Array 1 1756550-1749557 **** Predicted by CRISPRDetect 2.4 *** >NC_009464.1 Methanocella arvoryzae MRE50, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1756549 29 100.0 32 ............................. TGATCAGTAACCCGGTCACCATTAAACAGATT 1756488 29 100.0 32 ............................. TAATCAATCCGATAGGATCATAACCACTATCA 1756427 29 100.0 32 ............................. CAGAGCAAATCATAACCGAATACTGCCGGTGC 1756366 29 100.0 32 ............................. TTACAGAGCATTCTTCAGAGTGAGCGCGAGGG 1756305 29 100.0 32 ............................. AATGGGCGGCGGATGGTACGATAATCAAAGCC 1756244 29 100.0 32 ............................. ACGGAGTTAGACCTGACGGCACACCGTATAAG 1756183 29 100.0 33 ............................. GTTGAACGTAGTGCCCCCGTCCCCGGCGCCGTG 1756121 29 100.0 32 ............................. TAGACCCCACCCGGGGTCTTCACGTACTGTGC 1756060 29 100.0 32 ............................. GCAGCTCAGGGAGAAGAGGCTCACGCCACTAA 1755999 29 100.0 32 ............................. ACCTCAAGAAGCTCATGGCGGGAGCTAAGGCC 1755938 29 100.0 32 ............................. CCGGTGGGATGAATCTACCCCACGGCCCCGAT 1755877 29 100.0 32 ............................. TTAAGAGAAATAATTTTGAAATAATATTAGAC 1755816 29 100.0 32 ............................. AAGCCTGACCGCATCCGATGAGATACGCAATG 1755755 29 100.0 32 ............................. AGAACAGGCCGATTATATCATAGAGCAAACTG 1755694 29 100.0 32 ............................. TTTTACCCCAAAGTGTTTTGTCTGGCCGGATC 1755633 29 100.0 32 ............................. ATGTTGAGTTTTGGTTACCTGTTCCCCACCCA 1755572 29 100.0 32 ............................. TCGTTGAAGATATTGAAAGAGGCAAAATCATA 1755511 29 100.0 33 ............................. AGCTGGTACATACAGGAGTTAATACGAGACGGC 1755449 29 100.0 32 ............................. GCGTTCAGGGCATCTACATTAATAAGGCCCTC 1755388 29 100.0 32 ............................. CCGGGCACTTACCGTGTAGCTCTTTTAGATCC 1755327 29 100.0 32 ............................. GTCGTCTGTAGTGGTGATATCGTGGCGGAGAT 1755266 29 100.0 32 ............................. ATACTGTGCAATTACCTGATTTCCATTAGTAT 1755205 29 100.0 32 ............................. TTCCTGAAAAGCCATGAGATTAGCTTCATAAG 1755144 29 100.0 32 ............................. TTTACTTATTGGTGTTTTACTTGGTGCAATCA 1755083 29 100.0 32 ............................. CTTATAGTTGCTACCACTCTTGGGCCTGAGCA 1755022 29 100.0 32 ............................. GTATCCCCGTGGATACGGTGCAGAAGCGTGTC 1754961 29 100.0 32 ............................. GGGGGCCGAGCGCTGCAACTTCGGGCCTGCGC 1754900 29 100.0 32 ............................. GCCATTAAGACTTTGCAAAATCAGGCTATTGG 1754839 29 100.0 32 ............................. TATATCCGTCAGGAGCAGTAATAAGACTGCGA 1754778 29 100.0 32 ............................. TTATTTGATTGGAGTACGACCTACGTAGAATC 1754717 29 96.6 34 ............................A GACGGTATGGCCGAGATGGAACGAGTGTATGAGC 1754654 29 100.0 32 ............................. GTGTACCTTAACGCAAGTATAATTTGTAGTTA 1754593 29 100.0 32 ............................. AATGGTGATTGATATGAAGATGTACAATATTG 1754532 29 100.0 32 ............................. CGGCAATCGGCCCCGGCATCGTAGGCATCACC 1754471 29 100.0 32 ............................. AATCGTTCGACAACATCCTGAAATATCTGAAC 1754410 29 100.0 32 ............................. AGGACGTCACCGAGACGATAGTGGATAAGCGG 1754349 29 100.0 32 ............................. CAAGCGATAGGAGAAATAGTATATGCTTGGAC 1754288 29 100.0 32 ............................. TACAATAGCGGGTTAGACGATGTTACTGTCAC 1754227 29 100.0 32 ............................. TATTATAATTCAATAGCGTATCTTGGGGTAGC 1754166 29 96.6 32 ............................T ACACAAGTCACAAATCTGGCCATACCTGACGC 1754105 29 100.0 32 ............................. CATGTCTCGCAGCGGAGCACTGCGGAGCCTTG 1754044 29 100.0 32 ............................. TTAGCGTGTTCGTGAAATTGCCTTTCCCATAC 1753983 29 100.0 32 ............................. AGTTGGTACGAGTTAAGGGACACAGTAATCGA 1753922 29 100.0 32 ............................. ATACAAGATAAAAATTAATTTTTTGCGTATTC 1753861 29 100.0 32 ............................. TATGCCGCCGAAAACATGCTGGTAAGGAAACA 1753800 29 100.0 32 ............................. GAAGTTACTAAGGAGCAGATTCACGCAGCGGC 1753739 29 100.0 32 ............................. TTAAGCCGTCTATCCGTCTCGCCGGTCGCAGA 1753678 29 100.0 32 ............................. TAGCTAAAAAACGTGTTTGCCTCCTATTAAAC 1753617 29 100.0 32 ............................. TAACACCAAACCAGTTTACCAAAGACGGCTTT 1753556 29 100.0 32 ............................. AATACCCTGTGCTTAAGATGCAGTCCGGCATA 1753495 29 100.0 33 ............................. GACAGCACCCACTAATAGATTTAAAAATTAAAT 1753433 29 100.0 32 ............................. ATGAGAGCTAAGACTAAGGCTGCACGTAAGAA 1753372 29 100.0 32 ............................. ACCTTGATGGCATTGAGGTATCAAGCCAGCGC 1753311 29 100.0 32 ............................. ATCCGAGACATTAACGGAAATAGTGTAGGGAC 1753250 29 100.0 32 ............................. CGGCATCGGTTGGTGTTAGTATCATACATACA 1753189 29 100.0 32 ............................. AGAATGGAGAGGACGGCCAGAGCCGAAGCCCA 1753128 29 100.0 32 ............................. GTCACTAAGATCAAGCGGGGAGAGATCGCTGA 1753067 29 100.0 32 ............................. ATCAGAGTGTTAAAGCTATGGAAGAAGCCGGA 1753006 29 100.0 32 ............................. ACTACACAGGATTATTTTAAATGCTCCAAAAC 1752945 29 100.0 33 ............................. ATAGTAGCGCAGGAACCGGGAGACGACCATCAC 1752883 29 100.0 32 ............................. AACGATATCCGCAGGATCACTACTGATAAAAA 1752822 29 100.0 34 ............................. CCGTGAGCGAGAACGTTAGTGCCGTCCTTTGCCC 1752759 29 100.0 32 ............................. CTTGAAAAGCTTCAGGAACAAATGAAGATAGT 1752698 29 100.0 32 ............................. AAAGTTGCACAGTGGAAGATTCAACCTAGAGA 1752637 29 100.0 32 ............................. CAAGCCAGTTATTCGATCAGGCTCATAAGATG 1752576 29 100.0 31 ............................. CGTTAAGCGTGAAGCACACCTGTACAAACAA 1752516 29 100.0 33 ............................. TTGATGAACCGTGTATCCATTGCAATTCTGTTA 1752454 29 100.0 32 ............................. GAACACAAAAGAACTGGCTTAAGCCAGTGGTG 1752393 29 100.0 32 ............................. GTGGCCTGTCCGTTGCTATTGGTGACCTTTCC 1752332 29 100.0 32 ............................. TTCCTGGTCATGTCGCCATGCTGACTCATAAT 1752271 29 100.0 32 ............................. TCATCAAAGAATGACTGCTGCTCTGCCCATTC 1752210 29 100.0 32 ............................. CTGGCCCCGGCAGAAACTACGATGCTTCAAAT 1752149 29 100.0 32 ............................. TTCTTTGCGATAGACCTTCCTACCGACTACGC 1752088 29 100.0 33 ............................. GGTGTATTTGTGGGTATTGAGGTTAAGCGTCCC 1752026 29 100.0 32 ............................. AGCAAGAGCTGACTAATAGGCTGCTGGCAGCG 1751965 29 100.0 32 ............................. GCGCTCTTGCGTGGGATACTGCCCCGTCAGCG 1751904 29 100.0 32 ............................. AAAGCTATCTTAAGAGTGTTGAAGCGGAGGAA 1751843 29 100.0 32 ............................. AATGGCGGCAAGTGTATAGATAAATGCCCAAA 1751782 29 100.0 33 ............................. GCCGCTATTATTGGGTATTCTTTAACTATTCTC 1751720 29 100.0 32 ............................. GGTATCAAAAGTACCTGGAAATCGAAGCCCGT 1751659 29 100.0 32 ............................. AAGCAGCAGATCATGACAACAAGGAGGTACAG 1751598 29 100.0 32 ............................. GGATGCATACTATCAATTGAATCTATCCTGCC 1751537 29 100.0 32 ............................. TTTAACACAAAAATTTTCCAGTTATATAATGA 1751476 29 100.0 32 ............................. ACCGGCAAGCATCATCCAGCCTGGCACGACAA 1751415 29 100.0 32 ............................. CGATGATTACACCTGCAGCTGTGCAGGCGCAG 1751354 29 100.0 32 ............................. CCGGACCACGTATCGTTCACGGTCAACATGCC 1751293 29 100.0 31 ............................. TTTGTCTTCATCGATAACTGGTGGTTGTGCC 1751233 29 100.0 32 ............................. ACATGATGGTAAGTTAATATGTCCATTGTGTC 1751172 29 100.0 32 ............................. ATGGAGCAGGCGTGGGTGATAATGAAAACCCC 1751111 29 100.0 32 ............................. AAAGAAGACTGACTTACAGCCTTCTAATCTGA 1751050 29 100.0 32 ............................. GCATATGCTAAAACTTTTACTTGATACCCTAT 1750989 29 100.0 32 ............................. TACCATTTCCCGATGTACGGGGGAGCCTATGA 1750928 29 100.0 31 ............................. TACGCCTGGACAGGTAGCGCTTCCGTGAAAA 1750868 29 100.0 32 ............................. GCGACGCCCCACACCCACGACGCCCCGACCGC 1750807 29 100.0 32 ............................. TTGTACCGGAGAATTTTTAGGGCAGACGTCGC 1750746 29 100.0 32 ............................. GTTAATGCGGTAGGACTTAGCGGACCAGACGA 1750685 29 100.0 32 ............................. TTGTCCCTGTCCTTACGAAGGTAGGCGACGCG 1750624 29 100.0 32 ............................. TACGAGTGTAAGACTCGGATCGGGGCTGTAAT 1750563 29 100.0 32 ............................. GTTCGCAATCTGTGCGTTTATGATTTCGGTTG 1750502 29 100.0 32 ............................. AGGGCGGCAGCTCCGAACATTCCCGCAAGTGC 1750441 29 100.0 32 ............................. ATCACCCCAATCTCGGACGGCCAGCAATTCAA 1750380 29 100.0 32 ............................. AATGAGCAACTACGATCTTTCAAAAGAGATAG 1750319 29 100.0 32 ............................. GCCAAAGACGAGAAGGCAGAGTTCGACGCCTG 1750258 29 100.0 32 ............................. ATGGCGCACGGTTCAACATGAAGACCCAGATA 1750197 29 100.0 33 ............................. ATGTCGACTCTTCGTTCTCGTATGACAGCCTCA 1750135 29 100.0 32 ............................. TAACGCAACCAAATCCCGGTACGTCGTCTAAT 1750074 29 100.0 34 ............................. CGTAAGCTGCTCAATCGTATCGGGGCCTACTTCC 1750011 29 100.0 32 ............................. CGAAGATCAGGGCCGTCATGGAGAACTGGCGG 1749950 29 100.0 32 ............................. GGACAGTCAGCTATGAGGTTCATACGTTCGCC 1749889 29 100.0 32 ............................. ATATCCAGGGGCGTTGCCACCCTCAAGAGGGC 1749828 29 100.0 32 ............................. CCGGCCGCTCCGGATCCCCTCGCGATAACTAT 1749767 29 100.0 32 ............................. ATCGAGCCGAACATCGCAGGCACCGATGTGGC 1749706 29 100.0 32 ............................. TCGTTGGCGTGGATATATAGGGATTGTTGCGA 1749645 29 100.0 31 ............................. TCAGTAGGCGCTCTATGAAAAGATAATATCA 1749585 29 75.9 0 T.G........G.AT............AA | ========== ====== ====== ====== ============================= ================================== ================== 115 29 99.7 32 AAAGTCCCCACAGGCGTGGGGGTGAACCG # Left flank : ACCTGGACTTACTGTCAAAGATCGTGCCCGATATCGAGAAAGCCCTCGATGTGCCGATACCCTCCGACCTGATCTTCGACGATTTCGACTCCGACCTCACAGTGCCCGGAAAAGTCTGGGACCCCGACAAAGGGCAGGTGCCCGGAGGCACGAACTACTCTAACGAAGCCGTGTGATCTTATATGGCATCTTTTTCAGTATTTATCGTAGAATCAGTCTCCCCATCTCTCAGAGGAGAACTGACCCGCTGGATGATCGAACCCAAGGCCGGCGTATTCATCGGCAAACTATCCGGAATGGTGAGAAACAAGTTATGGGGCAAAATCATTAAAAACATCAAAAAAGGAGGTTGCACAATGGCCTATTCGTACAACAACGAACAAGGCTACAAGATAGAAAGCTACGGAGATACAACCAGAACAATAGTAGACTTCGAAGGGCTATCTTTAGTGATGACTAAAGAAAAGCCTTAATAATTAAAACGAAGCTCTTTTTCAAGT # Right flank : CCCTGCCCATGGCAATCAATATACAATTTATTATGCCTGTCAGCCACGGAAGTGTACTATGTCTTGCTGGATGCCAATTTATATTGATACAAAAAATTTATAAACCATGTCCTAATCCTATGTTATTGTTTTATCAGGCAGCGCCCCGATAATACTCTGGTCGGCGCACGCATGATAGCAAAGTTTAGGATGGCCACAGACTAAATAGAATTGTGTATTGCAGGCGTATTCCGCCGCGCTAAGAATTTAATCTGGGCTGTCCCGGAGAGACTTGTCAATGTCCAATTTATTGATCGAAGCGGTCATAGTCGTATTTCTGATCATTCTTAACGGCCTTTTTGCGATGGCTGAGATCGCCATTGTGTCCAGCCGTAAGGCCCGGCTGCAGCAGCTTGCCAACGAGGGCGATAAGAACGCTAAAGTAGCTCTTGACCTGGCCATGGCTCCCGGCGACTTCCTGTCGACTATCCAGGTCGGCATCACGCTGATCGGCGTCCTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAGTCCCCACAGGCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //