAAAAACGAAGGTGCTCGAAAAACCATATTGAACCTCAATCGTATCAAGGGTTTCAGACACATGCA # Right flank : CAAAAAAGCCCTCTCCGGATATGGAGAGGGCTTTTAATTATTGCCCAGGCATATGGAGATAATGGAACGAATTGGCTAGATTTAATAAGTAACAAAAAATCTTACGTTACTTTTCAAAAGAGGAAAGTCCAGATAACCACCGAAACCTCTTGAAATTCAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 198526-198785 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVV010000005.1 Thermoactinomyces sp. CICC 23799 NODE_5_length_234801_cov_1.809235, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 198526 36 88.9 38 ....G....A.........A..A............. TTTTCTGGCTTTCATCATCACTCGATGCGAGCTTTTTG 198600 36 97.2 39 ....G............................... AAAACGTCTCCGGTTTCTTTTAGCTCTCAAATCGTGGTA 198675 36 100.0 39 .................................... TCACTCGCTTGTCCGGAACTTTGTCCGTTCTGTCCATTC 198750 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 96.5 39 GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Left flank : TGCTCTTTAAAAAACGAAAGTGCTCGAAAAACGATATTGAACCTCAAGCGTGTCAAGGGTTTCAGACGCATGCAGTCAAAATGGTTACACCTCTTCTAGAGGATTGAAACAGTGGTGCGAGCCACATGTTTCCTACCTTTTGAGGCCATGTCAAAATGGTTACACCTCTTCTGGAGGATTACAAAAACAGCTCTCTCCATTTCCCGGAGAGGGCTTTAATATTAGAACTGAAGGTTTACAGATTTTTTATTTTTTTGTAGACTGAAATTAGTTGATATTTCTGATATTCAAGCTTGTAACAGAAGTTCTTTTTCGAGCACCTTGATATGTCAAAAATCCCCGGGGTCGCTCGCAATAGCTGAAACCCGCATGAAATAAAGGAAAAAGCCACTTCGTTTTGAGCTGATACATAAAAAATAACTTAAATGCTCTTTAAAAAACGAAGGTGCTCGAAAAACGGTGCTGAACCTCAAGAGTGCCAAGGGTTTCAGACACATGCC # Right flank : CAAAAAAGCCCTCTCCGGATATGGAGAGGGCTTTTAATTATTGTCCTGGCAATGTGAAGATAGTGGAACGGATTGGCTAGATTTAATAAGTAACAAAAAATCTTACGTTACTTTTCAAAAGAGGAAAGTCCAGATAACCACCGAAACCTCTTGAAATTCAAATGTCGAGTGGTTATGAAAAATACCCGGGAACTTTAATATTGGATCAGCATGTATTTTTGCATGCATAAAAAAGACCGTCCATATCGGACGGTCTTTTTTATTCCAAACTGGATTCAATGAACCGGCTTTGTCTCTCGTCTAATTTTTTCATACGATAACCTCCTTTTTCTTTAGTCAATCTCCTGGCACGCCACTTACACAGTGAACGAAAAATACCACTGTGTCACGTTCGTGCAGGTGGCGGCCACCTCTTCGCTGGCGAAACTTTGACTTATATATTTTTTGACTTGAAAATTCTCACAGCAAAAAATGTGAATGAATGAAGAATTTTTATTTTA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:0, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATGGTTACACCTCTTCTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 2 221191-220935 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECVV010000005.1 Thermoactinomyces sp. CICC 23799 NODE_5_length_234801_cov_1.809235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 221190 36 100.0 36 .................................... CTCTTCCTCTTGTGTAGATTCGCCGTGCGCTTCTTC 221118 36 100.0 37 .................................... CATTGCCGGCTTTTTGGTGTTCCTCGGCCTTCTTCAG 221045 36 100.0 39 .................................... ACCCAAACCTCGTTCAGATTCTTACATCCCTGATACACT 220970 36 88.9 0 ....A....G...........T.G............ | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 97.2 38 GTCAGAATGATTACACCTCTTCTAGAGGATTGAAAC # Left flank : TCTCCGGTTATGGAGAGGGATTTTAATTATTGTCCTGGCATGTGAAGATAGTGGAACGGATCGGCCAAGAATTTATCAAATTGACGGCTGACTGAATGATATCCAATCGCATATGCACCGAGCCTCGGAGCCCAGGCAGCATAACACCGGCAAGCATTGATGACACGTTGCTTGATAGTGTTATCCGTCGGGGTATCTTTCCAACCGCCACCAGGAATCGCTGCGCCACGGGATTCACTGAAGGTTTACAAGAATTTTATTTTTTTGTAGACTGAAATTAGTTGATATTTTTGATGTTCATACAAGGATTTTTCGAGCACCTTGATATGCCAAAAACCCCCGGGGTTGCTCGCAATAGCTGAAACCCGTATGAAATAAAGGAAAAAGCCACTTCGTTTTGAGCTGATACATAAAAAATAACTTAAATGCTCTTTAAAAAACGAAGGTGCTCGAAAAACGATATTGAACCTCAAGCGTGTCAAGGGTTTGAGACATATGCC # Right flank : AAAAAAGCCCTCTCCGGATATGGAGAGGGCTTTTAATTATTGCCCAGGCATATGGAGATAATGGAACGGATCGGCCAATAATTTATCAAATTGACGGCTGACTGAATGATATCCGATCGCATATGCACCGAGCCTCGGAGCCCAGGCAGCATAACACCGGCAAGCATTGATGACACGTTGCTTGATAGTGTTATCCGTGGGAGTATCTTTCCAACCGCCGCCAGGAATCGCTGCGCCACGGGATTCATAGTCATCCCTTGTGGCCATACTGATGATAAAGCGGACATAATATTGAATTGCCCCTTCATCATAGAGATCCTGCAAAGCTTGTCCACATGCTGCATGGTCCTGGATGGATATCGTGATAACTCAAGGTATAGTGGTCAGCATCCGGATAAAGGTCAATATACTTTTGAATTATGTTTTTCGCTTCATTCACCGTTACACTTTCCCCGCCGTCGCTGTTCGGATCATCAAGATATTCAATATGCTGATTTTCA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAATGATTACACCTCTTCTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //